data_4QL5 # _model_server_result.job_id M5XPEbHzBeKT1wRT4NX94Q _model_server_result.datetime_utc '2024-12-12 17:58:20' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 4ql5 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"E","auth_seq_id":102}' # _entry.id 4QL5 # _exptl.entry_id 4QL5 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 92.094 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description GLYCEROL _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 4QL5 _cell.length_a 83.636 _cell.length_b 83.636 _cell.length_c 50.575 _cell.Z_PDB 16 _cell.pdbx_unique_axis ? # _symmetry.entry_id 4QL5 _symmetry.cell_setting ? _symmetry.Int_Tables_number 92 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 41 21 2' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details tetrameric _pdbx_struct_assembly.oligomeric_count 4 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 8_666 -y+1,-x+1,-z+3/2 0 -1 0 -1 0 0 0 0 -1 83.636 83.636 75.8625 # _struct_asym.details ? _struct_asym.entity_id 3 _struct_asym.id E _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A OE1 GLU 9 A GLU 8 1_555 D ZN ZN . B ZN 101 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.033 ? metalc ? metalc2 A OE2 GLU 11 A GLU 10 1_555 C ZN ZN . A ZN 101 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.939 ? metalc ? metalc3 A OE1 GLU 11 A GLU 10 1_555 C ZN ZN . A ZN 101 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.562 ? metalc ? metalc4 C ZN ZN . A ZN 101 1_555 G O HOH . A HOH 220 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.163 ? metalc ? metalc5 C ZN ZN . A ZN 101 1_555 B NE2 HIS 31 B HIS 30 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.016 ? metalc ? metalc6 B OE2 GLU 26 B GLU 25 1_555 D ZN ZN . B ZN 101 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.006 ? metalc ? metalc7 B O GLY 30 B GLY 29 1_555 D ZN ZN . B ZN 101 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.029 ? # _chem_comp.formula 'C3 H8 O3' _chem_comp.formula_weight 92.094 _chem_comp.id GOL _chem_comp.mon_nstd_flag . _chem_comp.name GLYCEROL _chem_comp.type non-polymer _chem_comp.pdbx_synonyms GLYCERIN;PROPANE-1,2,3-TRIOL # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 O1 GOL sing 122 n n C1 C2 GOL sing 123 n n C1 H11 GOL sing 124 n n C1 H12 GOL sing 125 n n O1 HO1 GOL sing 126 n n C2 O2 GOL sing 127 n n C2 C3 GOL sing 128 n n C2 H2 GOL sing 129 n n O2 HO2 GOL sing 130 n n C3 O3 GOL sing 131 n n C3 H31 GOL sing 132 n n C3 H32 GOL sing 133 n n O3 HO3 GOL sing 134 n n # _atom_sites.entry_id 4QL5 _atom_sites.fract_transf_matrix[1][1] 0.011957 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.011957 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.019773 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 ZN A 1 101 4 ZN ZN . D 2 ZN B 1 101 3 ZN ZN . E 3 GOL B 1 102 1 GOL GOL . F 4 ACT B 1 103 2 ACT ACT . G 5 HOH A 1 201 1 HOH HOH . G 5 HOH A 2 202 2 HOH HOH . G 5 HOH A 3 203 3 HOH HOH . G 5 HOH A 4 204 5 HOH HOH . G 5 HOH A 5 205 6 HOH HOH . G 5 HOH A 6 206 9 HOH HOH . G 5 HOH A 7 207 14 HOH HOH . G 5 HOH A 8 208 18 HOH HOH . G 5 HOH A 9 209 24 HOH HOH . G 5 HOH A 10 210 25 HOH HOH . G 5 HOH A 11 211 26 HOH HOH . G 5 HOH A 12 212 27 HOH HOH . G 5 HOH A 13 213 30 HOH HOH . G 5 HOH A 14 214 33 HOH HOH . G 5 HOH A 15 215 35 HOH HOH . G 5 HOH A 16 216 36 HOH HOH . G 5 HOH A 17 217 40 HOH HOH . G 5 HOH A 18 218 43 HOH HOH . G 5 HOH A 19 219 49 HOH HOH . G 5 HOH A 20 220 50 HOH HOH . G 5 HOH A 21 221 53 HOH HOH . G 5 HOH A 22 222 55 HOH HOH . G 5 HOH A 23 223 64 HOH HOH . G 5 HOH A 24 224 66 HOH HOH . G 5 HOH A 25 225 67 HOH HOH . G 5 HOH A 26 226 68 HOH HOH . G 5 HOH A 27 227 73 HOH HOH . G 5 HOH A 28 228 87 HOH HOH . G 5 HOH A 29 229 88 HOH HOH . G 5 HOH A 30 230 99 HOH HOH . G 5 HOH A 31 231 100 HOH HOH . G 5 HOH A 32 232 104 HOH HOH . G 5 HOH A 33 233 106 HOH HOH . G 5 HOH A 34 234 109 HOH HOH . G 5 HOH A 35 235 112 HOH HOH . G 5 HOH A 36 236 120 HOH HOH . G 5 HOH A 37 237 121 HOH HOH . H 5 HOH B 1 201 4 HOH HOH . H 5 HOH B 2 202 7 HOH HOH . H 5 HOH B 3 203 8 HOH HOH . H 5 HOH B 4 204 11 HOH HOH . H 5 HOH B 5 205 12 HOH HOH . H 5 HOH B 6 206 13 HOH HOH . H 5 HOH B 7 207 15 HOH HOH . H 5 HOH B 8 208 16 HOH HOH . H 5 HOH B 9 209 19 HOH HOH . H 5 HOH B 10 210 21 HOH HOH . H 5 HOH B 11 211 22 HOH HOH . H 5 HOH B 12 212 23 HOH HOH . H 5 HOH B 13 213 28 HOH HOH . H 5 HOH B 14 214 29 HOH HOH . H 5 HOH B 15 215 31 HOH HOH . H 5 HOH B 16 216 32 HOH HOH . H 5 HOH B 17 217 34 HOH HOH . H 5 HOH B 18 218 37 HOH HOH . H 5 HOH B 19 219 38 HOH HOH . H 5 HOH B 20 220 39 HOH HOH . H 5 HOH B 21 221 41 HOH HOH . H 5 HOH B 22 222 42 HOH HOH . H 5 HOH B 23 223 44 HOH HOH . H 5 HOH B 24 224 46 HOH HOH . H 5 HOH B 25 225 48 HOH HOH . H 5 HOH B 26 226 51 HOH HOH . H 5 HOH B 27 227 52 HOH HOH . H 5 HOH B 28 228 56 HOH HOH . H 5 HOH B 29 229 58 HOH HOH . H 5 HOH B 30 230 59 HOH HOH . H 5 HOH B 31 231 60 HOH HOH . H 5 HOH B 32 232 61 HOH HOH . H 5 HOH B 33 233 62 HOH HOH . H 5 HOH B 34 234 72 HOH HOH . H 5 HOH B 35 235 74 HOH HOH . H 5 HOH B 36 236 75 HOH HOH . H 5 HOH B 37 237 76 HOH HOH . H 5 HOH B 38 238 77 HOH HOH . H 5 HOH B 39 239 78 HOH HOH . H 5 HOH B 40 240 81 HOH HOH . H 5 HOH B 41 241 82 HOH HOH . H 5 HOH B 42 242 84 HOH HOH . H 5 HOH B 43 243 90 HOH HOH . H 5 HOH B 44 244 91 HOH HOH . H 5 HOH B 45 245 92 HOH HOH . H 5 HOH B 46 246 93 HOH HOH . H 5 HOH B 47 247 95 HOH HOH . H 5 HOH B 48 248 96 HOH HOH . H 5 HOH B 49 249 103 HOH HOH . H 5 HOH B 50 250 107 HOH HOH . H 5 HOH B 51 251 108 HOH HOH . H 5 HOH B 52 252 115 HOH HOH . H 5 HOH B 53 253 116 HOH HOH . H 5 HOH B 54 254 117 HOH HOH . H 5 HOH B 55 255 122 HOH HOH . H 5 HOH B 56 256 123 HOH HOH . H 5 HOH B 57 257 124 HOH HOH . H 5 HOH B 58 258 125 HOH HOH . H 5 HOH B 59 259 126 HOH HOH . H 5 HOH B 60 260 127 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 GOL . . . E 3 60.998 55.022 28.075 1 93.28 ? C1 GOL 102 B 1 HETATM 2 O O1 GOL . . . E 3 61.812 54.912 26.928 1 95.69 ? O1 GOL 102 B 1 HETATM 3 C C2 GOL . . . E 3 61.527 54.086 29.155 1 90.52 ? C2 GOL 102 B 1 HETATM 4 O O2 GOL . . . E 3 62.845 54.447 29.501 1 98.26 ? O2 GOL 102 B 1 HETATM 5 C C3 GOL . . . E 3 60.635 54.141 30.388 1 84.01 ? C3 GOL 102 B 1 HETATM 6 O O3 GOL . . . E 3 60.974 53.072 31.242 1 92.23 ? O3 GOL 102 B 1 # _model_server_stats.io_time_ms 67 _model_server_stats.parse_time_ms 16 _model_server_stats.create_model_time_ms 4 _model_server_stats.query_time_ms 336 _model_server_stats.encode_time_ms 3 _model_server_stats.element_count 6 #