data_4QKI # _model_server_result.job_id 8392nZwy4fc4oa97V-KZyQ _model_server_result.datetime_utc '2025-08-31 19:35:12' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 4qki # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"F","auth_seq_id":302}' # _entry.id 4QKI # _exptl.entry_id 4QKI _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 221.208 _entity.id 2 _entity.src_method man _entity.type non-polymer _entity.pdbx_description 2-acetamido-2-deoxy-beta-D-glucopyranose _entity.pdbx_number_of_molecules 4 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 4QKI _cell.length_a 51.26 _cell.length_b 54.12 _cell.length_c 74.22 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 4QKI _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 21 21 21' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id ? dimeric 2 author_defined_assembly 1 PISA monomeric 1 software_defined_assembly 2 PISA monomeric 1 software_defined_assembly 3 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,B,C,D,E,F,G,H 1 1 A,C,D,G 2 1 B,E,F,H 3 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 C N N ? 2 D N N ? 2 E N N ? 2 F N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 7 A CYS 75 1_555 A SG CYS 18 A CYS 86 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.078 ? disulf ? disulf2 A SG CYS 35 A CYS 103 1_555 A SG CYS 116 A CYS 184 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.069 ? disulf ? disulf3 A SG CYS 95 A CYS 163 1_555 A SG CYS 108 A CYS 176 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.944 ? disulf ? disulf4 B SG CYS 7 B CYS 75 1_555 B SG CYS 18 B CYS 86 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.08 ? disulf ? disulf5 B SG CYS 35 B CYS 103 1_555 B SG CYS 116 B CYS 184 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.045 ? disulf ? disulf6 B SG CYS 95 B CYS 163 1_555 B SG CYS 108 B CYS 176 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.084 ? covale ? covale1 A ND2 ASN 27 A ASN 95 1_555 C C1 NAG . A NAG 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.427 ? covale ? covale2 A ND2 ASN 79 A ASN 147 1_555 D C1 NAG . A NAG 302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.406 ? covale ? covale3 B ND2 ASN 27 B ASN 95 1_555 E C1 NAG . B NAG 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.465 ? covale ? covale4 B ND2 ASN 79 B ASN 147 1_555 F C1 NAG . B NAG 302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.436 ? # _chem_comp.formula 'C8 H15 N O6' _chem_comp.formula_weight 221.208 _chem_comp.id NAG _chem_comp.mon_nstd_flag . _chem_comp.name 2-acetamido-2-deoxy-beta-D-glucopyranose _chem_comp.type 'd-saccharide, beta linking' _chem_comp.pdbx_synonyms N-acetyl-beta-D-glucosamine;2-acetamido-2-deoxy-beta-D-glucose;2-acetamido-2-deoxy-D-glucose;2-acetamido-2-deoxy-glucose;N-ACETYL-D-GLUCOSAMINE # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 C2 NAG sing 218 n n C1 O1 NAG sing 219 n n C1 O5 NAG sing 220 n n C1 H1 NAG sing 221 n n C2 C3 NAG sing 222 n n C2 N2 NAG sing 223 n n C2 H2 NAG sing 224 n n C3 C4 NAG sing 225 n n C3 O3 NAG sing 226 n n C3 H3 NAG sing 227 n n C4 C5 NAG sing 228 n n C4 O4 NAG sing 229 n n C4 H4 NAG sing 230 n n C5 C6 NAG sing 231 n n C5 O5 NAG sing 232 n n C5 H5 NAG sing 233 n n C6 O6 NAG sing 234 n n C6 H61 NAG sing 235 n n C6 H62 NAG sing 236 n n C7 C8 NAG sing 237 n n C7 N2 NAG sing 238 n n C7 O7 NAG doub 239 n n C8 H81 NAG sing 240 n n C8 H82 NAG sing 241 n n C8 H83 NAG sing 242 n n N2 HN2 NAG sing 243 n n O1 HO1 NAG sing 244 n n O3 HO3 NAG sing 245 n n O4 HO4 NAG sing 246 n n O6 HO6 NAG sing 247 n n # loop_ _pdbx_chem_comp_identifier.comp_id _pdbx_chem_comp_identifier.identifier _pdbx_chem_comp_identifier.type _pdbx_chem_comp_identifier.program _pdbx_chem_comp_identifier.program_version NAG DGlcpNAcb 'CONDENSED IUPAC CARBOHYDRATE SYMBOL' GMML 1 NAG N-acetyl-b-D-glucopyranosamine 'COMMON NAME' GMML 1 NAG b-D-GlcpNAc 'IUPAC CARBOHYDRATE SYMBOL' PDB-CARE 1 NAG GlcNAc 'SNFG CARBOHYDRATE SYMBOL' GMML 1 # _atom_sites.entry_id 4QKI _atom_sites.fract_transf_matrix[1][1] 0.019508 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.018477 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.013474 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 NAG A 1 301 511 NAG NAG . D 2 NAG A 1 302 512 NAG NAG . E 2 NAG B 1 301 511 NAG NAG . F 2 NAG B 1 302 512 NAG NAG . G 3 HOH A 1 401 5 HOH HOH . G 3 HOH A 2 402 7 HOH HOH . G 3 HOH A 3 403 8 HOH HOH . G 3 HOH A 4 404 10 HOH HOH . G 3 HOH A 5 405 11 HOH HOH . G 3 HOH A 6 406 12 HOH HOH . G 3 HOH A 7 407 14 HOH HOH . G 3 HOH A 8 408 19 HOH HOH . G 3 HOH A 9 409 20 HOH HOH . G 3 HOH A 10 410 21 HOH HOH . G 3 HOH A 11 411 22 HOH HOH . G 3 HOH A 12 412 25 HOH HOH . G 3 HOH A 13 413 28 HOH HOH . G 3 HOH A 14 414 30 HOH HOH . G 3 HOH A 15 415 31 HOH HOH . G 3 HOH A 16 416 33 HOH HOH . G 3 HOH A 17 417 35 HOH HOH . G 3 HOH A 18 418 39 HOH HOH . G 3 HOH A 19 419 41 HOH HOH . G 3 HOH A 20 420 44 HOH HOH . G 3 HOH A 21 421 49 HOH HOH . G 3 HOH A 22 422 52 HOH HOH . G 3 HOH A 23 423 54 HOH HOH . G 3 HOH A 24 424 55 HOH HOH . G 3 HOH A 25 425 58 HOH HOH . G 3 HOH A 26 426 61 HOH HOH . G 3 HOH A 27 427 63 HOH HOH . G 3 HOH A 28 428 66 HOH HOH . G 3 HOH A 29 429 67 HOH HOH . G 3 HOH A 30 430 68 HOH HOH . G 3 HOH A 31 431 69 HOH HOH . G 3 HOH A 32 432 70 HOH HOH . G 3 HOH A 33 433 75 HOH HOH . G 3 HOH A 34 434 77 HOH HOH . G 3 HOH A 35 435 78 HOH HOH . G 3 HOH A 36 436 79 HOH HOH . G 3 HOH A 37 437 80 HOH HOH . G 3 HOH A 38 438 84 HOH HOH . G 3 HOH A 39 439 86 HOH HOH . G 3 HOH A 40 440 89 HOH HOH . G 3 HOH A 41 441 90 HOH HOH . G 3 HOH A 42 442 91 HOH HOH . G 3 HOH A 43 443 92 HOH HOH . G 3 HOH A 44 444 93 HOH HOH . G 3 HOH A 45 445 94 HOH HOH . G 3 HOH A 46 446 95 HOH HOH . G 3 HOH A 47 447 96 HOH HOH . G 3 HOH A 48 448 97 HOH HOH . G 3 HOH A 49 449 108 HOH HOH . G 3 HOH A 50 450 109 HOH HOH . G 3 HOH A 51 451 110 HOH HOH . G 3 HOH A 52 452 111 HOH HOH . G 3 HOH A 53 453 117 HOH HOH . G 3 HOH A 54 454 119 HOH HOH . G 3 HOH A 55 455 120 HOH HOH . G 3 HOH A 56 456 124 HOH HOH . G 3 HOH A 57 457 125 HOH HOH . G 3 HOH A 58 458 126 HOH HOH . G 3 HOH A 59 459 127 HOH HOH . G 3 HOH A 60 460 128 HOH HOH . G 3 HOH A 61 461 129 HOH HOH . G 3 HOH A 62 462 130 HOH HOH . G 3 HOH A 63 463 131 HOH HOH . G 3 HOH A 64 464 132 HOH HOH . G 3 HOH A 65 465 138 HOH HOH . G 3 HOH A 66 466 139 HOH HOH . G 3 HOH A 67 467 140 HOH HOH . G 3 HOH A 68 468 142 HOH HOH . G 3 HOH A 69 469 144 HOH HOH . G 3 HOH A 70 470 145 HOH HOH . G 3 HOH A 71 471 146 HOH HOH . G 3 HOH A 72 472 147 HOH HOH . G 3 HOH A 73 473 153 HOH HOH . G 3 HOH A 74 474 155 HOH HOH . G 3 HOH A 75 475 156 HOH HOH . G 3 HOH A 76 476 159 HOH HOH . G 3 HOH A 77 477 160 HOH HOH . G 3 HOH A 78 478 161 HOH HOH . G 3 HOH A 79 479 162 HOH HOH . G 3 HOH A 80 480 163 HOH HOH . G 3 HOH A 81 481 166 HOH HOH . G 3 HOH A 82 482 167 HOH HOH . H 3 HOH B 1 401 1 HOH HOH . H 3 HOH B 2 402 2 HOH HOH . H 3 HOH B 3 403 3 HOH HOH . H 3 HOH B 4 404 4 HOH HOH . H 3 HOH B 5 405 6 HOH HOH . H 3 HOH B 6 406 9 HOH HOH . H 3 HOH B 7 407 13 HOH HOH . H 3 HOH B 8 408 15 HOH HOH . H 3 HOH B 9 409 16 HOH HOH . H 3 HOH B 10 410 17 HOH HOH . H 3 HOH B 11 411 18 HOH HOH . H 3 HOH B 12 412 23 HOH HOH . H 3 HOH B 13 413 24 HOH HOH . H 3 HOH B 14 414 26 HOH HOH . H 3 HOH B 15 415 27 HOH HOH . H 3 HOH B 16 416 29 HOH HOH . H 3 HOH B 17 417 32 HOH HOH . H 3 HOH B 18 418 34 HOH HOH . H 3 HOH B 19 419 36 HOH HOH . H 3 HOH B 20 420 37 HOH HOH . H 3 HOH B 21 421 38 HOH HOH . H 3 HOH B 22 422 40 HOH HOH . H 3 HOH B 23 423 42 HOH HOH . H 3 HOH B 24 424 43 HOH HOH . H 3 HOH B 25 425 45 HOH HOH . H 3 HOH B 26 426 46 HOH HOH . H 3 HOH B 27 427 47 HOH HOH . H 3 HOH B 28 428 48 HOH HOH . H 3 HOH B 29 429 50 HOH HOH . H 3 HOH B 30 430 51 HOH HOH . H 3 HOH B 31 431 53 HOH HOH . H 3 HOH B 32 432 56 HOH HOH . H 3 HOH B 33 433 57 HOH HOH . H 3 HOH B 34 434 59 HOH HOH . H 3 HOH B 35 435 60 HOH HOH . H 3 HOH B 36 436 62 HOH HOH . H 3 HOH B 37 437 64 HOH HOH . H 3 HOH B 38 438 65 HOH HOH . H 3 HOH B 39 439 71 HOH HOH . H 3 HOH B 40 440 72 HOH HOH . H 3 HOH B 41 441 73 HOH HOH . H 3 HOH B 42 442 74 HOH HOH . H 3 HOH B 43 443 76 HOH HOH . H 3 HOH B 44 444 81 HOH HOH . H 3 HOH B 45 445 82 HOH HOH . H 3 HOH B 46 446 83 HOH HOH . H 3 HOH B 47 447 85 HOH HOH . H 3 HOH B 48 448 87 HOH HOH . H 3 HOH B 49 449 88 HOH HOH . H 3 HOH B 50 450 98 HOH HOH . H 3 HOH B 51 451 99 HOH HOH . H 3 HOH B 52 452 100 HOH HOH . H 3 HOH B 53 453 101 HOH HOH . H 3 HOH B 54 454 102 HOH HOH . H 3 HOH B 55 455 103 HOH HOH . H 3 HOH B 56 456 104 HOH HOH . H 3 HOH B 57 457 105 HOH HOH . H 3 HOH B 58 458 106 HOH HOH . H 3 HOH B 59 459 107 HOH HOH . H 3 HOH B 60 460 112 HOH HOH . H 3 HOH B 61 461 113 HOH HOH . H 3 HOH B 62 462 114 HOH HOH . H 3 HOH B 63 463 115 HOH HOH . H 3 HOH B 64 464 116 HOH HOH . H 3 HOH B 65 465 118 HOH HOH . H 3 HOH B 66 466 121 HOH HOH . H 3 HOH B 67 467 122 HOH HOH . H 3 HOH B 68 468 123 HOH HOH . H 3 HOH B 69 469 133 HOH HOH . H 3 HOH B 70 470 134 HOH HOH . H 3 HOH B 71 471 135 HOH HOH . H 3 HOH B 72 472 136 HOH HOH . H 3 HOH B 73 473 137 HOH HOH . H 3 HOH B 74 474 141 HOH HOH . H 3 HOH B 75 475 143 HOH HOH . H 3 HOH B 76 476 148 HOH HOH . H 3 HOH B 77 477 149 HOH HOH . H 3 HOH B 78 478 150 HOH HOH . H 3 HOH B 79 479 151 HOH HOH . H 3 HOH B 80 480 152 HOH HOH . H 3 HOH B 81 481 154 HOH HOH . H 3 HOH B 82 482 157 HOH HOH . H 3 HOH B 83 483 158 HOH HOH . H 3 HOH B 84 484 164 HOH HOH . H 3 HOH B 85 485 165 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 NAG . . . F 2 -18.096 -10.116 32.969 1 25.59 ? C1 NAG 302 B 1 HETATM 2 C C2 NAG . . . F 2 -17.213 -9.176 33.817 1 28.97 ? C2 NAG 302 B 1 HETATM 3 C C3 NAG . . . F 2 -16.97 -7.858 33.11 1 29.39 ? C3 NAG 302 B 1 HETATM 4 C C4 NAG . . . F 2 -16.299 -8.159 31.792 1 28.43 ? C4 NAG 302 B 1 HETATM 5 C C5 NAG . . . F 2 -17.137 -9.216 31.018 1 27.55 ? C5 NAG 302 B 1 HETATM 6 C C6 NAG . . . F 2 -16.555 -9.632 29.693 1 25.76 ? C6 NAG 302 B 1 HETATM 7 C C7 NAG . . . F 2 -17.106 -9.572 36.164 1 34.96 ? C7 NAG 302 B 1 HETATM 8 C C8 NAG . . . F 2 -17.541 -9.311 37.577 1 37.03 ? C8 NAG 302 B 1 HETATM 9 N N2 NAG . . . F 2 -17.682 -8.91 35.162 1 31.51 ? N2 NAG 302 B 1 HETATM 10 O O3 NAG . . . F 2 -16.145 -6.99 33.862 1 27.67 ? O3 NAG 302 B 1 HETATM 11 O O4 NAG . . . F 2 -16.275 -6.925 31.127 1 31.07 ? O4 NAG 302 B 1 HETATM 12 O O5 NAG . . . F 2 -17.314 -10.375 31.804 1 26.43 ? O5 NAG 302 B 1 HETATM 13 O O6 NAG . . . F 2 -15.197 -9.965 29.821 1 27.35 ? O6 NAG 302 B 1 HETATM 14 O O7 NAG . . . F 2 -16.271 -10.426 35.911 1 37.49 ? O7 NAG 302 B 1 # _model_server_stats.io_time_ms 5 _model_server_stats.parse_time_ms 5 _model_server_stats.create_model_time_ms 2 _model_server_stats.query_time_ms 305 _model_server_stats.encode_time_ms 1 _model_server_stats.element_count 14 #