data_4QKB # _model_server_result.job_id ZjWj3vr6fCRBk-KeIMejug _model_server_result.datetime_utc '2024-11-27 06:22:18' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 4qkb # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"H","auth_seq_id":301}' # _entry.id 4QKB # _exptl.entry_id 4QKB _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 54.938 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'MANGANESE (II) ION' _entity.pdbx_number_of_molecules 7 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 119.95 _cell.angle_gamma 90 _cell.entry_id 4QKB _cell.length_a 66.737 _cell.length_b 82.759 _cell.length_c 66.724 _cell.Z_PDB 6 _cell.pdbx_unique_axis ? # _symmetry.entry_id 4QKB _symmetry.cell_setting ? _symmetry.Int_Tables_number 4 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1 21 1' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id ? monomeric 1 author_defined_assembly 1 ? monomeric 1 author_defined_assembly 2 ? monomeric 1 author_defined_assembly 3 PISA trimeric 3 software_defined_assembly 4 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,D,E,F,G,N 1 1 B,H,I,J,O 2 1 C,K,L,M,P 3 1 A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P 4 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 D N N ? 2 F N N ? 2 G N N ? 2 H N N ? 2 J N N ? 2 K N N ? 2 M N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order covale ? covale1 A C MSE 1 A MSE 16 1_555 A N TRP 2 A TRP 17 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.327 ? covale ? covale2 A C SER 70 A SER 85 1_555 A N MSE 71 A MSE 86 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.334 ? covale ? covale3 A C MSE 71 A MSE 86 1_555 A N ALA 72 A ALA 87 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.332 ? covale ? covale4 A C ILE 73 A ILE 88 1_555 A N MSE 74 A MSE 89 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.335 ? covale ? covale5 A C MSE 74 A MSE 89 1_555 A N ARG 75 A ARG 90 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.332 ? covale ? covale6 A C VAL 127 A VAL 142 1_555 A N MSE 128 A MSE 143 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.33 ? covale ? covale7 A C MSE 128 A MSE 143 1_555 A N ARG 129 A ARG 144 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.331 ? covale ? covale8 B C MSE 1 B MSE 16 1_555 B N TRP 2 B TRP 17 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.332 ? covale ? covale9 B C SER 70 B SER 85 1_555 B N MSE 71 B MSE 86 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.336 ? covale ? covale10 B C MSE 71 B MSE 86 1_555 B N ALA 72 B ALA 87 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.332 ? covale ? covale11 B C ILE 73 B ILE 88 1_555 B N MSE 74 B MSE 89 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.336 ? covale ? covale12 B C MSE 74 B MSE 89 1_555 B N ARG 75 B ARG 90 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.335 ? covale ? covale13 B C VAL 127 B VAL 142 1_555 B N MSE 128 B MSE 143 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.328 ? covale ? covale14 B C MSE 128 B MSE 143 1_555 B N ARG 129 B ARG 144 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.325 ? covale ? covale15 C C MSE 1 C MSE 16 1_555 C N TRP 2 C TRP 17 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.336 ? covale ? covale16 C C SER 70 C SER 85 1_555 C N MSE 71 C MSE 86 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.331 ? covale ? covale17 C C MSE 71 C MSE 86 1_555 C N ALA 72 C ALA 87 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.333 ? covale ? covale18 C C ILE 73 C ILE 88 1_555 C N MSE 74 C MSE 89 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.333 ? covale ? covale19 C C MSE 74 C MSE 89 1_555 C N ARG 75 C ARG 90 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.331 ? covale ? covale20 C C VAL 127 C VAL 142 1_555 C N MSE 128 C MSE 143 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.334 ? covale ? covale21 C C MSE 128 C MSE 143 1_555 C N ARG 129 C ARG 144 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.332 ? metalc ? metalc1 A OE2 GLU 47 A GLU 62 1_555 F MN MN . A MN 303 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.457 ? metalc ? metalc2 A NE2 HIS 50 A HIS 65 1_555 M MN MN . C MN 303 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.596 ? metalc ? metalc3 A OE2 GLU 60 A GLU 75 1_555 F MN MN . A MN 303 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.427 ? metalc ? metalc4 A NE2 HIS 106 A HIS 121 1_555 D MN MN . A MN 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.132 ? metalc ? metalc5 A OD1 ASP 108 A ASP 123 1_555 D MN MN . A MN 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.966 ? metalc ? metalc6 A NE2 HIS 162 A HIS 177 1_555 D MN MN . A MN 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.964 ? metalc ? metalc7 A OE1 GLU 174 A GLU 189 1_555 G MN MN . A MN 304 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.118 ? metalc ? metalc8 D MN MN . A MN 301 1_555 E O5 AKG . A AKG 302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.152 ? metalc ? metalc9 D MN MN . A MN 301 1_555 E O2 AKG . A AKG 302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.16 ? metalc ? metalc10 F MN MN . A MN 303 1_555 B NE2 HIS 50 B HIS 65 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.388 ? metalc ? metalc11 B OE2 GLU 47 B GLU 62 1_555 J MN MN . B MN 303 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.208 ? metalc ? metalc12 B OE2 GLU 60 B GLU 75 1_555 J MN MN . B MN 303 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.359 ? metalc ? metalc13 B NE2 HIS 106 B HIS 121 1_555 H MN MN . B MN 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.281 ? metalc ? metalc14 B OD1 ASP 108 B ASP 123 1_555 H MN MN . B MN 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.975 ? metalc ? metalc15 B NE2 HIS 162 B HIS 177 1_555 H MN MN . B MN 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.087 ? metalc ? metalc16 H MN MN . B MN 301 1_555 I O5 AKG . B AKG 302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.875 ? metalc ? metalc17 H MN MN . B MN 301 1_555 I O2 AKG . B AKG 302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.242 ? metalc ? metalc18 J MN MN . B MN 303 1_555 C NE2 HIS 50 C HIS 65 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.53 ? metalc ? metalc19 C OE2 GLU 47 C GLU 62 1_555 M MN MN . C MN 303 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.458 ? metalc ? metalc20 C OE2 GLU 60 C GLU 75 1_555 M MN MN . C MN 303 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.296 ? metalc ? metalc21 C NE2 HIS 106 C HIS 121 1_555 K MN MN . C MN 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.187 ? metalc ? metalc22 C OD1 ASP 108 C ASP 123 1_555 K MN MN . C MN 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.963 ? metalc ? metalc23 C NE2 HIS 162 C HIS 177 1_555 K MN MN . C MN 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.009 ? metalc ? metalc24 K MN MN . C MN 301 1_555 L O5 AKG . C AKG 302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.08 ? metalc ? metalc25 K MN MN . C MN 301 1_555 L O2 AKG . C AKG 302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.209 ? # _chem_comp.formula 'Mn 2' _chem_comp.formula_weight 54.938 _chem_comp.id MN _chem_comp.mon_nstd_flag . _chem_comp.name 'MANGANESE (II) ION' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # _atom_sites.entry_id 4QKB _atom_sites.fract_transf_matrix[1][1] 0.014984 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.008634 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.012083 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.017297 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code D 2 MN A 1 301 300 MN MN . E 3 AKG A 1 302 301 AKG AKG . F 2 MN A 1 303 1 MN MN . G 2 MN A 1 304 4 MN MN . H 2 MN B 1 301 300 MN MN . I 3 AKG B 1 302 301 AKG AKG . J 2 MN B 1 303 2 MN MN . K 2 MN C 1 301 300 MN MN . L 3 AKG C 1 302 301 AKG AKG . M 2 MN C 1 303 3 MN MN . N 4 HOH A 1 401 1 HOH HOH . N 4 HOH A 2 402 9 HOH HOH . N 4 HOH A 3 403 11 HOH HOH . N 4 HOH A 4 404 16 HOH HOH . N 4 HOH A 5 405 32 HOH HOH . N 4 HOH A 6 406 38 HOH HOH . N 4 HOH A 7 407 41 HOH HOH . N 4 HOH A 8 408 50 HOH HOH . N 4 HOH A 9 409 72 HOH HOH . N 4 HOH A 10 410 78 HOH HOH . N 4 HOH A 11 411 94 HOH HOH . N 4 HOH A 12 412 105 HOH HOH . N 4 HOH A 13 413 135 HOH HOH . N 4 HOH A 14 414 136 HOH HOH . N 4 HOH A 15 415 143 HOH HOH . N 4 HOH A 16 416 148 HOH HOH . N 4 HOH A 17 417 156 HOH HOH . N 4 HOH A 18 418 163 HOH HOH . N 4 HOH A 19 419 189 HOH HOH . N 4 HOH A 20 420 196 HOH HOH . N 4 HOH A 21 421 209 HOH HOH . N 4 HOH A 22 422 215 HOH HOH . O 4 HOH B 1 401 8 HOH HOH . O 4 HOH B 2 402 14 HOH HOH . O 4 HOH B 3 403 15 HOH HOH . O 4 HOH B 4 404 19 HOH HOH . O 4 HOH B 5 405 20 HOH HOH . O 4 HOH B 6 406 24 HOH HOH . O 4 HOH B 7 407 28 HOH HOH . O 4 HOH B 8 408 35 HOH HOH . O 4 HOH B 9 409 71 HOH HOH . O 4 HOH B 10 410 74 HOH HOH . O 4 HOH B 11 411 75 HOH HOH . O 4 HOH B 12 412 82 HOH HOH . O 4 HOH B 13 413 109 HOH HOH . O 4 HOH B 14 414 152 HOH HOH . O 4 HOH B 15 415 157 HOH HOH . O 4 HOH B 16 416 168 HOH HOH . O 4 HOH B 17 417 182 HOH HOH . O 4 HOH B 18 418 186 HOH HOH . O 4 HOH B 19 419 201 HOH HOH . O 4 HOH B 20 420 225 HOH HOH . P 4 HOH C 1 401 22 HOH HOH . P 4 HOH C 2 402 29 HOH HOH . P 4 HOH C 3 403 37 HOH HOH . P 4 HOH C 4 404 54 HOH HOH . P 4 HOH C 5 405 62 HOH HOH . P 4 HOH C 6 406 81 HOH HOH . P 4 HOH C 7 407 100 HOH HOH . P 4 HOH C 8 408 134 HOH HOH . P 4 HOH C 9 409 145 HOH HOH . P 4 HOH C 10 410 147 HOH HOH . P 4 HOH C 11 411 211 HOH HOH . P 4 HOH C 12 412 214 HOH HOH . # _atom_site.group_PDB HETATM _atom_site.id 1 _atom_site.type_symbol MN _atom_site.label_atom_id MN _atom_site.label_comp_id MN _atom_site.label_seq_id . _atom_site.label_alt_id . _atom_site.pdbx_PDB_ins_code . _atom_site.label_asym_id H _atom_site.label_entity_id 2 _atom_site.Cartn_x 0.409 _atom_site.Cartn_y 3.04 _atom_site.Cartn_z -7.791 _atom_site.occupancy 1 _atom_site.B_iso_or_equiv 15.87 _atom_site.pdbx_formal_charge ? _atom_site.auth_atom_id MN _atom_site.auth_comp_id MN _atom_site.auth_seq_id 301 _atom_site.auth_asym_id B _atom_site.pdbx_PDB_model_num 1 # _model_server_stats.io_time_ms 8 _model_server_stats.parse_time_ms 8 _model_server_stats.create_model_time_ms 6 _model_server_stats.query_time_ms 257 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 1 #