data_4QM1 # _model_server_result.job_id PLOBe0kL5a2y6yPUjol-NA _model_server_result.datetime_utc '2024-11-29 05:00:57' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 4qm1 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"L","auth_seq_id":500}' # _entry.id 4QM1 # _exptl.entry_id 4QM1 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 348.206 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'INOSINIC ACID' _entity.pdbx_number_of_molecules 4 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 109.57 _cell.angle_gamma 90 _cell.entry_id 4QM1 _cell.length_a 83.13 _cell.length_b 101.331 _cell.length_c 87.267 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 4QM1 _symmetry.cell_setting ? _symmetry.Int_Tables_number 4 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1 21 1' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details tetrameric _pdbx_struct_assembly.oligomeric_count 4 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 E N N ? 2 G N N ? 2 K N N ? 2 L N N # _chem_comp.formula 'C10 H13 N4 O8 P' _chem_comp.formula_weight 348.206 _chem_comp.id IMP _chem_comp.mon_nstd_flag n _chem_comp.name 'INOSINIC ACID' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag P O1P IMP doub 227 n n P O2P IMP sing 228 n n P O3P IMP sing 229 n n P O5' IMP sing 230 n n O2P HOP2 IMP sing 231 n n O3P HOP3 IMP sing 232 n n O5' C5' IMP sing 233 n n C5' C4' IMP sing 234 n n C5' "H5'1" IMP sing 235 n n C5' "H5'2" IMP sing 236 n n C4' O4' IMP sing 237 n n C4' C3' IMP sing 238 n n C4' H4' IMP sing 239 n n O4' C1' IMP sing 240 n n C3' O3' IMP sing 241 n n C3' C2' IMP sing 242 n n C3' H3' IMP sing 243 n n O3' HO3' IMP sing 244 n n C2' O2' IMP sing 245 n n C2' C1' IMP sing 246 n n C2' H2' IMP sing 247 n n O2' HO2' IMP sing 248 n n C1' N9 IMP sing 249 n n C1' H1' IMP sing 250 n n N9 C8 IMP sing 251 n y N9 C4 IMP sing 252 n y C8 N7 IMP doub 253 n y C8 H8 IMP sing 254 n n N7 C5 IMP sing 255 n y C5 C6 IMP sing 256 n n C5 C4 IMP doub 257 n y C6 O6 IMP doub 258 n n C6 N1 IMP sing 259 n n N1 C2 IMP sing 260 n n N1 HN1 IMP sing 261 n n C2 N3 IMP doub 262 n n C2 H2 IMP sing 263 n n N3 C4 IMP sing 264 n n # _atom_sites.entry_id 4QM1 _atom_sites.fract_transf_matrix[1][1] 0.012029 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.004276 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.009869 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.012162 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code E 2 IMP A 1 500 500 IMP IMP . F 3 39H A 1 501 501 39H 39H . G 2 IMP B 1 500 500 IMP IMP . H 3 39H B 1 501 501 39H 39H . I 3 39H C 1 501 501 39H 39H . J 3 39H C 1 503 501 39H 39H . K 2 IMP C 1 502 500 IMP IMP . L 2 IMP D 1 500 500 IMP IMP . M 4 HOH A 1 601 5 HOH HOH . M 4 HOH A 2 602 6 HOH HOH . M 4 HOH A 3 603 7 HOH HOH . M 4 HOH A 4 604 10 HOH HOH . M 4 HOH A 5 605 13 HOH HOH . N 4 HOH B 1 601 3 HOH HOH . N 4 HOH B 2 602 4 HOH HOH . N 4 HOH B 3 603 12 HOH HOH . N 4 HOH B 4 604 16 HOH HOH . O 4 HOH C 1 601 1 HOH HOH . O 4 HOH C 2 602 9 HOH HOH . O 4 HOH C 3 603 11 HOH HOH . O 4 HOH C 4 604 14 HOH HOH . P 4 HOH D 1 601 2 HOH HOH . P 4 HOH D 2 602 8 HOH HOH . P 4 HOH D 3 603 15 HOH HOH . P 4 HOH D 4 604 17 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 P P IMP . . . L 2 37.078 12.448 -10.615 1 48.24 ? P IMP 500 D 1 HETATM 2 O O1P IMP . . . L 2 38.47 12.442 -10.016 1 48.07 ? O1P IMP 500 D 1 HETATM 3 O O2P IMP . . . L 2 36.477 13.783 -10.975 1 49.51 ? O2P IMP 500 D 1 HETATM 4 O O3P IMP . . . L 2 36.105 11.718 -9.695 1 48.61 ? O3P IMP 500 D 1 HETATM 5 O O5' IMP . . . L 2 37.146 11.617 -11.966 1 60.29 ? O5' IMP 500 D 1 HETATM 6 C C5' IMP . . . L 2 38.105 11.945 -12.952 1 60.08 ? C5' IMP 500 D 1 HETATM 7 C C4' IMP . . . L 2 38.591 10.719 -13.672 1 60.17 ? C4' IMP 500 D 1 HETATM 8 O O4' IMP . . . L 2 37.546 10.197 -14.522 1 60.28 ? O4' IMP 500 D 1 HETATM 9 C C3' IMP . . . L 2 39.779 10.949 -14.58 1 60.06 ? C3' IMP 500 D 1 HETATM 10 O O3' IMP . . . L 2 40.98 10.777 -13.837 1 60.57 ? O3' IMP 500 D 1 HETATM 11 C C2' IMP . . . L 2 39.627 9.85 -15.63 1 59.23 ? C2' IMP 500 D 1 HETATM 12 O O2' IMP . . . L 2 40.274 8.639 -15.314 1 60.13 ? O2' IMP 500 D 1 HETATM 13 C C1' IMP . . . L 2 38.109 9.649 -15.705 1 59.67 ? C1' IMP 500 D 1 HETATM 14 N N9 IMP . . . L 2 37.494 10.306 -16.857 1 61.37 ? N9 IMP 500 D 1 HETATM 15 C C8 IMP . . . L 2 37.879 11.477 -17.47 1 60.93 ? C8 IMP 500 D 1 HETATM 16 N N7 IMP . . . L 2 37.029 11.724 -18.498 1 61 ? N7 IMP 500 D 1 HETATM 17 C C5 IMP . . . L 2 36.104 10.73 -18.54 1 62.54 ? C5 IMP 500 D 1 HETATM 18 C C6 IMP . . . L 2 35.013 10.487 -19.372 1 63.24 ? C6 IMP 500 D 1 HETATM 19 O O6 IMP . . . L 2 34.885 11.121 -20.418 1 63.45 ? O6 IMP 500 D 1 HETATM 20 N N1 IMP . . . L 2 34.229 9.368 -19.152 1 62.5 ? N1 IMP 500 D 1 HETATM 21 C C2 IMP . . . L 2 34.534 8.499 -18.124 1 61.36 ? C2 IMP 500 D 1 HETATM 22 N N3 IMP . . . L 2 35.62 8.735 -17.308 1 60.66 ? N3 IMP 500 D 1 HETATM 23 C C4 IMP . . . L 2 36.387 9.834 -17.512 1 61.97 ? C4 IMP 500 D 1 # _model_server_stats.io_time_ms 22 _model_server_stats.parse_time_ms 11 _model_server_stats.create_model_time_ms 17 _model_server_stats.query_time_ms 286 _model_server_stats.encode_time_ms 5 _model_server_stats.element_count 23 #