data_4QKC # _model_server_result.job_id bh4jtZJQSx86PEBBIVXMFg _model_server_result.datetime_utc '2025-01-11 06:19:27' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 4qkc # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"F","auth_seq_id":105}' # _entry.id 4QKC # _exptl.entry_id 4QKC _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 356.54 _entity.id 5 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description '(2S)-2,3-dihydroxypropyl (9Z)-octadec-9-enoate' _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 4QKC _cell.length_a 29.31 _cell.length_b 29.31 _cell.length_c 67.31 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 4QKC _symmetry.cell_setting ? _symmetry.Int_Tables_number 79 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'I 4' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details tetrameric _pdbx_struct_assembly.oligomeric_count 4 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2,3,4 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 2_645 -x+1,-y-1,z -1 0 0 0 -1 0 0 0 1 29.31 -29.31 0 3 'crystal symmetry operation' 3_545 -y,x-1,z 0 -1 0 1 0 0 0 0 1 0 -29.31 0 4 'crystal symmetry operation' 4_655 y+1,-x,z 0 1 0 -1 0 0 0 0 1 29.31 0 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 5 F N N ? 5 G N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order covale ? covale1 A C ACE 1 A ACE 21 1_555 A N SER 2 A SER 22 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.346 ? covale ? covale2 A C LEU 26 A LEU 46 1_555 A N NH2 27 A NH2 47 1_555 ? A ? ? A ? ? ? ? ? ? ? 1.327 ? covale ? covale3 A C LEU 26 A LEU 46 1_555 A N NH2 27 A NH2 47 1_555 ? B ? ? B ? ? ? ? ? ? ? 1.314 ? metalc ? metalc1 A O SER 2 A SER 22 1_555 B CA CA . A CA 101 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.387 ? metalc ? metalc2 A OD1 ASP 4 A ASP 24 1_555 D CA CA . A CA 103 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.4 ? metalc ? metalc3 B CA CA . A CA 101 1_555 H O HOH . A HOH 201 1_555 ? ? ? ? A ? ? ? ? ? ? ? 2.395 ? metalc ? metalc4 B CA CA . A CA 101 1_555 H O HOH . A HOH 242 1_555 ? ? ? ? B ? ? ? ? ? ? ? 2.225 ? metalc ? metalc5 D CA CA . A CA 103 1_555 F O23 OLB . A OLB 105 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.41 ? metalc ? metalc6 D CA CA . A CA 103 1_555 H O HOH . A HOH 211 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.492 ? metalc ? metalc7 D CA CA . A CA 103 1_555 H O HOH . A HOH 212 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.44 ? metalc ? metalc8 D CA CA . A CA 103 1_555 H O HOH . A HOH 220 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.383 ? # _chem_comp.formula 'C21 H40 O4' _chem_comp.formula_weight 356.54 _chem_comp.id OLB _chem_comp.mon_nstd_flag . _chem_comp.name '(2S)-2,3-dihydroxypropyl (9Z)-octadec-9-enoate' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 O19 OLB doub 145 n n C1 O20 OLB sing 146 n n C2 C1 OLB sing 147 n n C3 C2 OLB sing 148 n n C4 C3 OLB sing 149 n n C5 C4 OLB sing 150 n n C5 C6 OLB sing 151 n n O20 C21 OLB sing 152 n n C21 C22 OLB sing 153 n n C22 C24 OLB sing 154 n n O23 C22 OLB sing 155 n n C24 O25 OLB sing 156 n n C6 C7 OLB sing 157 n n C7 C8 OLB sing 158 n n C8 C9 OLB sing 159 n n C9 C10 OLB doub 160 z n C10 C11 OLB sing 161 n n C2 H2 OLB sing 162 n n C2 H2A OLB sing 163 n n C3 H3 OLB sing 164 n n C3 H3A OLB sing 165 n n C4 H4 OLB sing 166 n n C4 H4A OLB sing 167 n n C5 H5 OLB sing 168 n n C5 H5A OLB sing 169 n n C21 H21 OLB sing 170 n n C21 H21A OLB sing 171 n n C22 H22 OLB sing 172 n n O23 HO23 OLB sing 173 n n C24 H24 OLB sing 174 n n C24 H24A OLB sing 175 n n O25 HO25 OLB sing 176 n n C6 H16 OLB sing 177 n n C6 H17 OLB sing 178 n n C7 H18 OLB sing 179 n n C7 H19 OLB sing 180 n n C8 H20 OLB sing 181 n n C8 H211 OLB sing 182 n n C9 H221 OLB sing 183 n n C10 H23 OLB sing 184 n n C11 H241 OLB sing 185 n n C11 H25 OLB sing 186 n n C11 C12 OLB sing 187 n n C12 H26 OLB sing 188 n n C12 C13 OLB sing 189 n n C12 H27 OLB sing 190 n n C13 C14 OLB sing 191 n n C13 H28 OLB sing 192 n n C13 H29 OLB sing 193 n n C14 H30 OLB sing 194 n n C14 H31 OLB sing 195 n n C14 C15 OLB sing 196 n n C15 C16 OLB sing 197 n n C15 H32 OLB sing 198 n n C15 H33 OLB sing 199 n n C16 H34 OLB sing 200 n n C16 H35 OLB sing 201 n n C16 C17 OLB sing 202 n n C17 C18 OLB sing 203 n n C17 H36 OLB sing 204 n n C17 H37 OLB sing 205 n n C18 H38 OLB sing 206 n n C18 H39 OLB sing 207 n n C18 H40 OLB sing 208 n n # _atom_sites.entry_id 4QKC _atom_sites.fract_transf_matrix[1][1] 0.034118 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.034118 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.014857 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 CA A 1 101 1 CA CA . C 3 CL A 1 102 1 CL CL . D 2 CA A 1 103 1 CA CA . E 4 EDO A 1 104 1 EDO EDO . F 5 OLB A 1 105 1 OLB OLB . G 5 OLB A 1 106 1 OLB OLB . H 6 HOH A 1 201 1 HOH HOH . H 6 HOH A 2 202 2 HOH HOH . H 6 HOH A 3 203 3 HOH HOH . H 6 HOH A 4 204 4 HOH HOH . H 6 HOH A 5 205 5 HOH HOH . H 6 HOH A 6 206 6 HOH HOH . H 6 HOH A 7 207 7 HOH HOH . H 6 HOH A 8 208 8 HOH HOH . H 6 HOH A 9 209 9 HOH HOH . H 6 HOH A 10 210 10 HOH HOH . H 6 HOH A 11 211 11 HOH HOH . H 6 HOH A 12 212 12 HOH HOH . H 6 HOH A 13 213 13 HOH HOH . H 6 HOH A 14 214 14 HOH HOH . H 6 HOH A 15 215 15 HOH HOH . H 6 HOH A 16 216 16 HOH HOH . H 6 HOH A 17 217 17 HOH HOH . H 6 HOH A 18 218 18 HOH HOH . H 6 HOH A 19 219 19 HOH HOH . H 6 HOH A 20 220 20 HOH HOH . H 6 HOH A 21 221 21 HOH HOH . H 6 HOH A 22 222 22 HOH HOH . H 6 HOH A 23 223 23 HOH HOH . H 6 HOH A 24 224 24 HOH HOH . H 6 HOH A 25 225 25 HOH HOH . H 6 HOH A 26 226 26 HOH HOH . H 6 HOH A 27 227 27 HOH HOH . H 6 HOH A 28 228 28 HOH HOH . H 6 HOH A 29 229 29 HOH HOH . H 6 HOH A 30 230 30 HOH HOH . H 6 HOH A 31 231 31 HOH HOH . H 6 HOH A 32 232 32 HOH HOH . H 6 HOH A 33 233 33 HOH HOH . H 6 HOH A 34 234 34 HOH HOH . H 6 HOH A 35 235 35 HOH HOH . H 6 HOH A 36 236 36 HOH HOH . H 6 HOH A 37 237 37 HOH HOH . H 6 HOH A 38 238 38 HOH HOH . H 6 HOH A 39 239 39 HOH HOH . H 6 HOH A 40 240 40 HOH HOH . H 6 HOH A 41 241 41 HOH HOH . H 6 HOH A 42 242 42 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 OLB . . . F 5 1.785 -17.773 -12.55 0.68 52.02 ? C1 OLB 105 A 1 HETATM 2 C C2 OLB . . . F 5 1.566 -17.491 -11.061 0.68 42.49 ? C2 OLB 105 A 1 HETATM 3 C C3 OLB . . . F 5 1.769 -15.981 -10.787 0.68 38.51 ? C3 OLB 105 A 1 HETATM 4 C C4 OLB . . . F 5 1.103 -15.61 -9.48 0.68 64.61 ? C4 OLB 105 A 1 HETATM 5 C C5 OLB . . . F 5 1.866 -16.247 -8.31 0.68 41.5 ? C5 OLB 105 A 1 HETATM 6 O O19 OLB . . . F 5 0.925 -17.466 -13.361 0.68 95.58 ? O19 OLB 105 A 1 HETATM 7 O O20 OLB . . . F 5 2.937 -18.49 -12.976 0.68 76.46 ? O20 OLB 105 A 1 HETATM 8 C C21 OLB . . . F 5 2.979 -18.735 -14.4 0.68 37.1 ? C21 OLB 105 A 1 HETATM 9 C C22 OLB . . . F 5 4.429 -18.912 -14.845 0.68 46.21 ? C22 OLB 105 A 1 HETATM 10 O O23 OLB . . . F 5 4.992 -20.017 -14.178 0.68 23.88 ? O23 OLB 105 A 1 HETATM 11 C C24 OLB . . . F 5 4.468 -19.144 -16.313 0.68 18.26 ? C24 OLB 105 A 1 HETATM 12 O O25 OLB . . . F 5 5.781 -19.387 -16.719 0.68 60.08 ? O25 OLB 105 A 1 HETATM 13 C C6 OLB . . . F 5 1.185 -15.847 -6.975 0.68 29.84 ? C6 OLB 105 A 1 HETATM 14 C C7 OLB . . . F 5 1.952 -16.5 -5.777 0.68 28 ? C7 OLB 105 A 1 HETATM 15 C C8 OLB . . . F 5 0.995 -16.613 -4.549 0.68 36.17 ? C8 OLB 105 A 1 HETATM 16 C C9 OLB . . . F 5 1.812 -16.716 -3.278 0.68 37.22 ? C9 OLB 105 A 1 HETATM 17 C C10 OLB . . . F 5 1.174 -16.777 -2.042 0.68 51.98 ? C10 OLB 105 A 1 HETATM 18 C C11 OLB . . . F 5 2.005 -16.697 -0.74 0.68 39.7 ? C11 OLB 105 A 1 HETATM 19 H H2 OLB . . . F 5 0.645 -17.75 -10.81 0.68 50.99 ? H2 OLB 105 A 1 HETATM 20 H H2A OLB . . . F 5 2.205 -18.011 -10.533 0.68 50.99 ? H2A OLB 105 A 1 HETATM 21 H H3 OLB . . . F 5 2.729 -15.781 -10.733 0.68 46.21 ? H3 OLB 105 A 1 HETATM 22 H H3A OLB . . . F 5 1.37 -15.464 -11.513 0.68 46.21 ? H3A OLB 105 A 1 HETATM 23 H H4 OLB . . . F 5 0.18 -15.932 -9.481 0.68 77.53 ? H4 OLB 105 A 1 HETATM 24 H H4A OLB . . . F 5 1.107 -14.647 -9.379 0.68 77.53 ? H4A OLB 105 A 1 HETATM 25 H H5 OLB . . . F 5 1.853 -17.217 -8.403 0.68 49.8 ? H5 OLB 105 A 1 HETATM 26 H H5A OLB . . . F 5 2.79 -15.932 -8.313 0.68 49.8 ? H5A OLB 105 A 1 HETATM 27 H H21 OLB . . . F 5 2.465 -19.559 -14.609 0.68 44.52 ? H21 OLB 105 A 1 HETATM 28 H H21A OLB . . . F 5 2.581 -17.972 -14.875 0.68 44.52 ? H21A OLB 105 A 1 HETATM 29 H H22 OLB . . . F 5 4.936 -18.108 -14.628 0.68 55.45 ? H22 OLB 105 A 1 HETATM 30 H HO23 OLB . . . F 5 5.749 -20.266 -14.594 0.68 28.66 ? HO23 OLB 105 A 1 HETATM 31 H H24 OLB . . . F 5 3.91 -19.922 -16.533 0.68 21.91 ? H24 OLB 105 A 1 HETATM 32 H H24A OLB . . . F 5 4.123 -18.36 -16.774 0.68 21.91 ? H24A OLB 105 A 1 HETATM 33 H HO25 OLB . . . F 5 6.322 -18.844 -16.309 0.68 72.1 ? HO25 OLB 105 A 1 HETATM 34 H H16 OLB . . . F 5 1.2 -14.869 -6.882 0.68 35.81 ? H16 OLB 105 A 1 HETATM 35 H H17 OLB . . . F 5 0.259 -16.159 -6.977 0.68 35.81 ? H17 OLB 105 A 1 HETATM 36 H H18 OLB . . . F 5 2.264 -17.404 -6.037 0.68 33.6 ? H18 OLB 105 A 1 HETATM 37 H H19 OLB . . . F 5 2.729 -15.94 -5.538 0.68 33.6 ? H19 OLB 105 A 1 HETATM 38 H H20 OLB . . . F 5 0.424 -15.816 -4.505 0.68 43.4 ? H20 OLB 105 A 1 HETATM 39 H H211 OLB . . . F 5 0.435 -17.411 -4.642 0.68 43.4 ? H211 OLB 105 A 1 HETATM 40 H H221 OLB . . . F 5 2.779 -16.692 -3.322 0.68 44.66 ? H221 OLB 105 A 1 HETATM 41 C C12 OLB . . . F 5 1.862 -15.288 -0.114 0.68 79.82 ? C12 OLB 105 A 1 HETATM 42 H H23 OLB . . . F 5 0.187 -16.835 -1.997 0.68 62.38 ? H23 OLB 105 A 1 HETATM 43 H H241 OLB . . . F 5 1.684 -17.367 -0.107 0.68 47.64 ? H241 OLB 105 A 1 HETATM 44 C C13 OLB . . . F 5 2.838 -15.151 1.06 0.68 41.34 ? C13 OLB 105 A 1 HETATM 45 H H25 OLB . . . F 5 2.96 -16.87 -0.948 0.68 47.64 ? H25 OLB 105 A 1 HETATM 46 C C14 OLB . . . F 5 2.703 -13.754 1.678 0.68 36.37 ? C14 OLB 105 A 1 HETATM 47 H H26 OLB . . . F 5 0.936 -15.164 0.211 0.68 95.78 ? H26 OLB 105 A 1 HETATM 48 H H27 OLB . . . F 5 2.065 -14.612 -0.785 0.68 95.78 ? H27 OLB 105 A 1 HETATM 49 H H28 OLB . . . F 5 2.635 -15.817 1.725 0.68 49.61 ? H28 OLB 105 A 1 HETATM 50 C C15 OLB . . . F 5 1.427 -13.695 2.546 0.68 49.11 ? C15 OLB 105 A 1 HETATM 51 H H29 OLB . . . F 5 3.76 -15.28 0.737 0.68 49.61 ? H29 OLB 105 A 1 HETATM 52 C C16 OLB . . . F 5 1.444 -12.418 3.393 0.68 44.68 ? C16 OLB 105 A 1 HETATM 53 H H30 OLB . . . F 5 3.5 -13.563 2.245 0.68 43.64 ? H30 OLB 105 A 1 HETATM 54 H H31 OLB . . . F 5 2.643 -13.087 0.965 0.68 43.64 ? H31 OLB 105 A 1 HETATM 55 H H32 OLB . . . F 5 0.646 -13.69 1.972 0.68 58.93 ? H32 OLB 105 A 1 HETATM 56 C C17 OLB . . . F 5 0.273 -12.435 4.359 0.68 30.07 ? C17 OLB 105 A 1 HETATM 57 H H33 OLB . . . F 5 1.394 -14.486 3.141 0.68 58.93 ? H33 OLB 105 A 1 HETATM 58 C C18 OLB . . . F 5 0.393 -11.248 5.334 0.68 24.28 ? C18 OLB 105 A 1 HETATM 59 H H34 OLB . . . F 5 2.274 -12.374 3.894 0.68 53.62 ? H34 OLB 105 A 1 HETATM 60 H H35 OLB . . . F 5 1.373 -11.633 2.806 0.68 53.62 ? H35 OLB 105 A 1 HETATM 61 H H36 OLB . . . F 5 -0.575 -12.362 3.853 0.68 36.08 ? H36 OLB 105 A 1 HETATM 62 H H37 OLB . . . F 5 0.28 -13.273 4.864 0.68 36.08 ? H37 OLB 105 A 1 HETATM 63 H H38 OLB . . . F 5 -0.41 -11.205 5.899 0.68 29.14 ? H38 OLB 105 A 1 HETATM 64 H H39 OLB . . . F 5 0.48 -10.409 4.822 0.68 29.14 ? H39 OLB 105 A 1 HETATM 65 H H40 OLB . . . F 5 1.184 -11.369 5.899 0.68 29.14 ? H40 OLB 105 A 1 # _model_server_stats.io_time_ms 98 _model_server_stats.parse_time_ms 33 _model_server_stats.create_model_time_ms 23 _model_server_stats.query_time_ms 466 _model_server_stats.encode_time_ms 3 _model_server_stats.element_count 65 #