data_4QK7 # _model_server_result.job_id KGJN2bT1GcPficirCWZeGw _model_server_result.datetime_utc '2025-01-11 06:09:18' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 4qk7 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"G","auth_seq_id":106}' # _entry.id 4QK7 # _exptl.entry_id 4QK7 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 356.54 _entity.id 5 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description '(2S)-2,3-dihydroxypropyl (9Z)-octadec-9-enoate' _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 4QK7 _cell.length_a 29.536 _cell.length_b 29.536 _cell.length_c 66.853 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 4QK7 _symmetry.cell_setting ? _symmetry.Int_Tables_number 79 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'I 4' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details tetrameric _pdbx_struct_assembly.oligomeric_count 4 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2,3,4 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 2_555 -x,-y,z -1 0 0 0 -1 0 0 0 1 0 0 0 3 'crystal symmetry operation' 3_555 -y,x,z 0 -1 0 1 0 0 0 0 1 0 0 0 4 'crystal symmetry operation' 4_555 y,-x,z 0 1 0 -1 0 0 0 0 1 0 0 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 5 F N N ? 5 G N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order covale ? covale1 A C ACE 1 A ACE 21 1_555 A N SER 2 A SER 22 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.381 ? covale ? covale2 A C LEU 26 A LEU 46 1_555 A N NH2 27 A NH2 47 1_555 ? A ? ? A ? ? ? ? ? ? ? 1.332 ? covale ? covale3 A C LEU 26 A LEU 46 1_555 A N NH2 27 A NH2 47 1_555 ? B ? ? B ? ? ? ? ? ? ? 1.325 ? metalc ? metalc1 A O SER 2 A SER 22 1_555 B CA CA . A CA 101 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.449 ? metalc ? metalc2 A OD1 ASP 4 A ASP 24 1_555 D CA CA . A CA 103 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.565 ? metalc ? metalc3 B CA CA . A CA 101 1_555 H O HOH . A HOH 201 1_555 ? ? ? ? A ? ? ? ? ? ? ? 2.429 ? metalc ? metalc4 B CA CA . A CA 101 1_555 H O HOH . A HOH 232 1_555 ? ? ? ? B ? ? ? ? ? ? ? 2.697 ? metalc ? metalc5 D CA CA . A CA 103 1_555 F O25 OLB . A OLB 105 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.023 ? metalc ? metalc6 D CA CA . A CA 103 1_555 F O23 OLB . A OLB 105 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.663 ? metalc ? metalc7 D CA CA . A CA 103 1_555 H O HOH . A HOH 207 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.393 ? metalc ? metalc8 D CA CA . A CA 103 1_555 H O HOH . A HOH 212 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.547 ? metalc ? metalc9 D CA CA . A CA 103 1_555 H O HOH . A HOH 213 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.406 ? # _chem_comp.formula 'C21 H40 O4' _chem_comp.formula_weight 356.54 _chem_comp.id OLB _chem_comp.mon_nstd_flag . _chem_comp.name '(2S)-2,3-dihydroxypropyl (9Z)-octadec-9-enoate' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 O19 OLB doub 145 n n C1 O20 OLB sing 146 n n C2 C1 OLB sing 147 n n C3 C2 OLB sing 148 n n C4 C3 OLB sing 149 n n C5 C4 OLB sing 150 n n C5 C6 OLB sing 151 n n O20 C21 OLB sing 152 n n C21 C22 OLB sing 153 n n C22 C24 OLB sing 154 n n O23 C22 OLB sing 155 n n C24 O25 OLB sing 156 n n C6 C7 OLB sing 157 n n C7 C8 OLB sing 158 n n C8 C9 OLB sing 159 n n C9 C10 OLB doub 160 z n C10 C11 OLB sing 161 n n C2 H2 OLB sing 162 n n C2 H2A OLB sing 163 n n C3 H3 OLB sing 164 n n C3 H3A OLB sing 165 n n C4 H4 OLB sing 166 n n C4 H4A OLB sing 167 n n C5 H5 OLB sing 168 n n C5 H5A OLB sing 169 n n C21 H21 OLB sing 170 n n C21 H21A OLB sing 171 n n C22 H22 OLB sing 172 n n O23 HO23 OLB sing 173 n n C24 H24 OLB sing 174 n n C24 H24A OLB sing 175 n n O25 HO25 OLB sing 176 n n C6 H16 OLB sing 177 n n C6 H17 OLB sing 178 n n C7 H18 OLB sing 179 n n C7 H19 OLB sing 180 n n C8 H20 OLB sing 181 n n C8 H211 OLB sing 182 n n C9 H221 OLB sing 183 n n C10 H23 OLB sing 184 n n C11 H241 OLB sing 185 n n C11 H25 OLB sing 186 n n C11 C12 OLB sing 187 n n C12 H26 OLB sing 188 n n C12 C13 OLB sing 189 n n C12 H27 OLB sing 190 n n C13 C14 OLB sing 191 n n C13 H28 OLB sing 192 n n C13 H29 OLB sing 193 n n C14 H30 OLB sing 194 n n C14 H31 OLB sing 195 n n C14 C15 OLB sing 196 n n C15 C16 OLB sing 197 n n C15 H32 OLB sing 198 n n C15 H33 OLB sing 199 n n C16 H34 OLB sing 200 n n C16 H35 OLB sing 201 n n C16 C17 OLB sing 202 n n C17 C18 OLB sing 203 n n C17 H36 OLB sing 204 n n C17 H37 OLB sing 205 n n C18 H38 OLB sing 206 n n C18 H39 OLB sing 207 n n C18 H40 OLB sing 208 n n # _atom_sites.entry_id 4QK7 _atom_sites.fract_transf_matrix[1][1] 0.033857 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.033857 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.014958 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 CA A 1 101 1 CA CA . C 3 CL A 1 102 1 CL CL . D 2 CA A 1 103 1 CA CA . E 4 EDO A 1 104 1 EDO EDO . F 5 OLB A 1 105 1 OLB OLB . G 5 OLB A 1 106 1 OLB OLB . H 6 HOH A 1 201 1 HOH HOH . H 6 HOH A 2 202 2 HOH HOH . H 6 HOH A 3 203 3 HOH HOH . H 6 HOH A 4 204 4 HOH HOH . H 6 HOH A 5 205 5 HOH HOH . H 6 HOH A 6 206 6 HOH HOH . H 6 HOH A 7 207 7 HOH HOH . H 6 HOH A 8 208 8 HOH HOH . H 6 HOH A 9 209 9 HOH HOH . H 6 HOH A 10 210 10 HOH HOH . H 6 HOH A 11 211 11 HOH HOH . H 6 HOH A 12 212 12 HOH HOH . H 6 HOH A 13 213 13 HOH HOH . H 6 HOH A 14 214 14 HOH HOH . H 6 HOH A 15 215 15 HOH HOH . H 6 HOH A 16 216 16 HOH HOH . H 6 HOH A 17 217 17 HOH HOH . H 6 HOH A 18 218 18 HOH HOH . H 6 HOH A 19 219 19 HOH HOH . H 6 HOH A 20 220 20 HOH HOH . H 6 HOH A 21 221 21 HOH HOH . H 6 HOH A 22 222 22 HOH HOH . H 6 HOH A 23 223 23 HOH HOH . H 6 HOH A 24 224 24 HOH HOH . H 6 HOH A 25 225 25 HOH HOH . H 6 HOH A 26 226 26 HOH HOH . H 6 HOH A 27 227 27 HOH HOH . H 6 HOH A 28 228 28 HOH HOH . H 6 HOH A 29 229 29 HOH HOH . H 6 HOH A 30 230 30 HOH HOH . H 6 HOH A 31 231 31 HOH HOH . H 6 HOH A 32 232 32 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 OLB . . . G 5 3.149 -11.874 11.646 0.94 46.65 ? C1 OLB 106 A 1 HETATM 2 C C2 OLB . . . G 5 4.161 -11.813 10.523 0.94 49.5 ? C2 OLB 106 A 1 HETATM 3 C C3 OLB . . . G 5 3.577 -12.451 9.282 0.94 39.88 ? C3 OLB 106 A 1 HETATM 4 C C4 OLB . . . G 5 4.628 -12.498 8.196 0.94 50.48 ? C4 OLB 106 A 1 HETATM 5 C C5 OLB . . . G 5 3.986 -12.909 6.889 0.94 56.58 ? C5 OLB 106 A 1 HETATM 6 O O19 OLB . . . G 5 2.021 -12.267 11.426 0.94 86.62 ? O19 OLB 106 A 1 HETATM 7 O O20 OLB . . . G 5 3.496 -11.417 12.929 0.94 59.44 ? O20 OLB 106 A 1 HETATM 8 C C21 OLB . . . G 5 3.407 -12.404 13.929 0.94 92.14 ? C21 OLB 106 A 1 HETATM 9 C C22 OLB . . . G 5 3.068 -11.756 15.252 0.94 118.83 ? C22 OLB 106 A 1 HETATM 10 O O23 OLB . . . G 5 2.979 -12.767 16.238 0.94 93.99 ? O23 OLB 106 A 1 HETATM 11 C C24 OLB . . . G 5 4.151 -10.755 15.597 0.94 70.43 ? C24 OLB 106 A 1 HETATM 12 O O25 OLB . . . G 5 3.784 -9.483 15.11 0.94 29.37 ? O25 OLB 106 A 1 HETATM 13 C C6 OLB . . . G 5 4.988 -12.756 5.765 0.94 47.66 ? C6 OLB 106 A 1 HETATM 14 C C7 OLB . . . G 5 4.415 -13.346 4.495 0.94 55.2 ? C7 OLB 106 A 1 HETATM 15 C C8 OLB . . . G 5 5.297 -12.973 3.323 0.94 142.21 ? C8 OLB 106 A 1 HETATM 16 C C9 OLB . . . G 5 4.73 -13.572 2.055 0.94 115.08 ? C9 OLB 106 A 1 HETATM 17 C C10 OLB . . . G 5 5.024 -13.022 0.861 0.94 57.54 ? C10 OLB 106 A 1 HETATM 18 C C11 OLB . . . G 5 4.868 -11.53 0.657 0.94 80.97 ? C11 OLB 106 A 1 HETATM 19 H H2 OLB . . . G 5 4.384 -10.88 10.332 0.94 59.4 ? H2 OLB 106 A 1 HETATM 20 H H2A OLB . . . G 5 4.967 -12.303 10.783 0.94 59.4 ? H2A OLB 106 A 1 HETATM 21 H H3 OLB . . . G 5 3.277 -13.359 9.488 0.94 47.85 ? H3 OLB 106 A 1 HETATM 22 H H3A OLB . . . G 5 2.817 -11.918 8.974 0.94 47.85 ? H3A OLB 106 A 1 HETATM 23 H H4 OLB . . . G 5 5.322 -13.142 8.44 0.94 60.57 ? H4 OLB 106 A 1 HETATM 24 H H4A OLB . . . G 5 5.034 -11.613 8.102 0.94 60.57 ? H4A OLB 106 A 1 HETATM 25 H H5 OLB . . . G 5 3.696 -13.841 6.945 0.94 67.89 ? H5 OLB 106 A 1 HETATM 26 H H5A OLB . . . G 5 3.202 -12.351 6.714 0.94 67.89 ? H5A OLB 106 A 1 HETATM 27 H H21 OLB . . . G 5 2.702 -13.042 13.693 0.94 110.57 ? H21 OLB 106 A 1 HETATM 28 H H21A OLB . . . G 5 4.263 -12.876 14.002 0.94 110.57 ? H21A OLB 106 A 1 HETATM 29 H H22 OLB . . . G 5 2.209 -11.295 15.179 0.94 142.59 ? H22 OLB 106 A 1 HETATM 30 H HO23 OLB . . . G 5 2.837 -12.394 17.032 0.94 112.79 ? HO23 OLB 106 A 1 HETATM 31 H H24 OLB . . . G 5 4.26 -10.714 16.57 0.94 84.51 ? H24 OLB 106 A 1 HETATM 32 H H24A OLB . . . G 5 4.996 -11.032 15.185 0.94 84.51 ? H24A OLB 106 A 1 HETATM 33 H HO25 OLB . . . G 5 3.457 -9.564 14.287 0.94 35.24 ? HO25 OLB 106 A 1 HETATM 34 H H16 OLB . . . G 5 5.173 -11.806 5.625 0.94 57.19 ? H16 OLB 106 A 1 HETATM 35 H H17 OLB . . . G 5 5.817 -13.219 5.998 0.94 57.19 ? H17 OLB 106 A 1 HETATM 36 H H18 OLB . . . G 5 4.365 -14.319 4.575 0.94 66.24 ? H18 OLB 106 A 1 HETATM 37 H H19 OLB . . . G 5 3.518 -12.985 4.35 0.94 66.24 ? H19 OLB 106 A 1 HETATM 38 H H20 OLB . . . G 5 5.334 -12 3.231 0.94 170.65 ? H20 OLB 106 A 1 HETATM 39 H H211 OLB . . . G 5 6.202 -13.313 3.469 0.94 170.65 ? H211 OLB 106 A 1 HETATM 40 H H221 OLB . . . G 5 4.318 -14.456 2.087 0.94 138.09 ? H221 OLB 106 A 1 HETATM 41 C C12 OLB . . . G 5 4.988 -11.207 -0.816 0.94 48.26 ? C12 OLB 106 A 1 HETATM 42 H H23 OLB . . . G 5 5.095 -13.601 0.078 0.94 69.05 ? H23 OLB 106 A 1 HETATM 43 H H241 OLB . . . G 5 3.989 -11.247 0.98 0.94 97.16 ? H241 OLB 106 A 1 HETATM 44 C C13 OLB . . . G 5 4.602 -9.762 -1.047 0.94 49.63 ? C13 OLB 106 A 1 HETATM 45 H H25 OLB . . . G 5 5.566 -11.058 1.154 0.94 97.16 ? H25 OLB 106 A 1 HETATM 46 C C14 OLB . . . G 5 4.992 -9.353 -2.451 0.94 38.26 ? C14 OLB 106 A 1 HETATM 47 H H26 OLB . . . G 5 4.395 -11.791 -1.33 0.94 57.91 ? H26 OLB 106 A 1 HETATM 48 H H27 OLB . . . G 5 5.912 -11.346 -1.103 0.94 57.91 ? H27 OLB 106 A 1 HETATM 49 H H28 OLB . . . G 5 3.638 -9.653 -0.927 0.94 59.55 ? H28 OLB 106 A 1 HETATM 50 C C15 OLB . . . G 5 4.089 -10.043 -3.45 0.94 34.36 ? C15 OLB 106 A 1 HETATM 51 H H29 OLB . . . G 5 5.076 -9.197 -0.404 0.94 59.55 ? H29 OLB 106 A 1 HETATM 52 C C16 OLB . . . G 5 4.293 -9.433 -4.819 0.94 55.54 ? C16 OLB 106 A 1 HETATM 53 H H30 OLB . . . G 5 4.889 -8.385 -2.543 0.94 45.91 ? H30 OLB 106 A 1 HETATM 54 H H31 OLB . . . G 5 5.923 -9.599 -2.62 0.94 45.91 ? H31 OLB 106 A 1 HETATM 55 H H32 OLB . . . G 5 4.306 -10.996 -3.48 0.94 41.23 ? H32 OLB 106 A 1 HETATM 56 C C17 OLB . . . G 5 3.586 -10.277 -5.858 0.94 35.97 ? C17 OLB 106 A 1 HETATM 57 H H33 OLB . . . G 5 3.156 -9.93 -3.18 0.94 41.23 ? H33 OLB 106 A 1 HETATM 58 C C18 OLB . . . G 5 3.584 -9.547 -7.183 0.94 58 ? C18 OLB 106 A 1 HETATM 59 H H34 OLB . . . G 5 3.924 -8.527 -4.828 0.94 66.65 ? H34 OLB 106 A 1 HETATM 60 H H35 OLB . . . G 5 5.249 -9.398 -5.024 0.94 66.65 ? H35 OLB 106 A 1 HETATM 61 H H36 OLB . . . G 5 4.048 -11.133 -5.954 0.94 43.16 ? H36 OLB 106 A 1 HETATM 62 H H37 OLB . . . G 5 2.663 -10.435 -5.575 0.94 43.16 ? H37 OLB 106 A 1 HETATM 63 H H38 OLB . . . G 5 3.239 -10.14 -7.882 0.94 69.6 ? H38 OLB 106 A 1 HETATM 64 H H39 OLB . . . G 5 4.498 -9.275 -7.407 0.94 69.6 ? H39 OLB 106 A 1 HETATM 65 H H40 OLB . . . G 5 3.014 -8.753 -7.118 0.94 69.6 ? H40 OLB 106 A 1 # _model_server_stats.io_time_ms 103 _model_server_stats.parse_time_ms 7 _model_server_stats.create_model_time_ms 2 _model_server_stats.query_time_ms 244 _model_server_stats.encode_time_ms 3 _model_server_stats.element_count 65 #