data_4QL0 # _model_server_result.job_id G-JwPlBbmGajlVC_XppJmg _model_server_result.datetime_utc '2024-11-23 02:51:41' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 4ql0 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"D","auth_seq_id":603}' # _entry.id 4QL0 # _exptl.entry_id 4QL0 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 292.369 _entity.id 4 _entity.src_method man _entity.type non-polymer _entity.pdbx_description 'octyl beta-D-glucopyranoside' _entity.pdbx_number_of_molecules 3 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 4QL0 _cell.length_a 106.38 _cell.length_b 136.95 _cell.length_c 110.97 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 4QL0 _symmetry.cell_setting ? _symmetry.Int_Tables_number 20 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'C 2 2 21' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 3_555 -x,y,-z+1/2 -1 0 0 0 1 0 0 0 -1 0 0 55.485 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 4 D N N ? 4 E N N ? 4 G N N # _chem_comp.formula 'C14 H28 O6' _chem_comp.formula_weight 292.369 _chem_comp.id BOG _chem_comp.mon_nstd_flag n _chem_comp.name 'octyl beta-D-glucopyranoside' _chem_comp.type d-saccharide _chem_comp.pdbx_synonyms 'Beta-Octylglucoside;octyl beta-D-glucoside;octyl D-glucoside;octyl glucoside' # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 O1 BOG sing 107 n n C1 C2 BOG sing 108 n n C1 O5 BOG sing 109 n n C1 H1 BOG sing 110 n n O1 C1' BOG sing 111 n n C2 O2 BOG sing 112 n n C2 C3 BOG sing 113 n n C2 H2 BOG sing 114 n n O2 HO2 BOG sing 115 n n C3 O3 BOG sing 116 n n C3 C4 BOG sing 117 n n C3 H3 BOG sing 118 n n O3 HO3 BOG sing 119 n n C4 O4 BOG sing 120 n n C4 C5 BOG sing 121 n n C4 H4 BOG sing 122 n n O4 HO4 BOG sing 123 n n C5 O5 BOG sing 124 n n C5 C6 BOG sing 125 n n C5 H5 BOG sing 126 n n C6 O6 BOG sing 127 n n C6 H61 BOG sing 128 n n C6 H62 BOG sing 129 n n O6 HO6 BOG sing 130 n n C1' C2' BOG sing 131 n n C1' "H1'1" BOG sing 132 n n C1' "H1'2" BOG sing 133 n n C2' C3' BOG sing 134 n n C2' "H2'1" BOG sing 135 n n C2' "H2'2" BOG sing 136 n n C3' C4' BOG sing 137 n n C3' "H3'1" BOG sing 138 n n C3' "H3'2" BOG sing 139 n n C4' C5' BOG sing 140 n n C4' "H4'1" BOG sing 141 n n C4' "H4'2" BOG sing 142 n n C5' C6' BOG sing 143 n n C5' "H5'1" BOG sing 144 n n C5' "H5'2" BOG sing 145 n n C6' C7' BOG sing 146 n n C6' "H6'1" BOG sing 147 n n C6' "H6'2" BOG sing 148 n n C7' C8' BOG sing 149 n n C7' "H7'1" BOG sing 150 n n C7' "H7'2" BOG sing 151 n n C8' "H8'1" BOG sing 152 n n C8' "H8'2" BOG sing 153 n n C8' "H8'3" BOG sing 154 n n # _pdbx_chem_comp_identifier.comp_id BOG _pdbx_chem_comp_identifier.identifier b-octylglucoside _pdbx_chem_comp_identifier.type 'IUPAC CARBOHYDRATE SYMBOL' _pdbx_chem_comp_identifier.program PDB-CARE _pdbx_chem_comp_identifier.program_version 1 # _atom_sites.entry_id 4QL0 _atom_sites.fract_transf_matrix[1][1] 0.0094 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.007302 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.009011 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 PGE A 1 601 1 PGE PGE . C 3 PEG A 1 602 1 PEG PEG . D 4 BOG A 1 603 1 BOG BOG . E 4 BOG A 1 604 3 BOG BOG . F 5 PO4 A 1 605 1 PO4 PO4 . G 4 BOG A 1 606 1 BOG BOG . H 6 1PE A 1 607 1 1PE 1PE . I 7 PG4 A 1 608 1 PG4 PG4 . J 8 P6G A 1 609 1 P6G P6G . K 9 HOH A 1 701 1 HOH HOH . K 9 HOH A 2 702 2 HOH HOH . K 9 HOH A 3 703 3 HOH HOH . K 9 HOH A 4 704 4 HOH HOH . K 9 HOH A 5 705 5 HOH HOH . K 9 HOH A 6 706 6 HOH HOH . K 9 HOH A 7 707 7 HOH HOH . K 9 HOH A 8 708 8 HOH HOH . K 9 HOH A 9 709 9 HOH HOH . K 9 HOH A 10 710 10 HOH HOH . K 9 HOH A 11 711 11 HOH HOH . K 9 HOH A 12 712 12 HOH HOH . K 9 HOH A 13 713 20 HOH HOH . K 9 HOH A 14 714 21 HOH HOH . K 9 HOH A 15 715 22 HOH HOH . K 9 HOH A 16 716 23 HOH HOH . K 9 HOH A 17 717 25 HOH HOH . K 9 HOH A 18 718 26 HOH HOH . K 9 HOH A 19 719 28 HOH HOH . K 9 HOH A 20 720 30 HOH HOH . K 9 HOH A 21 721 33 HOH HOH . K 9 HOH A 22 722 38 HOH HOH . K 9 HOH A 23 723 41 HOH HOH . K 9 HOH A 24 724 43 HOH HOH . K 9 HOH A 25 725 45 HOH HOH . K 9 HOH A 26 726 46 HOH HOH . K 9 HOH A 27 727 53 HOH HOH . K 9 HOH A 28 728 55 HOH HOH . K 9 HOH A 29 729 56 HOH HOH . K 9 HOH A 30 730 62 HOH HOH . K 9 HOH A 31 731 64 HOH HOH . K 9 HOH A 32 732 65 HOH HOH . K 9 HOH A 33 733 70 HOH HOH . K 9 HOH A 34 734 76 HOH HOH . K 9 HOH A 35 735 86 HOH HOH . K 9 HOH A 36 736 89 HOH HOH . K 9 HOH A 37 737 94 HOH HOH . K 9 HOH A 38 738 97 HOH HOH . K 9 HOH A 39 739 109 HOH HOH . K 9 HOH A 40 740 110 HOH HOH . K 9 HOH A 41 741 114 HOH HOH . K 9 HOH A 42 742 120 HOH HOH . K 9 HOH A 43 743 121 HOH HOH . K 9 HOH A 44 744 125 HOH HOH . K 9 HOH A 45 745 133 HOH HOH . K 9 HOH A 46 746 135 HOH HOH . K 9 HOH A 47 747 141 HOH HOH . K 9 HOH A 48 748 143 HOH HOH . K 9 HOH A 49 749 144 HOH HOH . K 9 HOH A 50 750 153 HOH HOH . K 9 HOH A 51 751 160 HOH HOH . K 9 HOH A 52 752 166 HOH HOH . K 9 HOH A 53 753 167 HOH HOH . K 9 HOH A 54 754 169 HOH HOH . K 9 HOH A 55 755 170 HOH HOH . K 9 HOH A 56 756 171 HOH HOH . K 9 HOH A 57 757 172 HOH HOH . K 9 HOH A 58 758 173 HOH HOH . K 9 HOH A 59 759 174 HOH HOH . K 9 HOH A 60 760 182 HOH HOH . K 9 HOH A 61 761 185 HOH HOH . K 9 HOH A 62 762 189 HOH HOH . K 9 HOH A 63 763 190 HOH HOH . K 9 HOH A 64 764 191 HOH HOH . K 9 HOH A 65 765 193 HOH HOH . K 9 HOH A 66 766 196 HOH HOH . K 9 HOH A 67 767 206 HOH HOH . K 9 HOH A 68 768 208 HOH HOH . K 9 HOH A 69 769 213 HOH HOH . K 9 HOH A 70 770 215 HOH HOH . K 9 HOH A 71 771 216 HOH HOH . K 9 HOH A 72 772 217 HOH HOH . K 9 HOH A 73 773 227 HOH HOH . K 9 HOH A 74 774 228 HOH HOH . K 9 HOH A 75 775 229 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 BOG . . . D 4 9.049 22.662 -15.994 1 83.94 ? C1 BOG 603 A 1 HETATM 2 O O1 BOG . . . D 4 8.824 23.093 -17.307 1 81.93 ? O1 BOG 603 A 1 HETATM 3 C C2 BOG . . . D 4 9.273 23.884 -15.109 1 82.97 ? C2 BOG 603 A 1 HETATM 4 O O2 BOG . . . D 4 10.671 24.138 -14.988 1 79.82 ? O2 BOG 603 A 1 HETATM 5 C C3 BOG . . . D 4 8.668 23.663 -13.733 1 81.76 ? C3 BOG 603 A 1 HETATM 6 O O3 BOG . . . D 4 8.903 24.803 -12.916 1 79.33 ? O3 BOG 603 A 1 HETATM 7 C C4 BOG . . . D 4 7.174 23.438 -13.871 1 82.44 ? C4 BOG 603 A 1 HETATM 8 O O4 BOG . . . D 4 6.605 23.18 -12.592 1 81.22 ? O4 BOG 603 A 1 HETATM 9 C C5 BOG . . . D 4 6.878 22.263 -14.801 1 84.36 ? C5 BOG 603 A 1 HETATM 10 O O5 BOG . . . D 4 8.048 21.773 -15.494 1 85.12 ? O5 BOG 603 A 1 HETATM 11 C C6 BOG . . . D 4 5.799 22.543 -15.82 1 83.68 ? C6 BOG 603 A 1 HETATM 12 O O6 BOG . . . D 4 5.282 21.343 -16.391 1 82.94 ? O6 BOG 603 A 1 HETATM 13 C C1' BOG . . . D 4 9.598 22.411 -18.303 1 83.11 ? C1' BOG 603 A 1 HETATM 14 C C2' BOG . . . D 4 9.992 23.365 -19.406 1 84.44 ? C2' BOG 603 A 1 HETATM 15 C C3' BOG . . . D 4 10.741 22.657 -20.518 1 86.02 ? C3' BOG 603 A 1 HETATM 16 C C4' BOG . . . D 4 11.381 23.545 -21.575 1 87.48 ? C4' BOG 603 A 1 HETATM 17 C C5' BOG . . . D 4 12.802 23.985 -21.247 1 87.93 ? C5' BOG 603 A 1 HETATM 18 C C6' BOG . . . D 4 13.544 24.637 -22.396 1 89.55 ? C6' BOG 603 A 1 HETATM 19 C C7' BOG . . . D 4 14.111 23.654 -23.419 1 93.59 ? C7' BOG 603 A 1 HETATM 20 C C8' BOG . . . D 4 14.336 24.261 -24.808 1 94.39 ? C8' BOG 603 A 1 HETATM 21 H H1 BOG . . . D 4 9.975 22.091 -15.952 1 84.46 ? H1 BOG 603 A 1 HETATM 22 H H2 BOG . . . D 4 8.783 24.752 -15.548 1 83.55 ? H2 BOG 603 A 1 HETATM 23 H HO2 BOG . . . D 4 10.781 25.054 -14.62 1 79.25 ? HO2 BOG 603 A 1 HETATM 24 H H3 BOG . . . D 4 9.121 22.797 -13.253 1 81.84 ? H3 BOG 603 A 1 HETATM 25 H HO3 BOG . . . D 4 9.859 24.779 -12.651 1 79.53 ? HO3 BOG 603 A 1 HETATM 26 H H4 BOG . . . D 4 6.727 24.346 -14.273 1 82.52 ? H4 BOG 603 A 1 HETATM 27 H HO4 BOG . . . D 4 5.623 23.107 -12.723 1 81.05 ? HO4 BOG 603 A 1 HETATM 28 H H5 BOG . . . D 4 6.511 21.443 -14.186 1 85.09 ? H5 BOG 603 A 1 HETATM 29 H H61 BOG . . . D 4 6.197 23.129 -16.647 1 84.28 ? H61 BOG 603 A 1 HETATM 30 H H62 BOG . . . D 4 4.999 23.118 -15.358 1 83.36 ? H62 BOG 603 A 1 HETATM 31 H HO6 BOG . . . D 4 4.346 21.525 -16.668 1 82.59 ? HO6 BOG 603 A 1 HETATM 32 H "H1'1" BOG . . . D 4 9.019 21.581 -18.707 1 83.36 ? "H1'1" BOG 603 A 1 HETATM 33 H "H1'2" BOG . . . D 4 10.501 21.954 -17.901 1 82.67 ? "H1'2" BOG 603 A 1 HETATM 34 H "H2'1" BOG . . . D 4 10.614 24.159 -18.996 1 84.53 ? "H2'1" BOG 603 A 1 HETATM 35 H "H2'2" BOG . . . D 4 9.118 23.877 -19.804 1 83.98 ? "H2'2" BOG 603 A 1 HETATM 36 H "H3'1" BOG . . . D 4 10.081 21.937 -20.999 1 86.3 ? "H3'1" BOG 603 A 1 HETATM 37 H "H3'2" BOG . . . D 4 11.522 22.047 -20.07 1 85.75 ? "H3'2" BOG 603 A 1 HETATM 38 H "H4'1" BOG . . . D 4 10.756 24.421 -21.745 1 87.54 ? "H4'1" BOG 603 A 1 HETATM 39 H "H4'2" BOG . . . D 4 11.374 23.014 -22.525 1 87.4 ? "H4'2" BOG 603 A 1 HETATM 40 H "H5'1" BOG . . . D 4 13.38 23.132 -20.896 1 88.01 ? "H5'1" BOG 603 A 1 HETATM 41 H "H5'2" BOG . . . D 4 12.781 24.669 -20.4 1 87.92 ? "H5'2" BOG 603 A 1 HETATM 42 H "H6'1" BOG . . . D 4 14.354 25.248 -22.001 1 89.26 ? "H6'1" BOG 603 A 1 HETATM 43 H "H6'2" BOG . . . D 4 12.89 25.348 -22.897 1 89.62 ? "H6'2" BOG 603 A 1 HETATM 44 H "H7'1" BOG . . . D 4 13.455 22.79 -23.51 1 93.99 ? "H7'1" BOG 603 A 1 HETATM 45 H "H7'2" BOG . . . D 4 15.049 23.247 -23.044 1 93.72 ? "H7'2" BOG 603 A 1 HETATM 46 H "H8'1" BOG . . . D 4 14.678 23.516 -25.524 1 94.13 ? "H8'1" BOG 603 A 1 HETATM 47 H "H8'2" BOG . . . D 4 15.082 25.054 -24.808 1 94.49 ? "H8'2" BOG 603 A 1 HETATM 48 H "H8'3" BOG . . . D 4 13.427 24.685 -25.232 1 94.24 ? "H8'3" BOG 603 A 1 # _model_server_stats.io_time_ms 20 _model_server_stats.parse_time_ms 9 _model_server_stats.create_model_time_ms 9 _model_server_stats.query_time_ms 282 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 48 #