data_4QKZ # _model_server_result.job_id 9zo30wnBLL19FGfRn6O8fg _model_server_result.datetime_utc '2024-11-15 06:33:15' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 4qkz # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"F","auth_seq_id":305}' # _entry.id 4QKZ # _exptl.entry_id 4QKZ _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 407.273 _entity.id 4 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description '{[(biphenyl-4-ylsulfonyl)amino]methanediyl}bis(phosphonic acid)' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 4QKZ _cell.length_a 32.91 _cell.length_b 68.69 _cell.length_c 70.69 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 4QKZ _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 21 21 21' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 4 _struct_asym.id F _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A O ASP 58 A ASP 137 1_555 B CA CA . A CA 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.307 ? metalc ? metalc2 A NE2 HIS 68 A HIS 147 1_555 D ZN ZN . A ZN 303 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.022 ? metalc ? metalc3 A OD2 ASP 70 A ASP 149 1_555 D ZN ZN . A ZN 303 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.039 ? metalc ? metalc4 A OD1 ASP 75 A ASP 154 1_555 C CA CA . A CA 302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.321 ? metalc ? metalc5 A O GLY 76 A GLY 155 1_555 C CA CA . A CA 302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.277 ? metalc ? metalc6 A O ASN 78 A ASN 157 1_555 C CA CA . A CA 302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.356 ? metalc ? metalc7 A O ILE 80 A ILE 159 1_555 C CA CA . A CA 302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.286 ? metalc ? metalc8 A NE2 HIS 83 A HIS 162 1_555 D ZN ZN . A ZN 303 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.02 ? metalc ? metalc9 A O GLY 90 A GLY 169 1_555 B CA CA . A CA 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.299 ? metalc ? metalc10 A O GLY 92 A GLY 171 1_555 B CA CA . A CA 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.29 ? metalc ? metalc11 A OD1 ASP 94 A ASP 173 1_555 B CA CA . A CA 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.42 ? metalc ? metalc12 A ND1 HIS 96 A HIS 175 1_555 D ZN ZN . A ZN 303 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.07 ? metalc ? metalc13 A OD2 ASP 98 A ASP 177 1_555 C CA CA . A CA 302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.317 ? metalc ? metalc14 A OE2 GLU 101 A GLU 180 1_555 C CA CA . A CA 302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.298 ? metalc ? metalc15 A NE2 HIS 118 A HIS 197 1_555 E ZN ZN . A ZN 304 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.056 ? metalc ? metalc16 A NE2 HIS 122 A HIS 201 1_555 E ZN ZN . A ZN 304 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.07 ? metalc ? metalc17 B CA CA . A CA 301 1_555 H O HOH . A HOH 408 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.33 ? metalc ? metalc18 B CA CA . A CA 301 1_555 H O HOH . A HOH 412 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.394 ? metalc ? metalc19 E ZN ZN . A ZN 304 1_555 F OAF QZK . A QZK 305 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.853 ? # _chem_comp.formula 'C13 H15 N O8 P2 S' _chem_comp.formula_weight 407.273 _chem_comp.id QZK _chem_comp.mon_nstd_flag . _chem_comp.name '{[(biphenyl-4-ylsulfonyl)amino]methanediyl}bis(phosphonic acid)' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag OAA PAW QZK doub 289 n n OAG PAX QZK doub 290 n n OAB PAX QZK sing 291 n n PAX OAH QZK sing 292 n n PAX CAV QZK sing 293 n n PAW OAE QZK sing 294 n n PAW OAF QZK sing 295 n n PAW CAV QZK sing 296 n n CAV NAR QZK sing 297 n n NAR SAY QZK sing 298 n n OAC SAY QZK doub 299 n n SAY CAU QZK sing 300 n n SAY OAD QZK doub 301 n n CAU CAQ QZK doub 302 n y CAU CAP QZK sing 303 n y CAQ CAO QZK sing 304 n y CAP CAN QZK doub 305 n y CAO CAT QZK doub 306 n y CAN CAT QZK sing 307 n y CAT CAS QZK sing 308 n n CAM CAS QZK doub 309 n y CAM CAK QZK sing 310 n y CAS CAL QZK sing 311 n y CAK CAI QZK doub 312 n y CAL CAJ QZK doub 313 n y CAI CAJ QZK sing 314 n y OAE H1 QZK sing 315 n n OAF H2 QZK sing 316 n n CAV H3 QZK sing 317 n n OAH H4 QZK sing 318 n n OAB H5 QZK sing 319 n n NAR H6 QZK sing 320 n n CAQ H7 QZK sing 321 n n CAO H8 QZK sing 322 n n CAP H9 QZK sing 323 n n CAN H10 QZK sing 324 n n CAL H11 QZK sing 325 n n CAJ H12 QZK sing 326 n n CAI H13 QZK sing 327 n n CAK H14 QZK sing 328 n n CAM H15 QZK sing 329 n n # _atom_sites.entry_id 4QKZ _atom_sites.fract_transf_matrix[1][1] 0.030386 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.014558 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.014146 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 CA A 1 301 996 CA CA . C 2 CA A 1 302 997 CA CA . D 3 ZN A 1 303 998 ZN ZN . E 3 ZN A 1 304 999 ZN ZN . F 4 QZK A 1 305 1 QZK QZK . G 5 MES A 1 306 401 MES MES . H 6 HOH A 1 401 3 HOH HOH . H 6 HOH A 2 402 4 HOH HOH . H 6 HOH A 3 403 5 HOH HOH . H 6 HOH A 4 404 6 HOH HOH . H 6 HOH A 5 405 7 HOH HOH . H 6 HOH A 6 406 8 HOH HOH . H 6 HOH A 7 407 9 HOH HOH . H 6 HOH A 8 408 10 HOH HOH . H 6 HOH A 9 409 11 HOH HOH . H 6 HOH A 10 410 12 HOH HOH . H 6 HOH A 11 411 13 HOH HOH . H 6 HOH A 12 412 15 HOH HOH . H 6 HOH A 13 413 16 HOH HOH . H 6 HOH A 14 414 17 HOH HOH . H 6 HOH A 15 415 18 HOH HOH . H 6 HOH A 16 416 19 HOH HOH . H 6 HOH A 17 417 20 HOH HOH . H 6 HOH A 18 418 21 HOH HOH . H 6 HOH A 19 419 23 HOH HOH . H 6 HOH A 20 420 24 HOH HOH . H 6 HOH A 21 421 25 HOH HOH . H 6 HOH A 22 422 26 HOH HOH . H 6 HOH A 23 423 28 HOH HOH . H 6 HOH A 24 424 29 HOH HOH . H 6 HOH A 25 425 30 HOH HOH . H 6 HOH A 26 426 31 HOH HOH . H 6 HOH A 27 427 32 HOH HOH . H 6 HOH A 28 428 33 HOH HOH . H 6 HOH A 29 429 34 HOH HOH . H 6 HOH A 30 430 35 HOH HOH . H 6 HOH A 31 431 36 HOH HOH . H 6 HOH A 32 432 37 HOH HOH . H 6 HOH A 33 433 38 HOH HOH . H 6 HOH A 34 434 40 HOH HOH . H 6 HOH A 35 435 41 HOH HOH . H 6 HOH A 36 436 45 HOH HOH . H 6 HOH A 37 437 46 HOH HOH . H 6 HOH A 38 438 47 HOH HOH . H 6 HOH A 39 439 48 HOH HOH . H 6 HOH A 40 440 49 HOH HOH . H 6 HOH A 41 441 50 HOH HOH . H 6 HOH A 42 442 51 HOH HOH . H 6 HOH A 43 443 52 HOH HOH . H 6 HOH A 44 444 53 HOH HOH . H 6 HOH A 45 445 54 HOH HOH . H 6 HOH A 46 446 55 HOH HOH . H 6 HOH A 47 447 56 HOH HOH . H 6 HOH A 48 448 57 HOH HOH . H 6 HOH A 49 449 59 HOH HOH . H 6 HOH A 50 450 60 HOH HOH . H 6 HOH A 51 451 63 HOH HOH . H 6 HOH A 52 452 64 HOH HOH . H 6 HOH A 53 453 65 HOH HOH . H 6 HOH A 54 454 66 HOH HOH . H 6 HOH A 55 455 68 HOH HOH . H 6 HOH A 56 456 70 HOH HOH . H 6 HOH A 57 457 71 HOH HOH . H 6 HOH A 58 458 72 HOH HOH . H 6 HOH A 59 459 73 HOH HOH . H 6 HOH A 60 460 74 HOH HOH . H 6 HOH A 61 461 75 HOH HOH . H 6 HOH A 62 462 76 HOH HOH . H 6 HOH A 63 463 78 HOH HOH . H 6 HOH A 64 464 79 HOH HOH . H 6 HOH A 65 465 80 HOH HOH . H 6 HOH A 66 466 81 HOH HOH . H 6 HOH A 67 467 83 HOH HOH . H 6 HOH A 68 468 84 HOH HOH . H 6 HOH A 69 469 85 HOH HOH . H 6 HOH A 70 470 86 HOH HOH . H 6 HOH A 71 471 87 HOH HOH . H 6 HOH A 72 472 88 HOH HOH . H 6 HOH A 73 473 89 HOH HOH . H 6 HOH A 74 474 90 HOH HOH . H 6 HOH A 75 475 91 HOH HOH . H 6 HOH A 76 476 92 HOH HOH . H 6 HOH A 77 477 94 HOH HOH . H 6 HOH A 78 478 95 HOH HOH . H 6 HOH A 79 479 96 HOH HOH . H 6 HOH A 80 480 97 HOH HOH . H 6 HOH A 81 481 98 HOH HOH . H 6 HOH A 82 482 99 HOH HOH . H 6 HOH A 83 483 100 HOH HOH . H 6 HOH A 84 484 101 HOH HOH . H 6 HOH A 85 485 102 HOH HOH . H 6 HOH A 86 486 105 HOH HOH . H 6 HOH A 87 487 106 HOH HOH . H 6 HOH A 88 488 109 HOH HOH . H 6 HOH A 89 489 110 HOH HOH . H 6 HOH A 90 490 111 HOH HOH . H 6 HOH A 91 491 112 HOH HOH . H 6 HOH A 92 492 113 HOH HOH . H 6 HOH A 93 493 114 HOH HOH . H 6 HOH A 94 494 116 HOH HOH . H 6 HOH A 95 495 118 HOH HOH . H 6 HOH A 96 496 120 HOH HOH . H 6 HOH A 97 497 121 HOH HOH . H 6 HOH A 98 498 124 HOH HOH . H 6 HOH A 99 499 125 HOH HOH . H 6 HOH A 100 500 128 HOH HOH . H 6 HOH A 101 501 129 HOH HOH . H 6 HOH A 102 502 130 HOH HOH . H 6 HOH A 103 503 131 HOH HOH . H 6 HOH A 104 504 136 HOH HOH . H 6 HOH A 105 505 138 HOH HOH . H 6 HOH A 106 506 139 HOH HOH . H 6 HOH A 107 507 140 HOH HOH . H 6 HOH A 108 508 142 HOH HOH . H 6 HOH A 109 509 143 HOH HOH . H 6 HOH A 110 510 144 HOH HOH . H 6 HOH A 111 511 146 HOH HOH . H 6 HOH A 112 512 149 HOH HOH . H 6 HOH A 113 513 151 HOH HOH . H 6 HOH A 114 514 156 HOH HOH . H 6 HOH A 115 515 157 HOH HOH . H 6 HOH A 116 516 158 HOH HOH . H 6 HOH A 117 517 162 HOH HOH . H 6 HOH A 118 518 167 HOH HOH . H 6 HOH A 119 519 170 HOH HOH . H 6 HOH A 120 520 172 HOH HOH . H 6 HOH A 121 521 174 HOH HOH . H 6 HOH A 122 522 175 HOH HOH . H 6 HOH A 123 523 180 HOH HOH . H 6 HOH A 124 524 181 HOH HOH . H 6 HOH A 125 525 183 HOH HOH . H 6 HOH A 126 526 184 HOH HOH . H 6 HOH A 127 527 188 HOH HOH . H 6 HOH A 128 528 192 HOH HOH . H 6 HOH A 129 529 193 HOH HOH . H 6 HOH A 130 530 194 HOH HOH . H 6 HOH A 131 531 200 HOH HOH . H 6 HOH A 132 532 201 HOH HOH . H 6 HOH A 133 533 202 HOH HOH . H 6 HOH A 134 534 205 HOH HOH . H 6 HOH A 135 535 206 HOH HOH . H 6 HOH A 136 536 207 HOH HOH . H 6 HOH A 137 537 209 HOH HOH . H 6 HOH A 138 538 210 HOH HOH . H 6 HOH A 139 539 212 HOH HOH . H 6 HOH A 140 540 213 HOH HOH . H 6 HOH A 141 541 214 HOH HOH . H 6 HOH A 142 542 215 HOH HOH . H 6 HOH A 143 543 219 HOH HOH . H 6 HOH A 144 544 220 HOH HOH . H 6 HOH A 145 545 226 HOH HOH . H 6 HOH A 146 546 228 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 O OAE QZK . . . F 4 8.8 9.012 17.238 1 9.89 ? OAE QZK 305 A 1 HETATM 2 P PAW QZK . . . F 4 10.182 9.582 16.9 1 10 ? PAW QZK 305 A 1 HETATM 3 O OAF QZK . . . F 4 10.313 10.973 17.54 1 9.72 ? OAF QZK 305 A 1 HETATM 4 O OAA QZK . . . F 4 10.554 9.662 15.447 1 11.16 ? OAA QZK 305 A 1 HETATM 5 C CAV QZK . . . F 4 11.462 8.576 17.743 1 10.2 ? CAV QZK 305 A 1 HETATM 6 P PAX QZK . . . F 4 11.984 7.075 16.765 1 11.69 ? PAX QZK 305 A 1 HETATM 7 O OAG QZK . . . F 4 12.744 7.633 15.506 1 12.18 ? OAG QZK 305 A 1 HETATM 8 O OAH QZK . . . F 4 12.984 6.33 17.732 1 12.59 ? OAH QZK 305 A 1 HETATM 9 O OAB QZK . . . F 4 10.822 6.204 16.488 1 12.9 ? OAB QZK 305 A 1 HETATM 10 N NAR QZK . . . F 4 10.909 8.089 19.016 1 10.83 ? NAR QZK 305 A 1 HETATM 11 S SAY QZK . . . F 4 11.647 8.563 20.389 1 12.04 ? SAY QZK 305 A 1 HETATM 12 O OAC QZK . . . F 4 13.139 8.649 20.239 1 12.21 ? OAC QZK 305 A 1 HETATM 13 O OAD QZK . . . F 4 11.161 7.629 21.462 1 11.01 ? OAD QZK 305 A 1 HETATM 14 C CAU QZK . . . F 4 11.045 10.136 20.985 1 11.21 ? CAU QZK 305 A 1 HETATM 15 C CAQ QZK . . . F 4 11.902 11.23 21.106 1 11.54 ? CAQ QZK 305 A 1 HETATM 16 C CAO QZK . . . F 4 11.45 12.435 21.615 1 11.09 ? CAO QZK 305 A 1 HETATM 17 C CAP QZK . . . F 4 9.724 10.272 21.411 1 10.66 ? CAP QZK 305 A 1 HETATM 18 C CAN QZK . . . F 4 9.25 11.48 21.919 1 10.79 ? CAN QZK 305 A 1 HETATM 19 C CAT QZK . . . F 4 10.111 12.588 22.031 1 10.53 ? CAT QZK 305 A 1 HETATM 20 C CAS QZK . . . F 4 9.656 13.822 22.579 1 9.68 ? CAS QZK 305 A 1 HETATM 21 C CAL QZK . . . F 4 8.78 13.824 23.673 1 9.93 ? CAL QZK 305 A 1 HETATM 22 C CAJ QZK . . . F 4 8.335 15.02 24.236 1 9.97 ? CAJ QZK 305 A 1 HETATM 23 C CAI QZK . . . F 4 8.841 16.236 23.761 1 11.19 ? CAI QZK 305 A 1 HETATM 24 C CAK QZK . . . F 4 9.757 16.271 22.704 1 10.1 ? CAK QZK 305 A 1 HETATM 25 C CAM QZK . . . F 4 10.188 15.058 22.137 1 9.28 ? CAM QZK 305 A 1 # _model_server_stats.io_time_ms 7 _model_server_stats.parse_time_ms 7 _model_server_stats.create_model_time_ms 14 _model_server_stats.query_time_ms 245 _model_server_stats.encode_time_ms 3 _model_server_stats.element_count 25 #