data_4QM0 # _model_server_result.job_id vUcTg0YgzrJcf_Ix0kl7PA _model_server_result.datetime_utc '2024-11-28 22:30:39' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 4qm0 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"D","auth_seq_id":602}' # _entry.id 4QM0 # _exptl.entry_id 4QM0 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 78.133 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'DIMETHYL SULFOXIDE' _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 4QM0 _cell.length_a 99.051 _cell.length_b 99.051 _cell.length_c 129.666 _cell.Z_PDB 12 _cell.pdbx_unique_axis ? # _symmetry.entry_id 4QM0 _symmetry.cell_setting ? _symmetry.Int_Tables_number 169 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 61' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id ? monomeric 1 author_defined_assembly 1 ? monomeric 1 author_defined_assembly 2 PISA dimeric 2 software_defined_assembly 3 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,C,D,G 1 1 B,E,F,H 2 1 A,C,D,G 3 1 B,E,F,H 3 2 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 4_454 -x-1,-y,z-1/2 -1 0 0 0 -1 0 0 0 1 -99.051 0 -64.833 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 3 D N N ? 3 F N N # _chem_comp.formula 'C2 H6 O S' _chem_comp.formula_weight 78.133 _chem_comp.id DMS _chem_comp.mon_nstd_flag . _chem_comp.name 'DIMETHYL SULFOXIDE' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag S O DMS doub 143 n n S C1 DMS sing 144 n n S C2 DMS sing 145 n n C1 H11 DMS sing 146 n n C1 H12 DMS sing 147 n n C1 H13 DMS sing 148 n n C2 H21 DMS sing 149 n n C2 H22 DMS sing 150 n n C2 H23 DMS sing 151 n n # _atom_sites.entry_id 4QM0 _atom_sites.fract_transf_matrix[1][1] 0.010096 _atom_sites.fract_transf_matrix[1][2] 0.005829 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.011658 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.007712 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 39K A 1 601 2 39K LIG . D 3 DMS A 1 602 3 DMS DMS . E 2 39K C 1 601 1 39K LIG . F 3 DMS C 1 602 4 DMS DMS . G 4 HOH A 1 701 3 HOH HOH . G 4 HOH A 2 702 4 HOH HOH . G 4 HOH A 3 703 8 HOH HOH . G 4 HOH A 4 704 13 HOH HOH . G 4 HOH A 5 705 14 HOH HOH . G 4 HOH A 6 706 15 HOH HOH . G 4 HOH A 7 707 17 HOH HOH . G 4 HOH A 8 708 18 HOH HOH . G 4 HOH A 9 709 20 HOH HOH . G 4 HOH A 10 710 21 HOH HOH . G 4 HOH A 11 711 27 HOH HOH . G 4 HOH A 12 712 28 HOH HOH . G 4 HOH A 13 713 29 HOH HOH . G 4 HOH A 14 714 33 HOH HOH . G 4 HOH A 15 715 34 HOH HOH . G 4 HOH A 16 716 36 HOH HOH . G 4 HOH A 17 717 41 HOH HOH . G 4 HOH A 18 718 43 HOH HOH . G 4 HOH A 19 719 45 HOH HOH . G 4 HOH A 20 720 48 HOH HOH . G 4 HOH A 21 721 50 HOH HOH . G 4 HOH A 22 722 52 HOH HOH . G 4 HOH A 23 723 53 HOH HOH . G 4 HOH A 24 724 54 HOH HOH . G 4 HOH A 25 725 55 HOH HOH . G 4 HOH A 26 726 57 HOH HOH . G 4 HOH A 27 727 58 HOH HOH . G 4 HOH A 28 728 60 HOH HOH . G 4 HOH A 29 729 61 HOH HOH . G 4 HOH A 30 730 63 HOH HOH . G 4 HOH A 31 731 65 HOH HOH . G 4 HOH A 32 732 66 HOH HOH . G 4 HOH A 33 733 67 HOH HOH . G 4 HOH A 34 734 68 HOH HOH . G 4 HOH A 35 735 71 HOH HOH . G 4 HOH A 36 736 72 HOH HOH . G 4 HOH A 37 737 74 HOH HOH . G 4 HOH A 38 738 81 HOH HOH . G 4 HOH A 39 739 85 HOH HOH . G 4 HOH A 40 740 86 HOH HOH . G 4 HOH A 41 741 88 HOH HOH . G 4 HOH A 42 742 89 HOH HOH . G 4 HOH A 43 743 91 HOH HOH . G 4 HOH A 44 744 92 HOH HOH . G 4 HOH A 45 745 94 HOH HOH . G 4 HOH A 46 746 96 HOH HOH . G 4 HOH A 47 747 97 HOH HOH . G 4 HOH A 48 748 99 HOH HOH . G 4 HOH A 49 749 101 HOH HOH . G 4 HOH A 50 750 102 HOH HOH . G 4 HOH A 51 751 108 HOH HOH . G 4 HOH A 52 752 116 HOH HOH . G 4 HOH A 53 753 121 HOH HOH . G 4 HOH A 54 754 122 HOH HOH . G 4 HOH A 55 755 123 HOH HOH . G 4 HOH A 56 756 124 HOH HOH . G 4 HOH A 57 757 125 HOH HOH . G 4 HOH A 58 758 126 HOH HOH . G 4 HOH A 59 759 129 HOH HOH . G 4 HOH A 60 760 130 HOH HOH . G 4 HOH A 61 761 131 HOH HOH . G 4 HOH A 62 762 132 HOH HOH . G 4 HOH A 63 763 133 HOH HOH . G 4 HOH A 64 764 134 HOH HOH . G 4 HOH A 65 765 136 HOH HOH . G 4 HOH A 66 766 138 HOH HOH . G 4 HOH A 67 767 140 HOH HOH . G 4 HOH A 68 768 142 HOH HOH . G 4 HOH A 69 769 143 HOH HOH . G 4 HOH A 70 770 144 HOH HOH . G 4 HOH A 71 771 145 HOH HOH . G 4 HOH A 72 772 146 HOH HOH . G 4 HOH A 73 773 148 HOH HOH . G 4 HOH A 74 774 149 HOH HOH . G 4 HOH A 75 775 150 HOH HOH . G 4 HOH A 76 776 152 HOH HOH . G 4 HOH A 77 777 153 HOH HOH . G 4 HOH A 78 778 157 HOH HOH . G 4 HOH A 79 779 164 HOH HOH . G 4 HOH A 80 780 166 HOH HOH . G 4 HOH A 81 781 172 HOH HOH . G 4 HOH A 82 782 174 HOH HOH . G 4 HOH A 83 783 175 HOH HOH . G 4 HOH A 84 784 178 HOH HOH . G 4 HOH A 85 785 179 HOH HOH . G 4 HOH A 86 786 181 HOH HOH . G 4 HOH A 87 787 182 HOH HOH . G 4 HOH A 88 788 188 HOH HOH . G 4 HOH A 89 789 189 HOH HOH . G 4 HOH A 90 790 190 HOH HOH . G 4 HOH A 91 791 191 HOH HOH . G 4 HOH A 92 792 195 HOH HOH . G 4 HOH A 93 793 196 HOH HOH . G 4 HOH A 94 794 198 HOH HOH . G 4 HOH A 95 795 199 HOH HOH . G 4 HOH A 96 796 200 HOH HOH . G 4 HOH A 97 797 201 HOH HOH . G 4 HOH A 98 798 204 HOH HOH . G 4 HOH A 99 799 205 HOH HOH . G 4 HOH A 100 800 210 HOH HOH . G 4 HOH A 101 801 218 HOH HOH . G 4 HOH A 102 802 220 HOH HOH . G 4 HOH A 103 803 221 HOH HOH . G 4 HOH A 104 804 224 HOH HOH . G 4 HOH A 105 805 227 HOH HOH . G 4 HOH A 106 806 229 HOH HOH . G 4 HOH A 107 807 231 HOH HOH . G 4 HOH A 108 808 232 HOH HOH . G 4 HOH A 109 809 234 HOH HOH . G 4 HOH A 110 810 235 HOH HOH . G 4 HOH A 111 811 237 HOH HOH . G 4 HOH A 112 812 240 HOH HOH . G 4 HOH A 113 813 241 HOH HOH . G 4 HOH A 114 814 245 HOH HOH . G 4 HOH A 115 815 248 HOH HOH . G 4 HOH A 116 816 249 HOH HOH . G 4 HOH A 117 817 251 HOH HOH . G 4 HOH A 118 818 252 HOH HOH . G 4 HOH A 119 819 254 HOH HOH . G 4 HOH A 120 820 255 HOH HOH . H 4 HOH C 1 701 1 HOH HOH . H 4 HOH C 2 702 2 HOH HOH . H 4 HOH C 3 703 5 HOH HOH . H 4 HOH C 4 704 6 HOH HOH . H 4 HOH C 5 705 7 HOH HOH . H 4 HOH C 6 706 9 HOH HOH . H 4 HOH C 7 707 10 HOH HOH . H 4 HOH C 8 708 11 HOH HOH . H 4 HOH C 9 709 12 HOH HOH . H 4 HOH C 10 710 16 HOH HOH . H 4 HOH C 11 711 19 HOH HOH . H 4 HOH C 12 712 22 HOH HOH . H 4 HOH C 13 713 23 HOH HOH . H 4 HOH C 14 714 24 HOH HOH . H 4 HOH C 15 715 25 HOH HOH . H 4 HOH C 16 716 26 HOH HOH . H 4 HOH C 17 717 30 HOH HOH . H 4 HOH C 18 718 31 HOH HOH . H 4 HOH C 19 719 32 HOH HOH . H 4 HOH C 20 720 35 HOH HOH . H 4 HOH C 21 721 37 HOH HOH . H 4 HOH C 22 722 38 HOH HOH . H 4 HOH C 23 723 39 HOH HOH . H 4 HOH C 24 724 40 HOH HOH . H 4 HOH C 25 725 42 HOH HOH . H 4 HOH C 26 726 44 HOH HOH . H 4 HOH C 27 727 46 HOH HOH . H 4 HOH C 28 728 47 HOH HOH . H 4 HOH C 29 729 49 HOH HOH . H 4 HOH C 30 730 51 HOH HOH . H 4 HOH C 31 731 56 HOH HOH . H 4 HOH C 32 732 59 HOH HOH . H 4 HOH C 33 733 62 HOH HOH . H 4 HOH C 34 734 64 HOH HOH . H 4 HOH C 35 735 69 HOH HOH . H 4 HOH C 36 736 70 HOH HOH . H 4 HOH C 37 737 73 HOH HOH . H 4 HOH C 38 738 75 HOH HOH . H 4 HOH C 39 739 76 HOH HOH . H 4 HOH C 40 740 77 HOH HOH . H 4 HOH C 41 741 78 HOH HOH . H 4 HOH C 42 742 79 HOH HOH . H 4 HOH C 43 743 80 HOH HOH . H 4 HOH C 44 744 82 HOH HOH . H 4 HOH C 45 745 83 HOH HOH . H 4 HOH C 46 746 84 HOH HOH . H 4 HOH C 47 747 87 HOH HOH . H 4 HOH C 48 748 90 HOH HOH . H 4 HOH C 49 749 93 HOH HOH . H 4 HOH C 50 750 95 HOH HOH . H 4 HOH C 51 751 98 HOH HOH . H 4 HOH C 52 752 100 HOH HOH . H 4 HOH C 53 753 103 HOH HOH . H 4 HOH C 54 754 104 HOH HOH . H 4 HOH C 55 755 105 HOH HOH . H 4 HOH C 56 756 106 HOH HOH . H 4 HOH C 57 757 107 HOH HOH . H 4 HOH C 58 758 109 HOH HOH . H 4 HOH C 59 759 110 HOH HOH . H 4 HOH C 60 760 111 HOH HOH . H 4 HOH C 61 761 112 HOH HOH . H 4 HOH C 62 762 113 HOH HOH . H 4 HOH C 63 763 114 HOH HOH . H 4 HOH C 64 764 115 HOH HOH . H 4 HOH C 65 765 117 HOH HOH . H 4 HOH C 66 766 118 HOH HOH . H 4 HOH C 67 767 119 HOH HOH . H 4 HOH C 68 768 120 HOH HOH . H 4 HOH C 69 769 127 HOH HOH . H 4 HOH C 70 770 128 HOH HOH . H 4 HOH C 71 771 135 HOH HOH . H 4 HOH C 72 772 137 HOH HOH . H 4 HOH C 73 773 139 HOH HOH . H 4 HOH C 74 774 141 HOH HOH . H 4 HOH C 75 775 147 HOH HOH . H 4 HOH C 76 776 151 HOH HOH . H 4 HOH C 77 777 154 HOH HOH . H 4 HOH C 78 778 155 HOH HOH . H 4 HOH C 79 779 156 HOH HOH . H 4 HOH C 80 780 158 HOH HOH . H 4 HOH C 81 781 159 HOH HOH . H 4 HOH C 82 782 160 HOH HOH . H 4 HOH C 83 783 161 HOH HOH . H 4 HOH C 84 784 162 HOH HOH . H 4 HOH C 85 785 163 HOH HOH . H 4 HOH C 86 786 165 HOH HOH . H 4 HOH C 87 787 167 HOH HOH . H 4 HOH C 88 788 168 HOH HOH . H 4 HOH C 89 789 169 HOH HOH . H 4 HOH C 90 790 170 HOH HOH . H 4 HOH C 91 791 171 HOH HOH . H 4 HOH C 92 792 173 HOH HOH . H 4 HOH C 93 793 176 HOH HOH . H 4 HOH C 94 794 177 HOH HOH . H 4 HOH C 95 795 180 HOH HOH . H 4 HOH C 96 796 183 HOH HOH . H 4 HOH C 97 797 184 HOH HOH . H 4 HOH C 98 798 185 HOH HOH . H 4 HOH C 99 799 186 HOH HOH . H 4 HOH C 100 800 187 HOH HOH . H 4 HOH C 101 801 192 HOH HOH . H 4 HOH C 102 802 193 HOH HOH . H 4 HOH C 103 803 194 HOH HOH . H 4 HOH C 104 804 197 HOH HOH . H 4 HOH C 105 805 202 HOH HOH . H 4 HOH C 106 806 203 HOH HOH . H 4 HOH C 107 807 206 HOH HOH . H 4 HOH C 108 808 207 HOH HOH . H 4 HOH C 109 809 208 HOH HOH . H 4 HOH C 110 810 209 HOH HOH . H 4 HOH C 111 811 211 HOH HOH . H 4 HOH C 112 812 212 HOH HOH . H 4 HOH C 113 813 213 HOH HOH . H 4 HOH C 114 814 214 HOH HOH . H 4 HOH C 115 815 215 HOH HOH . H 4 HOH C 116 816 216 HOH HOH . H 4 HOH C 117 817 217 HOH HOH . H 4 HOH C 118 818 219 HOH HOH . H 4 HOH C 119 819 222 HOH HOH . H 4 HOH C 120 820 223 HOH HOH . H 4 HOH C 121 821 225 HOH HOH . H 4 HOH C 122 822 226 HOH HOH . H 4 HOH C 123 823 228 HOH HOH . H 4 HOH C 124 824 230 HOH HOH . H 4 HOH C 125 825 233 HOH HOH . H 4 HOH C 126 826 236 HOH HOH . H 4 HOH C 127 827 238 HOH HOH . H 4 HOH C 128 828 239 HOH HOH . H 4 HOH C 129 829 242 HOH HOH . H 4 HOH C 130 830 243 HOH HOH . H 4 HOH C 131 831 244 HOH HOH . H 4 HOH C 132 832 246 HOH HOH . H 4 HOH C 133 833 247 HOH HOH . H 4 HOH C 134 834 250 HOH HOH . H 4 HOH C 135 835 253 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 S S DMS . . . D 3 -26.192 -3.504 7.791 1 105.65 ? S DMS 602 A 1 HETATM 2 O O DMS . . . D 3 -24.963 -3.975 8.502 1 103.13 ? O DMS 602 A 1 HETATM 3 C C1 DMS . . . D 3 -26.268 -1.689 7.796 1 45.6 ? C1 DMS 602 A 1 HETATM 4 C C2 DMS . . . D 3 -25.974 -3.766 6.014 1 37.7 ? C2 DMS 602 A 1 # _model_server_stats.io_time_ms 15 _model_server_stats.parse_time_ms 9 _model_server_stats.create_model_time_ms 13 _model_server_stats.query_time_ms 271 _model_server_stats.encode_time_ms 4 _model_server_stats.element_count 4 #