data_4QK7 # _model_server_result.job_id ZPw8O6nzywc6706uFJOx6w _model_server_result.datetime_utc '2025-01-11 06:19:47' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 4qk7 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"D","auth_seq_id":103}' # _entry.id 4QK7 # _exptl.entry_id 4QK7 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 40.078 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'CALCIUM ION' _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 4QK7 _cell.length_a 29.536 _cell.length_b 29.536 _cell.length_c 66.853 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 4QK7 _symmetry.cell_setting ? _symmetry.Int_Tables_number 79 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'I 4' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details tetrameric _pdbx_struct_assembly.oligomeric_count 4 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2,3,4 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 2_555 -x,-y,z -1 0 0 0 -1 0 0 0 1 0 0 0 3 'crystal symmetry operation' 3_555 -y,x,z 0 -1 0 1 0 0 0 0 1 0 0 0 4 'crystal symmetry operation' 4_555 y,-x,z 0 1 0 -1 0 0 0 0 1 0 0 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 B N N ? 2 D N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order covale ? covale1 A C ACE 1 A ACE 21 1_555 A N SER 2 A SER 22 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.381 ? covale ? covale2 A C LEU 26 A LEU 46 1_555 A N NH2 27 A NH2 47 1_555 ? A ? ? A ? ? ? ? ? ? ? 1.332 ? covale ? covale3 A C LEU 26 A LEU 46 1_555 A N NH2 27 A NH2 47 1_555 ? B ? ? B ? ? ? ? ? ? ? 1.325 ? metalc ? metalc1 A O SER 2 A SER 22 1_555 B CA CA . A CA 101 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.449 ? metalc ? metalc2 A OD1 ASP 4 A ASP 24 1_555 D CA CA . A CA 103 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.565 ? metalc ? metalc3 B CA CA . A CA 101 1_555 H O HOH . A HOH 201 1_555 ? ? ? ? A ? ? ? ? ? ? ? 2.429 ? metalc ? metalc4 B CA CA . A CA 101 1_555 H O HOH . A HOH 232 1_555 ? ? ? ? B ? ? ? ? ? ? ? 2.697 ? metalc ? metalc5 D CA CA . A CA 103 1_555 F O25 OLB . A OLB 105 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.023 ? metalc ? metalc6 D CA CA . A CA 103 1_555 F O23 OLB . A OLB 105 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.663 ? metalc ? metalc7 D CA CA . A CA 103 1_555 H O HOH . A HOH 207 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.393 ? metalc ? metalc8 D CA CA . A CA 103 1_555 H O HOH . A HOH 212 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.547 ? metalc ? metalc9 D CA CA . A CA 103 1_555 H O HOH . A HOH 213 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.406 ? # _chem_comp.formula 'Ca 2' _chem_comp.formula_weight 40.078 _chem_comp.id CA _chem_comp.mon_nstd_flag . _chem_comp.name 'CALCIUM ION' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # _atom_sites.entry_id 4QK7 _atom_sites.fract_transf_matrix[1][1] 0.033857 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.033857 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.014958 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 CA A 1 101 1 CA CA . C 3 CL A 1 102 1 CL CL . D 2 CA A 1 103 1 CA CA . E 4 EDO A 1 104 1 EDO EDO . F 5 OLB A 1 105 1 OLB OLB . G 5 OLB A 1 106 1 OLB OLB . H 6 HOH A 1 201 1 HOH HOH . H 6 HOH A 2 202 2 HOH HOH . H 6 HOH A 3 203 3 HOH HOH . H 6 HOH A 4 204 4 HOH HOH . H 6 HOH A 5 205 5 HOH HOH . H 6 HOH A 6 206 6 HOH HOH . H 6 HOH A 7 207 7 HOH HOH . H 6 HOH A 8 208 8 HOH HOH . H 6 HOH A 9 209 9 HOH HOH . H 6 HOH A 10 210 10 HOH HOH . H 6 HOH A 11 211 11 HOH HOH . H 6 HOH A 12 212 12 HOH HOH . H 6 HOH A 13 213 13 HOH HOH . H 6 HOH A 14 214 14 HOH HOH . H 6 HOH A 15 215 15 HOH HOH . H 6 HOH A 16 216 16 HOH HOH . H 6 HOH A 17 217 17 HOH HOH . H 6 HOH A 18 218 18 HOH HOH . H 6 HOH A 19 219 19 HOH HOH . H 6 HOH A 20 220 20 HOH HOH . H 6 HOH A 21 221 21 HOH HOH . H 6 HOH A 22 222 22 HOH HOH . H 6 HOH A 23 223 23 HOH HOH . H 6 HOH A 24 224 24 HOH HOH . H 6 HOH A 25 225 25 HOH HOH . H 6 HOH A 26 226 26 HOH HOH . H 6 HOH A 27 227 27 HOH HOH . H 6 HOH A 28 228 28 HOH HOH . H 6 HOH A 29 229 29 HOH HOH . H 6 HOH A 30 230 30 HOH HOH . H 6 HOH A 31 231 31 HOH HOH . H 6 HOH A 32 232 32 HOH HOH . # _atom_site.group_PDB HETATM _atom_site.id 1 _atom_site.type_symbol CA _atom_site.label_atom_id CA _atom_site.label_comp_id CA _atom_site.label_seq_id . _atom_site.label_alt_id . _atom_site.pdbx_PDB_ins_code . _atom_site.label_asym_id D _atom_site.label_entity_id 2 _atom_site.Cartn_x -6.012 _atom_site.Cartn_y -8.485 _atom_site.Cartn_z 16.876 _atom_site.occupancy 0.3 _atom_site.B_iso_or_equiv 13.62 _atom_site.pdbx_formal_charge ? _atom_site.auth_atom_id CA _atom_site.auth_comp_id CA _atom_site.auth_seq_id 103 _atom_site.auth_asym_id A _atom_site.pdbx_PDB_model_num 1 # _model_server_stats.io_time_ms 6 _model_server_stats.parse_time_ms 7 _model_server_stats.create_model_time_ms 2 _model_server_stats.query_time_ms 296 _model_server_stats.encode_time_ms 1 _model_server_stats.element_count 1 #