data_4QJZ # _model_server_result.job_id cJBfgXu1_ftrJSnRZnX-qQ _model_server_result.datetime_utc '2024-11-08 18:20:52' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 4qjz # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"C","auth_seq_id":302}' # _entry.id 4QJZ # _exptl.entry_id 4QJZ _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 745.421 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'NADPH DIHYDRO-NICOTINAMIDE-ADENINE-DINUCLEOTIDE PHOSPHATE' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 95.28 _cell.angle_gamma 90 _cell.entry_id 4QJZ _cell.length_a 36.771 _cell.length_b 42.813 _cell.length_c 61.114 _cell.Z_PDB 2 _cell.pdbx_unique_axis ? # _symmetry.entry_id 4QJZ _symmetry.cell_setting ? _symmetry.Int_Tables_number 4 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1 21 1' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 3 _struct_asym.id C _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _chem_comp.formula 'C21 H30 N7 O17 P3' _chem_comp.formula_weight 745.421 _chem_comp.id NDP _chem_comp.mon_nstd_flag . _chem_comp.name 'NADPH DIHYDRO-NICOTINAMIDE-ADENINE-DINUCLEOTIDE PHOSPHATE' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag PA O1A NDP doub 280 n n PA O2A NDP sing 281 n n PA O5B NDP sing 282 n n PA O3 NDP sing 283 n n O2A HOA2 NDP sing 284 n n O5B C5B NDP sing 285 n n C5B C4B NDP sing 286 n n C5B H51A NDP sing 287 n n C5B H52A NDP sing 288 n n C4B O4B NDP sing 289 n n C4B C3B NDP sing 290 n n C4B H4B NDP sing 291 n n O4B C1B NDP sing 292 n n C3B O3B NDP sing 293 n n C3B C2B NDP sing 294 n n C3B H3B NDP sing 295 n n O3B HO3A NDP sing 296 n n C2B O2B NDP sing 297 n n C2B C1B NDP sing 298 n n C2B H2B NDP sing 299 n n O2B P2B NDP sing 300 n n C1B N9A NDP sing 301 n n C1B H1B NDP sing 302 n n N9A C8A NDP sing 303 n y N9A C4A NDP sing 304 n y C8A N7A NDP doub 305 n y C8A H8A NDP sing 306 n n N7A C5A NDP sing 307 n y C5A C6A NDP sing 308 n y C5A C4A NDP doub 309 n y C6A N6A NDP sing 310 n n C6A N1A NDP doub 311 n y N6A H61A NDP sing 312 n n N6A H62A NDP sing 313 n n N1A C2A NDP sing 314 n y C2A N3A NDP doub 315 n y C2A H2A NDP sing 316 n n N3A C4A NDP sing 317 n y O3 PN NDP sing 318 n n PN O1N NDP doub 319 n n PN O2N NDP sing 320 n n PN O5D NDP sing 321 n n O2N H21N NDP sing 322 n n O5D C5D NDP sing 323 n n C5D C4D NDP sing 324 n n C5D H51N NDP sing 325 n n C5D H52N NDP sing 326 n n C4D O4D NDP sing 327 n n C4D C3D NDP sing 328 n n C4D H4D NDP sing 329 n n O4D C1D NDP sing 330 n n C3D O3D NDP sing 331 n n C3D C2D NDP sing 332 n n C3D H3D NDP sing 333 n n O3D HO3N NDP sing 334 n n C2D O2D NDP sing 335 n n C2D C1D NDP sing 336 n n C2D H2D NDP sing 337 n n O2D HO2N NDP sing 338 n n C1D N1N NDP sing 339 n n C1D H1D NDP sing 340 n n N1N C2N NDP sing 341 n n N1N C6N NDP sing 342 n n C2N C3N NDP doub 343 n n C2N H2N NDP sing 344 n n C3N C7N NDP sing 345 n n C3N C4N NDP sing 346 n n C7N O7N NDP doub 347 n n C7N N7N NDP sing 348 n n N7N H71N NDP sing 349 n n N7N H72N NDP sing 350 n n C4N C5N NDP sing 351 n n C4N H41N NDP sing 352 n n C4N H42N NDP sing 353 n n C5N C6N NDP doub 354 n n C5N H5N NDP sing 355 n n C6N H6N NDP sing 356 n n P2B O1X NDP doub 357 n n P2B O2X NDP sing 358 n n P2B O3X NDP sing 359 n n O2X HOP2 NDP sing 360 n n O3X HOP3 NDP sing 361 n n # _atom_sites.entry_id 4QJZ _atom_sites.fract_transf_matrix[1][1] 0.027195 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.002512 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.023357 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.016433 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 33M D 1 301 1 33M VI1 . C 3 NDP D 1 302 1 NDP NDP . D 4 HOH D 1 401 1 HOH HOH . D 4 HOH D 2 402 2 HOH HOH . D 4 HOH D 3 403 3 HOH HOH . D 4 HOH D 4 404 4 HOH HOH . D 4 HOH D 5 405 5 HOH HOH . D 4 HOH D 6 406 6 HOH HOH . D 4 HOH D 7 407 7 HOH HOH . D 4 HOH D 8 408 8 HOH HOH . D 4 HOH D 9 409 9 HOH HOH . D 4 HOH D 10 410 10 HOH HOH . D 4 HOH D 11 411 11 HOH HOH . D 4 HOH D 12 412 12 HOH HOH . D 4 HOH D 13 413 13 HOH HOH . D 4 HOH D 14 414 14 HOH HOH . D 4 HOH D 15 415 15 HOH HOH . D 4 HOH D 16 416 16 HOH HOH . D 4 HOH D 17 417 17 HOH HOH . D 4 HOH D 18 418 18 HOH HOH . D 4 HOH D 19 419 19 HOH HOH . D 4 HOH D 20 420 20 HOH HOH . D 4 HOH D 21 421 21 HOH HOH . D 4 HOH D 22 422 22 HOH HOH . D 4 HOH D 23 423 23 HOH HOH . D 4 HOH D 24 424 24 HOH HOH . D 4 HOH D 25 425 25 HOH HOH . D 4 HOH D 26 426 26 HOH HOH . D 4 HOH D 27 427 27 HOH HOH . D 4 HOH D 28 428 28 HOH HOH . D 4 HOH D 29 429 29 HOH HOH . D 4 HOH D 30 430 30 HOH HOH . D 4 HOH D 31 431 31 HOH HOH . D 4 HOH D 32 432 32 HOH HOH . D 4 HOH D 33 433 33 HOH HOH . D 4 HOH D 34 434 34 HOH HOH . D 4 HOH D 35 435 35 HOH HOH . D 4 HOH D 36 436 36 HOH HOH . D 4 HOH D 37 437 37 HOH HOH . D 4 HOH D 38 438 38 HOH HOH . D 4 HOH D 39 439 39 HOH HOH . D 4 HOH D 40 440 40 HOH HOH . D 4 HOH D 41 441 41 HOH HOH . D 4 HOH D 42 442 42 HOH HOH . D 4 HOH D 43 443 43 HOH HOH . D 4 HOH D 44 444 44 HOH HOH . D 4 HOH D 45 445 45 HOH HOH . D 4 HOH D 46 446 46 HOH HOH . D 4 HOH D 47 447 47 HOH HOH . D 4 HOH D 48 448 48 HOH HOH . D 4 HOH D 49 449 49 HOH HOH . D 4 HOH D 50 450 50 HOH HOH . D 4 HOH D 51 451 51 HOH HOH . D 4 HOH D 52 452 52 HOH HOH . D 4 HOH D 53 453 53 HOH HOH . D 4 HOH D 54 454 54 HOH HOH . D 4 HOH D 55 455 55 HOH HOH . D 4 HOH D 56 456 56 HOH HOH . D 4 HOH D 57 457 57 HOH HOH . D 4 HOH D 58 458 58 HOH HOH . D 4 HOH D 59 459 59 HOH HOH . D 4 HOH D 60 460 60 HOH HOH . D 4 HOH D 61 461 61 HOH HOH . D 4 HOH D 62 462 62 HOH HOH . D 4 HOH D 63 463 63 HOH HOH . D 4 HOH D 64 464 64 HOH HOH . D 4 HOH D 65 465 65 HOH HOH . D 4 HOH D 66 466 66 HOH HOH . D 4 HOH D 67 467 67 HOH HOH . D 4 HOH D 68 468 68 HOH HOH . D 4 HOH D 69 469 69 HOH HOH . D 4 HOH D 70 470 70 HOH HOH . D 4 HOH D 71 471 71 HOH HOH . D 4 HOH D 72 472 72 HOH HOH . D 4 HOH D 73 473 73 HOH HOH . D 4 HOH D 74 474 74 HOH HOH . D 4 HOH D 75 475 75 HOH HOH . D 4 HOH D 76 476 76 HOH HOH . D 4 HOH D 77 477 78 HOH HOH . D 4 HOH D 78 478 79 HOH HOH . D 4 HOH D 79 479 80 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 P PA NDP . . . C 3 15.316 4.525 23.01 1 20.72 ? PA NDP 302 D 1 HETATM 2 O O1A NDP . . . C 3 14.19 3.972 23.85 1 19.38 ? O1A NDP 302 D 1 HETATM 3 O O2A NDP . . . C 3 15.266 4.63 21.557 1 20.64 ? O2A NDP 302 D 1 HETATM 4 O O5B NDP . . . C 3 15.746 5.982 23.546 1 20.61 ? O5B NDP 302 D 1 HETATM 5 C C5B NDP . . . C 3 16.029 6.043 24.976 1 21.29 ? C5B NDP 302 D 1 HETATM 6 C C4B NDP . . . C 3 16.118 7.512 25.243 1 19.9 ? C4B NDP 302 D 1 HETATM 7 O O4B NDP . . . C 3 14.856 8.013 24.843 1 18.97 ? O4B NDP 302 D 1 HETATM 8 C C3B NDP . . . C 3 16.269 7.864 26.705 1 21.64 ? C3B NDP 302 D 1 HETATM 9 O O3B NDP . . . C 3 17.696 8.014 26.935 1 21.83 ? O3B NDP 302 D 1 HETATM 10 C C2B NDP . . . C 3 15.533 9.167 26.79 1 20.55 ? C2B NDP 302 D 1 HETATM 11 O O2B NDP . . . C 3 16.101 10.237 26.066 1 20.77 ? O2B NDP 302 D 1 HETATM 12 C C1B NDP . . . C 3 14.327 8.893 25.867 1 19.92 ? C1B NDP 302 D 1 HETATM 13 N N9A NDP . . . C 3 13.213 8.07 26.455 1 20.91 ? N9A NDP 302 D 1 HETATM 14 C C8A NDP . . . C 3 12.834 6.831 26.076 1 23.36 ? C8A NDP 302 D 1 HETATM 15 N N7A NDP . . . C 3 11.757 6.499 26.812 1 21.69 ? N7A NDP 302 D 1 HETATM 16 C C5A NDP . . . C 3 11.463 7.561 27.593 1 24.13 ? C5A NDP 302 D 1 HETATM 17 C C6A NDP . . . C 3 10.493 7.8 28.484 1 23.94 ? C6A NDP 302 D 1 HETATM 18 N N6A NDP . . . C 3 9.593 6.821 28.718 1 32.5 ? N6A NDP 302 D 1 HETATM 19 N N1A NDP . . . C 3 10.423 8.954 29.165 1 24.01 ? N1A NDP 302 D 1 HETATM 20 C C2A NDP . . . C 3 11.332 9.975 28.931 1 23.42 ? C2A NDP 302 D 1 HETATM 21 N N3A NDP . . . C 3 12.326 9.716 28.026 1 22.19 ? N3A NDP 302 D 1 HETATM 22 C C4A NDP . . . C 3 12.377 8.521 27.37 1 21.96 ? C4A NDP 302 D 1 HETATM 23 O O3 NDP . . . C 3 16.611 3.558 23.333 1 20.92 ? O3 NDP 302 D 1 HETATM 24 P PN NDP . . . C 3 16.998 2.171 23.786 1 22.81 ? PN NDP 302 D 1 HETATM 25 O O1N NDP . . . C 3 16.05 1.582 24.769 1 22.79 ? O1N NDP 302 D 1 HETATM 26 O O2N NDP . . . C 3 18.469 2.085 24.15 1 26.78 ? O2N NDP 302 D 1 HETATM 27 O O5D NDP . . . C 3 16.836 1.365 22.452 1 20.54 ? O5D NDP 302 D 1 HETATM 28 C C5D NDP . . . C 3 17.75 1.598 21.342 1 19.41 ? C5D NDP 302 D 1 HETATM 29 C C4D NDP . . . C 3 17.954 0.215 20.692 1 20.2 ? C4D NDP 302 D 1 HETATM 30 O O4D NDP . . . C 3 16.688 -0.156 20.197 1 20.7 ? O4D NDP 302 D 1 HETATM 31 C C3D NDP . . . C 3 18.916 0.265 19.401 1 18.28 ? C3D NDP 302 D 1 HETATM 32 O O3D NDP . . . C 3 19.73 -0.921 19.388 1 18.47 ? O3D NDP 302 D 1 HETATM 33 C C2D NDP . . . C 3 17.953 0.386 18.231 1 18.39 ? C2D NDP 302 D 1 HETATM 34 O O2D NDP . . . C 3 18.58 -0.062 16.921 1 17.82 ? O2D NDP 302 D 1 HETATM 35 C C1D NDP . . . C 3 16.932 -0.647 18.774 1 19.11 ? C1D NDP 302 D 1 HETATM 36 N N1N NDP . . . C 3 15.616 -0.569 18.07 1 18.13 ? N1N NDP 302 D 1 HETATM 37 C C2N NDP . . . C 3 15.097 -1.731 17.478 1 16.55 ? C2N NDP 302 D 1 HETATM 38 C C3N NDP . . . C 3 13.85 -1.658 16.86 1 16.96 ? C3N NDP 302 D 1 HETATM 39 C C7N NDP . . . C 3 13.323 -2.842 16.296 1 16.73 ? C7N NDP 302 D 1 HETATM 40 O O7N NDP . . . C 3 12.151 -2.873 15.865 1 17.55 ? O7N NDP 302 D 1 HETATM 41 N N7N NDP . . . C 3 14.11 -3.928 16.304 1 16.5 ? N7N NDP 302 D 1 HETATM 42 C C4N NDP . . . C 3 13.204 -0.428 16.685 1 16.25 ? C4N NDP 302 D 1 HETATM 43 C C5N NDP . . . C 3 13.705 0.755 17.306 1 17.92 ? C5N NDP 302 D 1 HETATM 44 C C6N NDP . . . C 3 14.932 0.668 17.932 1 17.16 ? C6N NDP 302 D 1 HETATM 45 P P2B NDP . . . C 3 17.156 11.415 26.716 1 22.18 ? P2B NDP 302 D 1 HETATM 46 O O1X NDP . . . C 3 16.364 12.066 27.931 1 21.32 ? O1X NDP 302 D 1 HETATM 47 O O2X NDP . . . C 3 18.239 10.486 27.293 1 20.17 ? O2X NDP 302 D 1 HETATM 48 O O3X NDP . . . C 3 17.574 12.282 25.607 1 20.16 ? O3X NDP 302 D 1 # _model_server_stats.io_time_ms 6 _model_server_stats.parse_time_ms 18 _model_server_stats.create_model_time_ms 2 _model_server_stats.query_time_ms 295 _model_server_stats.encode_time_ms 3 _model_server_stats.element_count 48 #