data_4QMA # _model_server_result.job_id E25t9YNJREoKsoS0lVCj2g _model_server_result.datetime_utc '2024-10-12 14:31:02' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 4qma # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"K","auth_seq_id":310}' # _entry.id 4QMA # _exptl.entry_id 4QMA _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 62.068 _entity.id 5 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 1,2-ETHANEDIOL _entity.pdbx_number_of_molecules 9 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 4QMA _cell.length_a 57.007 _cell.length_b 57.007 _cell.length_c 216.683 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 4QMA _symmetry.cell_setting ? _symmetry.Int_Tables_number 92 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 41 21 2' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M,N,O _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 5 F N N ? 5 G N N ? 5 H N N ? 5 I N N ? 5 J N N ? 5 K N N ? 5 L N N ? 5 M N N ? 5 N N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order covale ? covale1 A C GLN 68 A GLN 67 1_555 A N MSE 69 A MSE 68 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.32 ? covale ? covale2 A C MSE 69 A MSE 68 1_555 A N LEU 70 A LEU 69 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.328 ? covale ? covale3 A C GLY 104 A GLY 103 1_555 A N MSE 105 A MSE 104 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.327 ? covale ? covale4 A C MSE 105 A MSE 104 1_555 A N LEU 106 A LEU 105 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.322 ? metalc ? metalc1 A NE2 HIS 95 A HIS 94 1_555 B FE FE . A FE 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.132 ? metalc ? metalc2 A NE2 HIS 97 A HIS 96 1_555 B FE FE . A FE 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.078 ? metalc ? metalc3 A NE2 HIS 148 A HIS 147 1_555 B FE FE . A FE 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.161 ? metalc ? metalc4 B FE FE . A FE 301 1_555 C O1 OXY . A OXY 302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.338 ? metalc ? metalc5 B FE FE . A FE 301 1_555 O O HOH . A HOH 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.338 ? metalc ? metalc6 B FE FE . A FE 301 1_555 O O HOH . A HOH 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.111 ? # _chem_comp.formula 'C2 H6 O2' _chem_comp.formula_weight 62.068 _chem_comp.id EDO _chem_comp.mon_nstd_flag . _chem_comp.name 1,2-ETHANEDIOL _chem_comp.type non-polymer _chem_comp.pdbx_synonyms 'ETHYLENE GLYCOL' # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 O1 EDO sing 83 n n C1 C2 EDO sing 84 n n C1 H11 EDO sing 85 n n C1 H12 EDO sing 86 n n O1 HO1 EDO sing 87 n n C2 O2 EDO sing 88 n n C2 H21 EDO sing 89 n n C2 H22 EDO sing 90 n n O2 HO2 EDO sing 91 n n # _atom_sites.entry_id 4QMA _atom_sites.fract_transf_matrix[1][1] 0.017542 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.017542 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.004615 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 FE A 1 301 500 FE FE . C 3 OXY A 1 302 503 OXY OXY . D 4 SO4 A 1 303 2 SO4 SO4 . E 4 SO4 A 1 304 3 SO4 SO4 . F 5 EDO A 1 305 241 EDO EDO . G 5 EDO A 1 306 242 EDO EDO . H 5 EDO A 1 307 243 EDO EDO . I 5 EDO A 1 308 244 EDO EDO . J 5 EDO A 1 309 245 EDO EDO . K 5 EDO A 1 310 246 EDO EDO . L 5 EDO A 1 311 247 EDO EDO . M 5 EDO A 1 312 248 EDO EDO . N 5 EDO A 1 313 250 EDO EDO . O 6 HOH A 1 501 501 HOH HOH . O 6 HOH A 2 502 502 HOH HOH . O 6 HOH A 3 503 7 HOH HOH . O 6 HOH A 4 504 8 HOH HOH . O 6 HOH A 5 505 10 HOH HOH . O 6 HOH A 6 506 12 HOH HOH . O 6 HOH A 7 507 15 HOH HOH . O 6 HOH A 8 508 18 HOH HOH . O 6 HOH A 9 509 20 HOH HOH . O 6 HOH A 10 510 22 HOH HOH . O 6 HOH A 11 511 24 HOH HOH . O 6 HOH A 12 512 27 HOH HOH . O 6 HOH A 13 513 28 HOH HOH . O 6 HOH A 14 514 29 HOH HOH . O 6 HOH A 15 515 30 HOH HOH . O 6 HOH A 16 516 31 HOH HOH . O 6 HOH A 17 517 32 HOH HOH . O 6 HOH A 18 518 34 HOH HOH . O 6 HOH A 19 519 35 HOH HOH . O 6 HOH A 20 520 36 HOH HOH . O 6 HOH A 21 521 37 HOH HOH . O 6 HOH A 22 522 38 HOH HOH . O 6 HOH A 23 523 40 HOH HOH . O 6 HOH A 24 524 41 HOH HOH . O 6 HOH A 25 525 42 HOH HOH . O 6 HOH A 26 526 43 HOH HOH . O 6 HOH A 27 527 44 HOH HOH . O 6 HOH A 28 528 45 HOH HOH . O 6 HOH A 29 529 46 HOH HOH . O 6 HOH A 30 530 47 HOH HOH . O 6 HOH A 31 531 48 HOH HOH . O 6 HOH A 32 532 49 HOH HOH . O 6 HOH A 33 533 50 HOH HOH . O 6 HOH A 34 534 51 HOH HOH . O 6 HOH A 35 535 52 HOH HOH . O 6 HOH A 36 536 53 HOH HOH . O 6 HOH A 37 537 54 HOH HOH . O 6 HOH A 38 538 55 HOH HOH . O 6 HOH A 39 539 56 HOH HOH . O 6 HOH A 40 540 57 HOH HOH . O 6 HOH A 41 541 59 HOH HOH . O 6 HOH A 42 542 61 HOH HOH . O 6 HOH A 43 543 62 HOH HOH . O 6 HOH A 44 544 63 HOH HOH . O 6 HOH A 45 545 64 HOH HOH . O 6 HOH A 46 546 65 HOH HOH . O 6 HOH A 47 547 66 HOH HOH . O 6 HOH A 48 548 67 HOH HOH . O 6 HOH A 49 549 68 HOH HOH . O 6 HOH A 50 550 69 HOH HOH . O 6 HOH A 51 551 70 HOH HOH . O 6 HOH A 52 552 72 HOH HOH . O 6 HOH A 53 553 73 HOH HOH . O 6 HOH A 54 554 74 HOH HOH . O 6 HOH A 55 555 75 HOH HOH . O 6 HOH A 56 556 76 HOH HOH . O 6 HOH A 57 557 77 HOH HOH . O 6 HOH A 58 558 78 HOH HOH . O 6 HOH A 59 559 79 HOH HOH . O 6 HOH A 60 560 80 HOH HOH . O 6 HOH A 61 561 81 HOH HOH . O 6 HOH A 62 562 82 HOH HOH . O 6 HOH A 63 563 83 HOH HOH . O 6 HOH A 64 564 84 HOH HOH . O 6 HOH A 65 565 85 HOH HOH . O 6 HOH A 66 566 86 HOH HOH . O 6 HOH A 67 567 87 HOH HOH . O 6 HOH A 68 568 89 HOH HOH . O 6 HOH A 69 569 90 HOH HOH . O 6 HOH A 70 570 91 HOH HOH . O 6 HOH A 71 571 92 HOH HOH . O 6 HOH A 72 572 93 HOH HOH . O 6 HOH A 73 573 95 HOH HOH . O 6 HOH A 74 574 96 HOH HOH . O 6 HOH A 75 575 97 HOH HOH . O 6 HOH A 76 576 98 HOH HOH . O 6 HOH A 77 577 99 HOH HOH . O 6 HOH A 78 578 100 HOH HOH . O 6 HOH A 79 579 101 HOH HOH . O 6 HOH A 80 580 102 HOH HOH . O 6 HOH A 81 581 103 HOH HOH . O 6 HOH A 82 582 104 HOH HOH . O 6 HOH A 83 583 105 HOH HOH . O 6 HOH A 84 584 106 HOH HOH . O 6 HOH A 85 585 107 HOH HOH . O 6 HOH A 86 586 109 HOH HOH . O 6 HOH A 87 587 110 HOH HOH . O 6 HOH A 88 588 111 HOH HOH . O 6 HOH A 89 589 112 HOH HOH . O 6 HOH A 90 590 113 HOH HOH . O 6 HOH A 91 591 114 HOH HOH . O 6 HOH A 92 592 115 HOH HOH . O 6 HOH A 93 593 116 HOH HOH . O 6 HOH A 94 594 117 HOH HOH . O 6 HOH A 95 595 118 HOH HOH . O 6 HOH A 96 596 119 HOH HOH . O 6 HOH A 97 597 120 HOH HOH . O 6 HOH A 98 598 121 HOH HOH . O 6 HOH A 99 599 122 HOH HOH . O 6 HOH A 100 600 123 HOH HOH . O 6 HOH A 101 601 124 HOH HOH . O 6 HOH A 102 602 125 HOH HOH . O 6 HOH A 103 603 126 HOH HOH . O 6 HOH A 104 604 127 HOH HOH . O 6 HOH A 105 605 128 HOH HOH . O 6 HOH A 106 606 129 HOH HOH . O 6 HOH A 107 607 130 HOH HOH . O 6 HOH A 108 608 131 HOH HOH . O 6 HOH A 109 609 132 HOH HOH . O 6 HOH A 110 610 133 HOH HOH . O 6 HOH A 111 611 134 HOH HOH . O 6 HOH A 112 612 135 HOH HOH . O 6 HOH A 113 613 136 HOH HOH . O 6 HOH A 114 614 137 HOH HOH . O 6 HOH A 115 615 138 HOH HOH . O 6 HOH A 116 616 139 HOH HOH . O 6 HOH A 117 617 140 HOH HOH . O 6 HOH A 118 618 141 HOH HOH . O 6 HOH A 119 619 142 HOH HOH . O 6 HOH A 120 620 143 HOH HOH . O 6 HOH A 121 621 144 HOH HOH . O 6 HOH A 122 622 145 HOH HOH . O 6 HOH A 123 623 146 HOH HOH . O 6 HOH A 124 624 147 HOH HOH . O 6 HOH A 125 625 149 HOH HOH . O 6 HOH A 126 626 150 HOH HOH . O 6 HOH A 127 627 151 HOH HOH . O 6 HOH A 128 628 152 HOH HOH . O 6 HOH A 129 629 153 HOH HOH . O 6 HOH A 130 630 154 HOH HOH . O 6 HOH A 131 631 156 HOH HOH . O 6 HOH A 132 632 157 HOH HOH . O 6 HOH A 133 633 158 HOH HOH . O 6 HOH A 134 634 159 HOH HOH . O 6 HOH A 135 635 161 HOH HOH . O 6 HOH A 136 636 162 HOH HOH . O 6 HOH A 137 637 163 HOH HOH . O 6 HOH A 138 638 164 HOH HOH . O 6 HOH A 139 639 165 HOH HOH . O 6 HOH A 140 640 166 HOH HOH . O 6 HOH A 141 641 167 HOH HOH . O 6 HOH A 142 642 168 HOH HOH . O 6 HOH A 143 643 169 HOH HOH . O 6 HOH A 144 644 170 HOH HOH . O 6 HOH A 145 645 171 HOH HOH . O 6 HOH A 146 646 172 HOH HOH . O 6 HOH A 147 647 173 HOH HOH . O 6 HOH A 148 648 174 HOH HOH . O 6 HOH A 149 649 175 HOH HOH . O 6 HOH A 150 650 176 HOH HOH . O 6 HOH A 151 651 177 HOH HOH . O 6 HOH A 152 652 178 HOH HOH . O 6 HOH A 153 653 179 HOH HOH . O 6 HOH A 154 654 180 HOH HOH . O 6 HOH A 155 655 181 HOH HOH . O 6 HOH A 156 656 182 HOH HOH . O 6 HOH A 157 657 183 HOH HOH . O 6 HOH A 158 658 184 HOH HOH . O 6 HOH A 159 659 185 HOH HOH . O 6 HOH A 160 660 186 HOH HOH . O 6 HOH A 161 661 187 HOH HOH . O 6 HOH A 162 662 190 HOH HOH . O 6 HOH A 163 663 191 HOH HOH . O 6 HOH A 164 664 192 HOH HOH . O 6 HOH A 165 665 194 HOH HOH . O 6 HOH A 166 666 195 HOH HOH . O 6 HOH A 167 667 196 HOH HOH . O 6 HOH A 168 668 197 HOH HOH . O 6 HOH A 169 669 198 HOH HOH . O 6 HOH A 170 670 199 HOH HOH . O 6 HOH A 171 671 201 HOH HOH . O 6 HOH A 172 672 202 HOH HOH . O 6 HOH A 173 673 203 HOH HOH . O 6 HOH A 174 674 204 HOH HOH . O 6 HOH A 175 675 205 HOH HOH . O 6 HOH A 176 676 206 HOH HOH . O 6 HOH A 177 677 207 HOH HOH . O 6 HOH A 178 678 208 HOH HOH . O 6 HOH A 179 679 209 HOH HOH . O 6 HOH A 180 680 210 HOH HOH . O 6 HOH A 181 681 211 HOH HOH . O 6 HOH A 182 682 213 HOH HOH . O 6 HOH A 183 683 217 HOH HOH . O 6 HOH A 184 684 218 HOH HOH . O 6 HOH A 185 685 219 HOH HOH . O 6 HOH A 186 686 220 HOH HOH . O 6 HOH A 187 687 221 HOH HOH . O 6 HOH A 188 688 222 HOH HOH . O 6 HOH A 189 689 223 HOH HOH . O 6 HOH A 190 690 224 HOH HOH . O 6 HOH A 191 691 225 HOH HOH . O 6 HOH A 192 692 226 HOH HOH . O 6 HOH A 193 693 227 HOH HOH . O 6 HOH A 194 694 229 HOH HOH . O 6 HOH A 195 695 232 HOH HOH . O 6 HOH A 196 696 236 HOH HOH . O 6 HOH A 197 697 237 HOH HOH . O 6 HOH A 198 698 238 HOH HOH . O 6 HOH A 199 699 239 HOH HOH . O 6 HOH A 200 700 240 HOH HOH . O 6 HOH A 201 701 251 HOH HOH . O 6 HOH A 202 702 252 HOH HOH . O 6 HOH A 203 703 253 HOH HOH . O 6 HOH A 204 704 254 HOH HOH . O 6 HOH A 205 705 255 HOH HOH . O 6 HOH A 206 706 256 HOH HOH . O 6 HOH A 207 707 257 HOH HOH . O 6 HOH A 208 708 258 HOH HOH . O 6 HOH A 209 709 259 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 EDO . B . K 5 50.594 4.105 35.439 0.5 47.29 ? C1 EDO 310 A 1 HETATM 2 O O1 EDO . B . K 5 50.994 3.846 34.104 0.5 48.93 ? O1 EDO 310 A 1 HETATM 3 C C2 EDO . B . K 5 51.008 5.505 35.876 0.5 42.66 ? C2 EDO 310 A 1 HETATM 4 O O2 EDO . B . K 5 50.024 6.495 35.517 0.5 34.42 ? O2 EDO 310 A 1 # _model_server_stats.io_time_ms 0 _model_server_stats.parse_time_ms 10 _model_server_stats.create_model_time_ms 2 _model_server_stats.query_time_ms 315 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 4 #