data_4QKM # _model_server_result.job_id 1WT4cVlpayeGON1Syp-Ptw _model_server_result.datetime_utc '2025-01-11 02:55:36' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 4qkm # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"F","auth_seq_id":105}' # _entry.id 4QKM # _exptl.entry_id 4QKM _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 356.54 _entity.id 5 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description '(2S)-2,3-dihydroxypropyl (9Z)-octadec-9-enoate' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 4QKM _cell.length_a 30.09 _cell.length_b 30.09 _cell.length_c 67.39 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 4QKM _symmetry.cell_setting ? _symmetry.Int_Tables_number 79 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'I 4' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details tetrameric _pdbx_struct_assembly.oligomeric_count 4 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2,3,4 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 2_685 -x+1,-y+3,z -1 0 0 0 -1 0 0 0 1 30.09 90.27 0 3 'crystal symmetry operation' 3_765 -y+2,x+1,z 0 -1 0 1 0 0 0 0 1 60.18 30.09 0 4 'crystal symmetry operation' 4_475 y-1,-x+2,z 0 1 0 -1 0 0 0 0 1 -30.09 60.18 0 # _struct_asym.details ? _struct_asym.entity_id 5 _struct_asym.id F _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order covale ? covale1 A C ACE 1 A ACE 21 1_555 A N SER 2 A SER 22 1_555 ? ? ? ? A ? ? ? ? ? ? ? 1.327 ? covale ? covale2 A C ACE 1 A ACE 21 1_555 A N SER 2 A SER 22 1_555 ? ? ? ? B ? ? ? ? ? ? ? 1.328 ? covale ? covale3 A C LEU 26 A LEU 46 1_555 A N NH2 27 A NH2 47 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.324 ? metalc ? metalc1 A O SER 2 A SER 22 1_555 B CA CA . A CA 101 1_555 ? A ? ? ? ? ? ? ? ? ? ? 2.469 ? metalc ? metalc2 A O SER 2 A SER 22 1_555 B CA CA . A CA 101 1_555 ? B ? ? ? ? ? ? ? ? ? ? 2.488 ? metalc ? metalc3 A OD2 ASP 4 A ASP 24 1_555 D CA CA . A CA 103 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.324 ? metalc ? metalc4 B CA CA . A CA 101 1_555 G O HOH . A HOH 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.502 ? metalc ? metalc5 D CA CA . A CA 103 1_555 G O HOH . A HOH 202 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.616 ? metalc ? metalc6 D CA CA . A CA 103 1_555 G O HOH . A HOH 206 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.413 ? metalc ? metalc7 D CA CA . A CA 103 1_555 G O HOH . A HOH 207 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.397 ? metalc ? metalc8 D CA CA . A CA 103 1_555 G O HOH . A HOH 214 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.275 ? metalc ? metalc9 D CA CA . A CA 103 1_555 G O HOH . A HOH 215 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.338 ? # _chem_comp.formula 'C21 H40 O4' _chem_comp.formula_weight 356.54 _chem_comp.id OLB _chem_comp.mon_nstd_flag . _chem_comp.name '(2S)-2,3-dihydroxypropyl (9Z)-octadec-9-enoate' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 O19 OLB doub 145 n n C1 O20 OLB sing 146 n n C2 C1 OLB sing 147 n n C3 C2 OLB sing 148 n n C4 C3 OLB sing 149 n n C5 C4 OLB sing 150 n n C5 C6 OLB sing 151 n n O20 C21 OLB sing 152 n n C21 C22 OLB sing 153 n n C22 C24 OLB sing 154 n n O23 C22 OLB sing 155 n n C24 O25 OLB sing 156 n n C6 C7 OLB sing 157 n n C7 C8 OLB sing 158 n n C8 C9 OLB sing 159 n n C9 C10 OLB doub 160 z n C10 C11 OLB sing 161 n n C2 H2 OLB sing 162 n n C2 H2A OLB sing 163 n n C3 H3 OLB sing 164 n n C3 H3A OLB sing 165 n n C4 H4 OLB sing 166 n n C4 H4A OLB sing 167 n n C5 H5 OLB sing 168 n n C5 H5A OLB sing 169 n n C21 H21 OLB sing 170 n n C21 H21A OLB sing 171 n n C22 H22 OLB sing 172 n n O23 HO23 OLB sing 173 n n C24 H24 OLB sing 174 n n C24 H24A OLB sing 175 n n O25 HO25 OLB sing 176 n n C6 H16 OLB sing 177 n n C6 H17 OLB sing 178 n n C7 H18 OLB sing 179 n n C7 H19 OLB sing 180 n n C8 H20 OLB sing 181 n n C8 H211 OLB sing 182 n n C9 H221 OLB sing 183 n n C10 H23 OLB sing 184 n n C11 H241 OLB sing 185 n n C11 H25 OLB sing 186 n n C11 C12 OLB sing 187 n n C12 H26 OLB sing 188 n n C12 C13 OLB sing 189 n n C12 H27 OLB sing 190 n n C13 C14 OLB sing 191 n n C13 H28 OLB sing 192 n n C13 H29 OLB sing 193 n n C14 H30 OLB sing 194 n n C14 H31 OLB sing 195 n n C14 C15 OLB sing 196 n n C15 C16 OLB sing 197 n n C15 H32 OLB sing 198 n n C15 H33 OLB sing 199 n n C16 H34 OLB sing 200 n n C16 H35 OLB sing 201 n n C16 C17 OLB sing 202 n n C17 C18 OLB sing 203 n n C17 H36 OLB sing 204 n n C17 H37 OLB sing 205 n n C18 H38 OLB sing 206 n n C18 H39 OLB sing 207 n n C18 H40 OLB sing 208 n n # _atom_sites.entry_id 4QKM _atom_sites.fract_transf_matrix[1][1] 0.033234 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.033234 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.014839 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 CA A 1 101 1 CA CA . C 3 CL A 1 102 1 CL CL . D 2 CA A 1 103 1 CA CA . E 4 EDO A 1 104 1 EDO EDO . F 5 OLB A 1 105 1 OLB OLB . G 6 HOH A 1 201 1 HOH HOH . G 6 HOH A 2 202 2 HOH HOH . G 6 HOH A 3 203 3 HOH HOH . G 6 HOH A 4 204 4 HOH HOH . G 6 HOH A 5 205 5 HOH HOH . G 6 HOH A 6 206 6 HOH HOH . G 6 HOH A 7 207 7 HOH HOH . G 6 HOH A 8 208 8 HOH HOH . G 6 HOH A 9 209 9 HOH HOH . G 6 HOH A 10 210 10 HOH HOH . G 6 HOH A 11 211 11 HOH HOH . G 6 HOH A 12 212 12 HOH HOH . G 6 HOH A 13 213 13 HOH HOH . G 6 HOH A 14 214 14 HOH HOH . G 6 HOH A 15 215 15 HOH HOH . G 6 HOH A 16 216 16 HOH HOH . G 6 HOH A 17 217 17 HOH HOH . G 6 HOH A 18 218 18 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 OLB . . . F 5 11.799 31.947 11.547 1 92.39 ? C1 OLB 105 A 1 HETATM 2 C C2 OLB . . . F 5 11.68 32.551 10.145 1 91.15 ? C2 OLB 105 A 1 HETATM 3 C C3 OLB . . . F 5 12.606 31.784 9.171 1 89.93 ? C3 OLB 105 A 1 HETATM 4 C C4 OLB . . . F 5 12.838 32.623 7.933 1 88.81 ? C4 OLB 105 A 1 HETATM 5 C C5 OLB . . . F 5 13.52 31.77 6.854 1 87.96 ? C5 OLB 105 A 1 HETATM 6 O O19 OLB . . . F 5 12.068 30.763 11.68 1 92.62 ? O19 OLB 105 A 1 HETATM 7 O O20 OLB . . . F 5 11.527 32.746 12.691 1 93.24 ? O20 OLB 105 A 1 HETATM 8 C C21 OLB . . . F 5 10.277 33.467 12.617 1 93.84 ? C21 OLB 105 A 1 HETATM 9 C C22 OLB . . . F 5 10.376 34.748 13.443 1 94.18 ? C22 OLB 105 A 1 HETATM 10 O O23 OLB . . . F 5 9.544 35.735 12.881 1 94.17 ? O23 OLB 105 A 1 HETATM 11 C C24 OLB . . . F 5 9.943 34.47 14.837 1 94.36 ? C24 OLB 105 A 1 HETATM 12 O O25 OLB . . . F 5 10.546 35.423 15.685 1 94.36 ? O25 OLB 105 A 1 HETATM 13 C C6 OLB . . . F 5 13.515 32.544 5.51 1 87.42 ? C6 OLB 105 A 1 HETATM 14 C C7 OLB . . . F 5 13.888 31.573 4.341 1 87.15 ? C7 OLB 105 A 1 HETATM 15 C C8 OLB . . . F 5 13.35 32.151 2.994 1 87.13 ? C8 OLB 105 A 1 HETATM 16 C C9 OLB . . . F 5 14.122 31.545 1.84 1 87.28 ? C9 OLB 105 A 1 HETATM 17 C C10 OLB . . . F 5 14.295 32.268 0.662 1 87.6 ? C10 OLB 105 A 1 HETATM 18 C C11 OLB . . . F 5 15.215 31.715 -0.452 1 88.01 ? C11 OLB 105 A 1 HETATM 19 H H2 OLB . . . F 5 10.743 32.48 9.834 1 109.38 ? H2 OLB 105 A 1 HETATM 20 H H2A OLB . . . F 5 11.943 33.493 10.172 1 109.38 ? H2A OLB 105 A 1 HETATM 21 H H3 OLB . . . F 5 13.465 31.603 9.611 1 107.91 ? H3 OLB 105 A 1 HETATM 22 H H3A OLB . . . F 5 12.186 30.939 8.919 1 107.91 ? H3A OLB 105 A 1 HETATM 23 H H4 OLB . . . F 5 13.41 33.384 8.157 1 106.57 ? H4 OLB 105 A 1 HETATM 24 H H4A OLB . . . F 5 11.989 32.945 7.6 1 106.57 ? H4A OLB 105 A 1 HETATM 25 H H5 OLB . . . F 5 14.438 31.584 7.119 1 105.55 ? H5 OLB 105 A 1 HETATM 26 H H5A OLB . . . F 5 13.035 30.93 6.748 1 105.55 ? H5A OLB 105 A 1 HETATM 27 H H21 OLB . . . F 5 10.085 33.699 11.669 1 112.6 ? H21 OLB 105 A 1 HETATM 28 H H21A OLB . . . F 5 9.553 32.904 12.97 1 112.6 ? H21A OLB 105 A 1 HETATM 29 H H22 OLB . . . F 5 11.298 35.064 13.446 1 113.02 ? H22 OLB 105 A 1 HETATM 30 H HO23 OLB . . . F 5 8.774 35.358 12.609 1 113 ? HO23 OLB 105 A 1 HETATM 31 H H24 OLB . . . F 5 8.959 34.53 14.873 1 113.23 ? H24 OLB 105 A 1 HETATM 32 H H24A OLB . . . F 5 10.222 33.564 15.069 1 113.23 ? H24A OLB 105 A 1 HETATM 33 H HO25 OLB . . . F 5 10.332 35.331 16.531 1 113.23 ? HO25 OLB 105 A 1 HETATM 34 H H16 OLB . . . F 5 12.621 32.918 5.352 1 104.9 ? H16 OLB 105 A 1 HETATM 35 H H17 OLB . . . F 5 14.169 33.269 5.551 1 104.9 ? H17 OLB 105 A 1 HETATM 36 H H18 OLB . . . F 5 14.873 31.479 4.29 1 104.57 ? H18 OLB 105 A 1 HETATM 37 H H19 OLB . . . F 5 13.482 30.689 4.505 1 104.57 ? H19 OLB 105 A 1 HETATM 38 H H20 OLB . . . F 5 12.399 31.932 2.902 1 104.56 ? H20 OLB 105 A 1 HETATM 39 H H211 OLB . . . F 5 13.464 33.124 2.987 1 104.56 ? H211 OLB 105 A 1 HETATM 40 H H221 OLB . . . F 5 14.457 30.64 1.905 1 104.74 ? H221 OLB 105 A 1 HETATM 41 C C12 OLB . . . F 5 15.172 32.658 -1.68 1 88.43 ? C12 OLB 105 A 1 HETATM 42 H H23 OLB . . . F 5 13.876 33.159 0.562 1 105.12 ? H23 OLB 105 A 1 HETATM 43 H H241 OLB . . . F 5 16.129 31.655 -0.117 1 105.61 ? H241 OLB 105 A 1 HETATM 44 C C13 OLB . . . F 5 16.293 32.271 -2.659 1 88.89 ? C13 OLB 105 A 1 HETATM 45 H H25 OLB . . . F 5 14.902 30.812 -0.719 1 105.61 ? H25 OLB 105 A 1 HETATM 46 C C14 OLB . . . F 5 17.603 32.946 -2.231 1 89.33 ? C14 OLB 105 A 1 HETATM 47 H H26 OLB . . . F 5 15.306 33.591 -1.381 1 106.12 ? H26 OLB 105 A 1 HETATM 48 H H27 OLB . . . F 5 14.3 32.578 -2.109 1 106.12 ? H27 OLB 105 A 1 HETATM 49 H H28 OLB . . . F 5 16.409 31.315 -2.648 1 106.66 ? H28 OLB 105 A 1 HETATM 50 C C15 OLB . . . F 5 18.772 32.376 -3.066 1 89.75 ? C15 OLB 105 A 1 HETATM 51 H H29 OLB . . . F 5 16.069 32.561 -3.575 1 106.66 ? H29 OLB 105 A 1 HETATM 52 C C16 OLB . . . F 5 19.989 33.313 -2.931 1 90.13 ? C16 OLB 105 A 1 HETATM 53 H H30 OLB . . . F 5 17.533 33.928 -2.381 1 107.2 ? H30 OLB 105 A 1 HETATM 54 H H31 OLB . . . F 5 17.766 32.774 -1.282 1 107.2 ? H31 OLB 105 A 1 HETATM 55 H H32 OLB . . . F 5 18.967 31.476 -2.752 1 107.7 ? H32 OLB 105 A 1 HETATM 56 C C17 OLB . . . F 5 20.112 34.166 -4.182 1 90.47 ? C17 OLB 105 A 1 HETATM 57 H H33 OLB . . . F 5 18.498 32.332 -4.016 1 107.7 ? H33 OLB 105 A 1 HETATM 58 C C18 OLB . . . F 5 18.879 35.08 -4.317 1 90.68 ? C18 OLB 105 A 1 HETATM 59 H H34 OLB . . . F 5 19.854 33.895 -2.166 1 108.16 ? H34 OLB 105 A 1 HETATM 60 H H35 OLB . . . F 5 20.831 32.814 -2.809 1 108.16 ? H35 OLB 105 A 1 HETATM 61 H H36 OLB . . . F 5 20.928 34.723 -4.121 1 108.56 ? H36 OLB 105 A 1 HETATM 62 H H37 OLB . . . F 5 20.175 33.586 -4.967 1 108.56 ? H37 OLB 105 A 1 HETATM 63 H H38 OLB . . . F 5 19.03 35.729 -5.04 1 108.81 ? H38 OLB 105 A 1 HETATM 64 H H39 OLB . . . F 5 18.731 35.562 -3.469 1 108.81 ? H39 OLB 105 A 1 HETATM 65 H H40 OLB . . . F 5 18.09 34.537 -4.528 1 108.81 ? H40 OLB 105 A 1 # _model_server_stats.io_time_ms 6 _model_server_stats.parse_time_ms 7 _model_server_stats.create_model_time_ms 2 _model_server_stats.query_time_ms 259 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 65 #