data_4QKF
#
_model_server_result.job_id            ukl8RYL9rPSrvtnsnsR1IA 
_model_server_result.datetime_utc      '2024-11-23 17:51:58' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          4qkf 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"D","auth_seq_id":300}' 
#
_entry.id    4QKF 
#
_exptl.entry_id    4QKF 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              54.938 
_entity.id                          2 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            'MANGANESE (II) ION' 
_entity.pdbx_number_of_molecules    4 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          119.94 
_cell.angle_gamma         90 
_cell.entry_id            4QKF 
_cell.length_a            66.364 
_cell.length_b            81.958 
_cell.length_c            66.082 
_cell.Z_PDB               6 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 4QKF 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        4 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 1 21 1' 
#
loop_
_pdbx_struct_assembly.method_details
_pdbx_struct_assembly.oligomeric_details
_pdbx_struct_assembly.oligomeric_count
_pdbx_struct_assembly.details
_pdbx_struct_assembly.id
PISA monomeric 1 author_and_software_defined_assembly 1 
PISA monomeric 1 author_and_software_defined_assembly 2 
PISA monomeric 1 author_and_software_defined_assembly 3 
#
loop_
_pdbx_struct_assembly_gen.asym_id_list
_pdbx_struct_assembly_gen.assembly_id
_pdbx_struct_assembly_gen.oper_expression
A,D,E,J 1 1 
B,F,K 2 1 
C,G,H,I,L 3 1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 2 D N N 
? 2 F N N 
? 2 G N N 
? 2 I N N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
metalc ? metalc1 A NE2 HIS 106 A HIS 121 1_555 D MN MN . A MN 300 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.367 ? 
metalc ? metalc2 A OD1 ASP 108 A ASP 123 1_555 D MN MN . A MN 300 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.3 ? 
metalc ? metalc3 A NE2 HIS 162 A HIS 177 1_555 D MN MN . A MN 300 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.379 ? 
metalc ? metalc4 D MN MN . A MN 300 1_555 E O2' OGA . A OGA 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.389 ? 
metalc ? metalc5 D MN MN . A MN 300 1_555 E O2 OGA . A OGA 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.743 ? 
metalc ? metalc6 B NE2 HIS 106 B HIS 121 1_555 F MN MN . B MN 300 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.009 ? 
metalc ? metalc7 B OD1 ASP 108 B ASP 123 1_555 F MN MN . B MN 300 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.325 ? 
metalc ? metalc8 B NE2 HIS 162 B HIS 177 1_555 F MN MN . B MN 300 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.252 ? 
metalc ? metalc9 F MN MN . B MN 300 1_555 K O HOH . B HOH 426 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.597 ? 
metalc ? metalc10 C NE2 HIS 106 C HIS 121 1_555 G MN MN . C MN 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.425 ? 
metalc ? metalc11 C OD1 ASP 108 C ASP 123 1_555 G MN MN . C MN 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.037 ? 
metalc ? metalc12 C NE2 HIS 162 C HIS 177 1_555 G MN MN . C MN 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.443 ? 
metalc ? metalc13 C OE1 GLU 174 C GLU 189 1_555 I MN MN . C MN 303 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.468 ? 
metalc ? metalc14 G MN MN . C MN 301 1_555 H O2 OGA . C OGA 302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.26 ? 
metalc ? metalc15 G MN MN . C MN 301 1_555 H O2' OGA . C OGA 302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.363 ? 
#
_chem_comp.formula           'Mn 2' 
_chem_comp.formula_weight    54.938 
_chem_comp.id                MN 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              'MANGANESE (II) ION' 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
_atom_sites.entry_id                     4QKF 
_atom_sites.fract_transf_matrix[1][1]    0.015068 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0.008677 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.012201 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.017462 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
D 2 MN A 1 300 300 MN MN . 
E 3 OGA A 1 301 301 OGA OGA . 
F 2 MN B 1 300 300 MN MN . 
G 2 MN C 1 301 300 MN MN . 
H 3 OGA C 1 302 301 OGA OGA . 
I 2 MN C 1 303 1 MN MN . 
J 4 HOH A 1 401 4 HOH HOH . 
J 4 HOH A 2 402 6 HOH HOH . 
J 4 HOH A 3 403 7 HOH HOH . 
J 4 HOH A 4 404 8 HOH HOH . 
J 4 HOH A 5 405 15 HOH HOH . 
J 4 HOH A 6 406 16 HOH HOH . 
J 4 HOH A 7 407 18 HOH HOH . 
J 4 HOH A 8 408 20 HOH HOH . 
J 4 HOH A 9 409 21 HOH HOH . 
J 4 HOH A 10 410 23 HOH HOH . 
J 4 HOH A 11 411 25 HOH HOH . 
J 4 HOH A 12 412 26 HOH HOH . 
J 4 HOH A 13 413 27 HOH HOH . 
J 4 HOH A 14 414 28 HOH HOH . 
J 4 HOH A 15 415 29 HOH HOH . 
J 4 HOH A 16 416 34 HOH HOH . 
J 4 HOH A 17 417 35 HOH HOH . 
J 4 HOH A 18 418 38 HOH HOH . 
J 4 HOH A 19 419 39 HOH HOH . 
J 4 HOH A 20 420 41 HOH HOH . 
J 4 HOH A 21 421 43 HOH HOH . 
J 4 HOH A 22 422 44 HOH HOH . 
J 4 HOH A 23 423 48 HOH HOH . 
J 4 HOH A 24 424 49 HOH HOH . 
J 4 HOH A 25 425 51 HOH HOH . 
J 4 HOH A 26 426 54 HOH HOH . 
J 4 HOH A 27 427 57 HOH HOH . 
J 4 HOH A 28 428 63 HOH HOH . 
J 4 HOH A 29 429 69 HOH HOH . 
J 4 HOH A 30 430 71 HOH HOH . 
J 4 HOH A 31 431 78 HOH HOH . 
J 4 HOH A 32 432 79 HOH HOH . 
J 4 HOH A 33 433 87 HOH HOH . 
J 4 HOH A 34 434 89 HOH HOH . 
J 4 HOH A 35 435 90 HOH HOH . 
J 4 HOH A 36 436 91 HOH HOH . 
J 4 HOH A 37 437 97 HOH HOH . 
J 4 HOH A 38 438 99 HOH HOH . 
J 4 HOH A 39 439 109 HOH HOH . 
J 4 HOH A 40 440 111 HOH HOH . 
J 4 HOH A 41 441 125 HOH HOH . 
J 4 HOH A 42 442 126 HOH HOH . 
J 4 HOH A 43 443 127 HOH HOH . 
J 4 HOH A 44 444 131 HOH HOH . 
J 4 HOH A 45 445 133 HOH HOH . 
J 4 HOH A 46 446 142 HOH HOH . 
J 4 HOH A 47 447 147 HOH HOH . 
J 4 HOH A 48 448 152 HOH HOH . 
J 4 HOH A 49 449 157 HOH HOH . 
J 4 HOH A 50 450 159 HOH HOH . 
J 4 HOH A 51 451 149 HOH HOH . 
K 4 HOH B 1 401 9 HOH HOH . 
K 4 HOH B 2 402 10 HOH HOH . 
K 4 HOH B 3 403 14 HOH HOH . 
K 4 HOH B 4 404 17 HOH HOH . 
K 4 HOH B 5 405 40 HOH HOH . 
K 4 HOH B 6 406 42 HOH HOH . 
K 4 HOH B 7 407 45 HOH HOH . 
K 4 HOH B 8 408 50 HOH HOH . 
K 4 HOH B 9 409 52 HOH HOH . 
K 4 HOH B 10 410 53 HOH HOH . 
K 4 HOH B 11 411 58 HOH HOH . 
K 4 HOH B 12 412 61 HOH HOH . 
K 4 HOH B 13 413 62 HOH HOH . 
K 4 HOH B 14 414 64 HOH HOH . 
K 4 HOH B 15 415 66 HOH HOH . 
K 4 HOH B 16 416 67 HOH HOH . 
K 4 HOH B 17 417 73 HOH HOH . 
K 4 HOH B 18 418 74 HOH HOH . 
K 4 HOH B 19 419 80 HOH HOH . 
K 4 HOH B 20 420 81 HOH HOH . 
K 4 HOH B 21 421 83 HOH HOH . 
K 4 HOH B 22 422 86 HOH HOH . 
K 4 HOH B 23 423 88 HOH HOH . 
K 4 HOH B 24 424 92 HOH HOH . 
K 4 HOH B 25 425 94 HOH HOH . 
K 4 HOH B 26 426 95 HOH HOH . 
K 4 HOH B 27 427 98 HOH HOH . 
K 4 HOH B 28 428 102 HOH HOH . 
K 4 HOH B 29 429 104 HOH HOH . 
K 4 HOH B 30 430 106 HOH HOH . 
K 4 HOH B 31 431 108 HOH HOH . 
K 4 HOH B 32 432 110 HOH HOH . 
K 4 HOH B 33 433 112 HOH HOH . 
K 4 HOH B 34 434 119 HOH HOH . 
K 4 HOH B 35 435 120 HOH HOH . 
K 4 HOH B 36 436 123 HOH HOH . 
K 4 HOH B 37 437 132 HOH HOH . 
K 4 HOH B 38 438 135 HOH HOH . 
K 4 HOH B 39 439 136 HOH HOH . 
K 4 HOH B 40 440 140 HOH HOH . 
K 4 HOH B 41 441 141 HOH HOH . 
K 4 HOH B 42 442 144 HOH HOH . 
K 4 HOH B 43 443 148 HOH HOH . 
K 4 HOH B 44 444 150 HOH HOH . 
K 4 HOH B 45 445 151 HOH HOH . 
K 4 HOH B 46 446 154 HOH HOH . 
K 4 HOH B 47 447 155 HOH HOH . 
K 4 HOH B 48 448 156 HOH HOH . 
K 4 HOH B 49 449 158 HOH HOH . 
L 4 HOH C 1 401 1 HOH HOH . 
L 4 HOH C 2 402 2 HOH HOH . 
L 4 HOH C 3 403 3 HOH HOH . 
L 4 HOH C 4 404 5 HOH HOH . 
L 4 HOH C 5 405 11 HOH HOH . 
L 4 HOH C 6 406 12 HOH HOH . 
L 4 HOH C 7 407 13 HOH HOH . 
L 4 HOH C 8 408 19 HOH HOH . 
L 4 HOH C 9 409 22 HOH HOH . 
L 4 HOH C 10 410 24 HOH HOH . 
L 4 HOH C 11 411 30 HOH HOH . 
L 4 HOH C 12 412 31 HOH HOH . 
L 4 HOH C 13 413 32 HOH HOH . 
L 4 HOH C 14 414 33 HOH HOH . 
L 4 HOH C 15 415 36 HOH HOH . 
L 4 HOH C 16 416 37 HOH HOH . 
L 4 HOH C 17 417 46 HOH HOH . 
L 4 HOH C 18 418 47 HOH HOH . 
L 4 HOH C 19 419 55 HOH HOH . 
L 4 HOH C 20 420 56 HOH HOH . 
L 4 HOH C 21 421 59 HOH HOH . 
L 4 HOH C 22 422 60 HOH HOH . 
L 4 HOH C 23 423 65 HOH HOH . 
L 4 HOH C 24 424 68 HOH HOH . 
L 4 HOH C 25 425 70 HOH HOH . 
L 4 HOH C 26 426 72 HOH HOH . 
L 4 HOH C 27 427 75 HOH HOH . 
L 4 HOH C 28 428 76 HOH HOH . 
L 4 HOH C 29 429 77 HOH HOH . 
L 4 HOH C 30 430 82 HOH HOH . 
L 4 HOH C 31 431 84 HOH HOH . 
L 4 HOH C 32 432 85 HOH HOH . 
L 4 HOH C 33 433 93 HOH HOH . 
L 4 HOH C 34 434 96 HOH HOH . 
L 4 HOH C 35 435 100 HOH HOH . 
L 4 HOH C 36 436 101 HOH HOH . 
L 4 HOH C 37 437 103 HOH HOH . 
L 4 HOH C 38 438 105 HOH HOH . 
L 4 HOH C 39 439 107 HOH HOH . 
L 4 HOH C 40 440 113 HOH HOH . 
L 4 HOH C 41 441 114 HOH HOH . 
L 4 HOH C 42 442 115 HOH HOH . 
L 4 HOH C 43 443 116 HOH HOH . 
L 4 HOH C 44 444 117 HOH HOH . 
L 4 HOH C 45 445 118 HOH HOH . 
L 4 HOH C 46 446 121 HOH HOH . 
L 4 HOH C 47 447 122 HOH HOH . 
L 4 HOH C 48 448 124 HOH HOH . 
L 4 HOH C 49 449 128 HOH HOH . 
L 4 HOH C 50 450 129 HOH HOH . 
L 4 HOH C 51 451 130 HOH HOH . 
L 4 HOH C 52 452 134 HOH HOH . 
L 4 HOH C 53 453 137 HOH HOH . 
L 4 HOH C 54 454 138 HOH HOH . 
L 4 HOH C 55 455 139 HOH HOH . 
L 4 HOH C 56 456 143 HOH HOH . 
L 4 HOH C 57 457 145 HOH HOH . 
L 4 HOH C 58 458 146 HOH HOH . 
L 4 HOH C 59 459 153 HOH HOH . 
#
_atom_site.group_PDB             HETATM 
_atom_site.id                    1 
_atom_site.type_symbol           MN 
_atom_site.label_atom_id         MN 
_atom_site.label_comp_id         MN 
_atom_site.label_seq_id          . 
_atom_site.label_alt_id          . 
_atom_site.pdbx_PDB_ins_code     . 
_atom_site.label_asym_id         D 
_atom_site.label_entity_id       2 
_atom_site.Cartn_x               -32.362 
_atom_site.Cartn_y               -1.047 
_atom_site.Cartn_z               64.136 
_atom_site.occupancy             1 
_atom_site.B_iso_or_equiv        21.29 
_atom_site.pdbx_formal_charge    ? 
_atom_site.auth_atom_id          MN 
_atom_site.auth_comp_id          MN 
_atom_site.auth_seq_id           300 
_atom_site.auth_asym_id          A 
_atom_site.pdbx_PDB_model_num    1 
#
_model_server_stats.io_time_ms              62 
_model_server_stats.parse_time_ms           13 
_model_server_stats.create_model_time_ms    10 
_model_server_stats.query_time_ms           778 
_model_server_stats.encode_time_ms          6 
_model_server_stats.element_count           1 
#