data_4QKC # _model_server_result.job_id eZVnOAnvSofw6JiGSoUNxg _model_server_result.datetime_utc '2025-01-11 06:08:25' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 4qkc # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"G","auth_seq_id":106}' # _entry.id 4QKC # _exptl.entry_id 4QKC _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 356.54 _entity.id 5 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description '(2S)-2,3-dihydroxypropyl (9Z)-octadec-9-enoate' _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 4QKC _cell.length_a 29.31 _cell.length_b 29.31 _cell.length_c 67.31 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 4QKC _symmetry.cell_setting ? _symmetry.Int_Tables_number 79 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'I 4' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details tetrameric _pdbx_struct_assembly.oligomeric_count 4 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2,3,4 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 2_645 -x+1,-y-1,z -1 0 0 0 -1 0 0 0 1 29.31 -29.31 0 3 'crystal symmetry operation' 3_545 -y,x-1,z 0 -1 0 1 0 0 0 0 1 0 -29.31 0 4 'crystal symmetry operation' 4_655 y+1,-x,z 0 1 0 -1 0 0 0 0 1 29.31 0 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 5 F N N ? 5 G N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order covale ? covale1 A C ACE 1 A ACE 21 1_555 A N SER 2 A SER 22 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.346 ? covale ? covale2 A C LEU 26 A LEU 46 1_555 A N NH2 27 A NH2 47 1_555 ? A ? ? A ? ? ? ? ? ? ? 1.327 ? covale ? covale3 A C LEU 26 A LEU 46 1_555 A N NH2 27 A NH2 47 1_555 ? B ? ? B ? ? ? ? ? ? ? 1.314 ? metalc ? metalc1 A O SER 2 A SER 22 1_555 B CA CA . A CA 101 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.387 ? metalc ? metalc2 A OD1 ASP 4 A ASP 24 1_555 D CA CA . A CA 103 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.4 ? metalc ? metalc3 B CA CA . A CA 101 1_555 H O HOH . A HOH 201 1_555 ? ? ? ? A ? ? ? ? ? ? ? 2.395 ? metalc ? metalc4 B CA CA . A CA 101 1_555 H O HOH . A HOH 242 1_555 ? ? ? ? B ? ? ? ? ? ? ? 2.225 ? metalc ? metalc5 D CA CA . A CA 103 1_555 F O23 OLB . A OLB 105 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.41 ? metalc ? metalc6 D CA CA . A CA 103 1_555 H O HOH . A HOH 211 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.492 ? metalc ? metalc7 D CA CA . A CA 103 1_555 H O HOH . A HOH 212 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.44 ? metalc ? metalc8 D CA CA . A CA 103 1_555 H O HOH . A HOH 220 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.383 ? # _chem_comp.formula 'C21 H40 O4' _chem_comp.formula_weight 356.54 _chem_comp.id OLB _chem_comp.mon_nstd_flag . _chem_comp.name '(2S)-2,3-dihydroxypropyl (9Z)-octadec-9-enoate' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 O19 OLB doub 145 n n C1 O20 OLB sing 146 n n C2 C1 OLB sing 147 n n C3 C2 OLB sing 148 n n C4 C3 OLB sing 149 n n C5 C4 OLB sing 150 n n C5 C6 OLB sing 151 n n O20 C21 OLB sing 152 n n C21 C22 OLB sing 153 n n C22 C24 OLB sing 154 n n O23 C22 OLB sing 155 n n C24 O25 OLB sing 156 n n C6 C7 OLB sing 157 n n C7 C8 OLB sing 158 n n C8 C9 OLB sing 159 n n C9 C10 OLB doub 160 z n C10 C11 OLB sing 161 n n C2 H2 OLB sing 162 n n C2 H2A OLB sing 163 n n C3 H3 OLB sing 164 n n C3 H3A OLB sing 165 n n C4 H4 OLB sing 166 n n C4 H4A OLB sing 167 n n C5 H5 OLB sing 168 n n C5 H5A OLB sing 169 n n C21 H21 OLB sing 170 n n C21 H21A OLB sing 171 n n C22 H22 OLB sing 172 n n O23 HO23 OLB sing 173 n n C24 H24 OLB sing 174 n n C24 H24A OLB sing 175 n n O25 HO25 OLB sing 176 n n C6 H16 OLB sing 177 n n C6 H17 OLB sing 178 n n C7 H18 OLB sing 179 n n C7 H19 OLB sing 180 n n C8 H20 OLB sing 181 n n C8 H211 OLB sing 182 n n C9 H221 OLB sing 183 n n C10 H23 OLB sing 184 n n C11 H241 OLB sing 185 n n C11 H25 OLB sing 186 n n C11 C12 OLB sing 187 n n C12 H26 OLB sing 188 n n C12 C13 OLB sing 189 n n C12 H27 OLB sing 190 n n C13 C14 OLB sing 191 n n C13 H28 OLB sing 192 n n C13 H29 OLB sing 193 n n C14 H30 OLB sing 194 n n C14 H31 OLB sing 195 n n C14 C15 OLB sing 196 n n C15 C16 OLB sing 197 n n C15 H32 OLB sing 198 n n C15 H33 OLB sing 199 n n C16 H34 OLB sing 200 n n C16 H35 OLB sing 201 n n C16 C17 OLB sing 202 n n C17 C18 OLB sing 203 n n C17 H36 OLB sing 204 n n C17 H37 OLB sing 205 n n C18 H38 OLB sing 206 n n C18 H39 OLB sing 207 n n C18 H40 OLB sing 208 n n # _atom_sites.entry_id 4QKC _atom_sites.fract_transf_matrix[1][1] 0.034118 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.034118 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.014857 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 CA A 1 101 1 CA CA . C 3 CL A 1 102 1 CL CL . D 2 CA A 1 103 1 CA CA . E 4 EDO A 1 104 1 EDO EDO . F 5 OLB A 1 105 1 OLB OLB . G 5 OLB A 1 106 1 OLB OLB . H 6 HOH A 1 201 1 HOH HOH . H 6 HOH A 2 202 2 HOH HOH . H 6 HOH A 3 203 3 HOH HOH . H 6 HOH A 4 204 4 HOH HOH . H 6 HOH A 5 205 5 HOH HOH . H 6 HOH A 6 206 6 HOH HOH . H 6 HOH A 7 207 7 HOH HOH . H 6 HOH A 8 208 8 HOH HOH . H 6 HOH A 9 209 9 HOH HOH . H 6 HOH A 10 210 10 HOH HOH . H 6 HOH A 11 211 11 HOH HOH . H 6 HOH A 12 212 12 HOH HOH . H 6 HOH A 13 213 13 HOH HOH . H 6 HOH A 14 214 14 HOH HOH . H 6 HOH A 15 215 15 HOH HOH . H 6 HOH A 16 216 16 HOH HOH . H 6 HOH A 17 217 17 HOH HOH . H 6 HOH A 18 218 18 HOH HOH . H 6 HOH A 19 219 19 HOH HOH . H 6 HOH A 20 220 20 HOH HOH . H 6 HOH A 21 221 21 HOH HOH . H 6 HOH A 22 222 22 HOH HOH . H 6 HOH A 23 223 23 HOH HOH . H 6 HOH A 24 224 24 HOH HOH . H 6 HOH A 25 225 25 HOH HOH . H 6 HOH A 26 226 26 HOH HOH . H 6 HOH A 27 227 27 HOH HOH . H 6 HOH A 28 228 28 HOH HOH . H 6 HOH A 29 229 29 HOH HOH . H 6 HOH A 30 230 30 HOH HOH . H 6 HOH A 31 231 31 HOH HOH . H 6 HOH A 32 232 32 HOH HOH . H 6 HOH A 33 233 33 HOH HOH . H 6 HOH A 34 234 34 HOH HOH . H 6 HOH A 35 235 35 HOH HOH . H 6 HOH A 36 236 36 HOH HOH . H 6 HOH A 37 237 37 HOH HOH . H 6 HOH A 38 238 38 HOH HOH . H 6 HOH A 39 239 39 HOH HOH . H 6 HOH A 40 240 40 HOH HOH . H 6 HOH A 41 241 41 HOH HOH . H 6 HOH A 42 242 42 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 OLB . . . G 5 3.034 -10.883 -11.811 0.72 42.46 ? C1 OLB 106 A 1 HETATM 2 C C2 OLB . . . G 5 3.134 -11.553 -10.437 0.72 41.14 ? C2 OLB 106 A 1 HETATM 3 C C3 OLB . . . G 5 2.515 -10.625 -9.365 0.72 48.97 ? C3 OLB 106 A 1 HETATM 4 C C4 OLB . . . G 5 2.888 -11.129 -7.988 0.72 50.16 ? C4 OLB 106 A 1 HETATM 5 C C5 OLB . . . G 5 2.21 -10.259 -6.92 0.72 48.18 ? C5 OLB 106 A 1 HETATM 6 O O19 OLB . . . G 5 3.849 -10.034 -12.136 0.72 164.55 ? O19 OLB 106 A 1 HETATM 7 O O20 OLB . . . G 5 1.941 -11.184 -12.67 0.72 89.72 ? O20 OLB 106 A 1 HETATM 8 C C21 OLB . . . G 5 2.327 -11.84 -13.898 0.72 90.41 ? C21 OLB 106 A 1 HETATM 9 C C22 OLB . . . G 5 3.295 -10.944 -14.671 0.72 130.57 ? C22 OLB 106 A 1 HETATM 10 O O23 OLB . . . G 5 4.622 -11.315 -14.369 0.72 27.19 ? O23 OLB 106 A 1 HETATM 11 C C24 OLB . . . G 5 3.054 -11.097 -16.142 0.72 73.19 ? C24 OLB 106 A 1 HETATM 12 O O25 OLB . . . G 5 2.627 -12.397 -16.424 0.72 34.78 ? O25 OLB 106 A 1 HETATM 13 C C6 OLB . . . G 5 2.349 -10.943 -5.535 0.72 40.95 ? C6 OLB 106 A 1 HETATM 14 C C7 OLB . . . G 5 2.097 -9.893 -4.403 0.72 35.98 ? C7 OLB 106 A 1 HETATM 15 C C8 OLB . . . G 5 1.89 -10.634 -3.044 0.72 50.64 ? C8 OLB 106 A 1 HETATM 16 C C9 OLB . . . G 5 2.174 -9.682 -1.901 0.72 81.98 ? C9 OLB 106 A 1 HETATM 17 C C10 OLB . . . G 5 1.408 -9.738 -0.739 0.72 89.15 ? C10 OLB 106 A 1 HETATM 18 C C11 OLB . . . G 5 1.127 -8.446 0.063 0.72 126.4 ? C11 OLB 106 A 1 HETATM 19 H H2 OLB . . . G 5 2.644 -12.412 -10.452 0.72 49.37 ? H2 OLB 106 A 1 HETATM 20 H H2A OLB . . . G 5 4.074 -11.718 -10.222 0.72 49.37 ? H2A OLB 106 A 1 HETATM 21 H H3 OLB . . . G 5 2.857 -9.713 -9.484 0.72 58.76 ? H3 OLB 106 A 1 HETATM 22 H H3A OLB . . . G 5 1.542 -10.623 -9.458 0.72 58.76 ? H3A OLB 106 A 1 HETATM 23 H H4 OLB . . . G 5 3.858 -11.084 -7.876 0.72 60.19 ? H4 OLB 106 A 1 HETATM 24 H H4A OLB . . . G 5 2.594 -12.046 -7.89 0.72 60.19 ? H4A OLB 106 A 1 HETATM 25 H H5 OLB . . . G 5 2.636 -9.384 -6.895 0.72 57.82 ? H5 OLB 106 A 1 HETATM 26 H H5A OLB . . . G 5 1.264 -10.154 -7.138 0.72 57.82 ? H5A OLB 106 A 1 HETATM 27 H H21 OLB . . . G 5 2.769 -12.704 -13.685 0.72 108.49 ? H21 OLB 106 A 1 HETATM 28 H H21A OLB . . . G 5 1.526 -12.007 -14.443 0.72 108.49 ? H21A OLB 106 A 1 HETATM 29 H H22 OLB . . . G 5 3.171 -10.019 -14.374 0.72 156.68 ? H22 OLB 106 A 1 HETATM 30 H HO23 OLB . . . G 5 4.783 -12.153 -14.649 0.72 32.63 ? HO23 OLB 106 A 1 HETATM 31 H H24 OLB . . . G 5 2.363 -10.475 -16.472 0.72 87.83 ? H24 OLB 106 A 1 HETATM 32 H H24A OLB . . . G 5 3.885 -10.926 -16.617 0.72 87.83 ? H24A OLB 106 A 1 HETATM 33 H HO25 OLB . . . G 5 3.072 -12.971 -15.949 0.72 41.74 ? HO25 OLB 106 A 1 HETATM 34 H H16 OLB . . . G 5 1.692 -11.669 -5.461 0.72 49.14 ? H16 OLB 106 A 1 HETATM 35 H H17 OLB . . . G 5 3.25 -11.31 -5.444 0.72 49.14 ? H17 OLB 106 A 1 HETATM 36 H H18 OLB . . . G 5 2.879 -9.288 -4.333 0.72 43.17 ? H18 OLB 106 A 1 HETATM 37 H H19 OLB . . . G 5 1.291 -9.366 -4.616 0.72 43.17 ? H19 OLB 106 A 1 HETATM 38 H H20 OLB . . . G 5 0.964 -10.952 -2.983 0.72 60.77 ? H20 OLB 106 A 1 HETATM 39 H H211 OLB . . . G 5 2.502 -11.398 -2.991 0.72 60.77 ? H211 OLB 106 A 1 HETATM 40 H H221 OLB . . . G 5 2.876 -9.02 -1.986 0.72 98.38 ? H221 OLB 106 A 1 HETATM 41 C C12 OLB . . . G 5 1.59 -8.629 1.529 0.72 56.5 ? C12 OLB 106 A 1 HETATM 42 H H23 OLB . . . G 5 1.068 -10.609 -0.413 0.72 106.98 ? H23 OLB 106 A 1 HETATM 43 H H241 OLB . . . G 5 1.613 -7.702 -0.34 0.72 151.68 ? H241 OLB 106 A 1 HETATM 44 C C13 OLB . . . G 5 2.962 -9.313 1.547 0.72 36.95 ? C13 OLB 106 A 1 HETATM 45 H H25 OLB . . . G 5 0.154 -8.252 0.046 0.72 151.68 ? H25 OLB 106 A 1 HETATM 46 C C14 OLB . . . G 5 3.501 -9.342 2.983 0.72 38.42 ? C14 OLB 106 A 1 HETATM 47 H H26 OLB . . . G 5 0.936 -9.189 2.014 0.72 67.8 ? H26 OLB 106 A 1 HETATM 48 H H27 OLB . . . G 5 1.656 -7.759 1.96 0.72 67.8 ? H27 OLB 106 A 1 HETATM 49 H H28 OLB . . . G 5 2.875 -10.215 1.219 0.72 44.34 ? H28 OLB 106 A 1 HETATM 50 C C15 OLB . . . G 5 4.644 -10.377 3.084 0.72 27 ? C15 OLB 106 A 1 HETATM 51 H H29 OLB . . . G 5 3.586 -8.813 0.972 0.72 44.34 ? H29 OLB 106 A 1 HETATM 52 C C16 OLB . . . G 5 5.238 -10.347 4.496 0.72 35.48 ? C16 OLB 106 A 1 HETATM 53 H H30 OLB . . . G 5 3.847 -8.44 3.226 0.72 46.1 ? H30 OLB 106 A 1 HETATM 54 H H31 OLB . . . G 5 2.781 -9.591 3.596 0.72 46.1 ? H31 OLB 106 A 1 HETATM 55 H H32 OLB . . . G 5 4.295 -11.262 2.898 0.72 32.4 ? H32 OLB 106 A 1 HETATM 56 C C17 OLB . . . G 5 4.28 -11.015 5.466 0.72 34.91 ? C17 OLB 106 A 1 HETATM 57 H H33 OLB . . . G 5 5.349 -10.156 2.425 0.72 32.4 ? H33 OLB 106 A 1 HETATM 58 C C18 OLB . . . G 5 4.998 -11.263 6.808 0.72 25.47 ? C18 OLB 106 A 1 HETATM 59 H H34 OLB . . . G 5 6.085 -10.823 4.5 0.72 42.58 ? H34 OLB 106 A 1 HETATM 60 H H35 OLB . . . G 5 5.385 -9.415 4.771 0.72 42.58 ? H35 OLB 106 A 1 HETATM 61 H H36 OLB . . . G 5 3.497 -10.429 5.615 0.72 41.89 ? H36 OLB 106 A 1 HETATM 62 H H37 OLB . . . G 5 3.982 -11.869 5.094 0.72 41.89 ? H37 OLB 106 A 1 HETATM 63 H H38 OLB . . . G 5 5.471 -10.446 7.082 0.72 30.56 ? H38 OLB 106 A 1 HETATM 64 H H39 OLB . . . G 5 5.647 -11.999 6.703 0.72 30.56 ? H39 OLB 106 A 1 HETATM 65 H H40 OLB . . . G 5 4.338 -11.503 7.491 0.72 30.56 ? H40 OLB 106 A 1 # _model_server_stats.io_time_ms 7 _model_server_stats.parse_time_ms 9 _model_server_stats.create_model_time_ms 2 _model_server_stats.query_time_ms 341 _model_server_stats.encode_time_ms 4 _model_server_stats.element_count 65 #