data_4QKN
#
_model_server_result.job_id            1gjJH9fOfq4OaKkXGB2U4w 
_model_server_result.datetime_utc      '2024-11-21 16:44:09' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          4qkn 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"E","auth_seq_id":604}' 
#
_entry.id    4QKN 
#
_exptl.entry_id    4QKN 
_exptl.method      'X-RAY DIFFRACTION' 
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_entity.details                     ? 
_entity.formula_weight              92.094 
_entity.id                          5 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            GLYCEROL 
_entity.pdbx_number_of_molecules    1 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         120 
_cell.entry_id            4QKN 
_cell.length_a            141.26 
_cell.length_b            141.26 
_cell.length_c            83.58 
_cell.Z_PDB               9 
_cell.pdbx_unique_axis    ? 
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_symmetry.entry_id                 4QKN 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        146 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'H 3' 
#
_pdbx_struct_assembly.method_details        PISA 
_pdbx_struct_assembly.oligomeric_details    monomeric 
_pdbx_struct_assembly.oligomeric_count      1 
_pdbx_struct_assembly.details               author_and_software_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
_struct_asym.details                        ? 
_struct_asym.entity_id                      5 
_struct_asym.id                             E 
_struct_asym.pdbx_modified                  N 
_struct_asym.pdbx_blank_PDB_chainid_flag    N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
metalc ? metalc1 A NE2 HIS 204 A HIS 231 1_555 D MN MN . A MN 603 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.296 ? 
metalc ? metalc2 A OD1 ASP 206 A ASP 233 1_555 D MN MN . A MN 603 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.167 ? 
metalc ? metalc3 A NE2 HIS 280 A HIS 307 1_555 D MN MN . A MN 603 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.321 ? 
metalc ? metalc4 B O2' OGA . A OGA 601 1_555 D MN MN . A MN 603 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.935 ? 
metalc ? metalc5 B O2 OGA . A OGA 601 1_555 D MN MN . A MN 603 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.242 ? 
metalc ? metalc6 D MN MN . A MN 603 1_555 F O HOH . A HOH 767 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.234 ? 
#
_chem_comp.formula           'C3 H8 O3' 
_chem_comp.formula_weight    92.094 
_chem_comp.id                GOL 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              GLYCEROL 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     GLYCERIN;PROPANE-1,2,3-TRIOL 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
C1 O1 GOL sing 129 n n 
C1 C2 GOL sing 130 n n 
C1 H11 GOL sing 131 n n 
C1 H12 GOL sing 132 n n 
O1 HO1 GOL sing 133 n n 
C2 O2 GOL sing 134 n n 
C2 C3 GOL sing 135 n n 
C2 H2 GOL sing 136 n n 
O2 HO2 GOL sing 137 n n 
C3 O3 GOL sing 138 n n 
C3 H31 GOL sing 139 n n 
C3 H32 GOL sing 140 n n 
O3 HO3 GOL sing 141 n n 
#
_atom_sites.entry_id                     4QKN 
_atom_sites.fract_transf_matrix[1][1]    0.007079 
_atom_sites.fract_transf_matrix[1][2]    0.004087 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.008174 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.011965 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
B 2 OGA A 1 601 1550 OGA OGA . 
C 3 JMS A 1 602 1 JMS JMS . 
D 4 MN A 1 603 1 MN MN . 
E 5 GOL A 1 604 1 GOL GOL . 
F 6 HOH A 1 701 1 HOH HOH . 
F 6 HOH A 2 702 2 HOH HOH . 
F 6 HOH A 3 703 3 HOH HOH . 
F 6 HOH A 4 704 4 HOH HOH . 
F 6 HOH A 5 705 5 HOH HOH . 
F 6 HOH A 6 706 6 HOH HOH . 
F 6 HOH A 7 707 7 HOH HOH . 
F 6 HOH A 8 708 8 HOH HOH . 
F 6 HOH A 9 709 9 HOH HOH . 
F 6 HOH A 10 710 10 HOH HOH . 
F 6 HOH A 11 711 11 HOH HOH . 
F 6 HOH A 12 712 13 HOH HOH . 
F 6 HOH A 13 713 14 HOH HOH . 
F 6 HOH A 14 714 15 HOH HOH . 
F 6 HOH A 15 715 16 HOH HOH . 
F 6 HOH A 16 716 17 HOH HOH . 
F 6 HOH A 17 717 18 HOH HOH . 
F 6 HOH A 18 718 19 HOH HOH . 
F 6 HOH A 19 719 20 HOH HOH . 
F 6 HOH A 20 720 21 HOH HOH . 
F 6 HOH A 21 721 22 HOH HOH . 
F 6 HOH A 22 722 23 HOH HOH . 
F 6 HOH A 23 723 24 HOH HOH . 
F 6 HOH A 24 724 25 HOH HOH . 
F 6 HOH A 25 725 26 HOH HOH . 
F 6 HOH A 26 726 27 HOH HOH . 
F 6 HOH A 27 727 28 HOH HOH . 
F 6 HOH A 28 728 29 HOH HOH . 
F 6 HOH A 29 729 30 HOH HOH . 
F 6 HOH A 30 730 31 HOH HOH . 
F 6 HOH A 31 731 32 HOH HOH . 
F 6 HOH A 32 732 33 HOH HOH . 
F 6 HOH A 33 733 34 HOH HOH . 
F 6 HOH A 34 734 35 HOH HOH . 
F 6 HOH A 35 735 36 HOH HOH . 
F 6 HOH A 36 736 37 HOH HOH . 
F 6 HOH A 37 737 38 HOH HOH . 
F 6 HOH A 38 738 39 HOH HOH . 
F 6 HOH A 39 739 40 HOH HOH . 
F 6 HOH A 40 740 41 HOH HOH . 
F 6 HOH A 41 741 43 HOH HOH . 
F 6 HOH A 42 742 44 HOH HOH . 
F 6 HOH A 43 743 45 HOH HOH . 
F 6 HOH A 44 744 46 HOH HOH . 
F 6 HOH A 45 745 47 HOH HOH . 
F 6 HOH A 46 746 48 HOH HOH . 
F 6 HOH A 47 747 49 HOH HOH . 
F 6 HOH A 48 748 50 HOH HOH . 
F 6 HOH A 49 749 51 HOH HOH . 
F 6 HOH A 50 750 52 HOH HOH . 
F 6 HOH A 51 751 53 HOH HOH . 
F 6 HOH A 52 752 55 HOH HOH . 
F 6 HOH A 53 753 57 HOH HOH . 
F 6 HOH A 54 754 58 HOH HOH . 
F 6 HOH A 55 755 59 HOH HOH . 
F 6 HOH A 56 756 60 HOH HOH . 
F 6 HOH A 57 757 62 HOH HOH . 
F 6 HOH A 58 758 64 HOH HOH . 
F 6 HOH A 59 759 65 HOH HOH . 
F 6 HOH A 60 760 66 HOH HOH . 
F 6 HOH A 61 761 67 HOH HOH . 
F 6 HOH A 62 762 68 HOH HOH . 
F 6 HOH A 63 763 69 HOH HOH . 
F 6 HOH A 64 764 70 HOH HOH . 
F 6 HOH A 65 765 71 HOH HOH . 
F 6 HOH A 66 766 72 HOH HOH . 
F 6 HOH A 67 767 73 HOH HOH . 
F 6 HOH A 68 768 74 HOH HOH . 
F 6 HOH A 69 769 75 HOH HOH . 
F 6 HOH A 70 770 76 HOH HOH . 
F 6 HOH A 71 771 77 HOH HOH . 
F 6 HOH A 72 772 78 HOH HOH . 
F 6 HOH A 73 773 79 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C C1 GOL . . . E 5 169.201 -8.372 28.447 1 51.53 ? C1 GOL 604 A 1 
HETATM 2 O O1 GOL . . . E 5 170.551 -8.077 28.758 1 52.03 ? O1 GOL 604 A 1 
HETATM 3 C C2 GOL . . . E 5 168.433 -7.082 28.726 1 57.16 ? C2 GOL 604 A 1 
HETATM 4 O O2 GOL . . . E 5 167.645 -7.187 29.9 1 49.22 ? O2 GOL 604 A 1 
HETATM 5 C C3 GOL . . . E 5 167.588 -6.688 27.525 1 45.02 ? C3 GOL 604 A 1 
HETATM 6 O O3 GOL . . . E 5 166.702 -5.657 27.876 1 43.21 ? O3 GOL 604 A 1 
#
_model_server_stats.io_time_ms              9 
_model_server_stats.parse_time_ms           10 
_model_server_stats.create_model_time_ms    10 
_model_server_stats.query_time_ms           361 
_model_server_stats.encode_time_ms          2 
_model_server_stats.element_count           6 
#