data_4QMQ # _model_server_result.job_id zeoUwMoUDgfaLekU712cog _model_server_result.datetime_utc '2024-12-10 15:47:56' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 4qmq # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"B","auth_seq_id":401}' # _entry.id 4QMQ # _exptl.entry_id 4QMQ _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 417.503 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 1-{2-[5-(2-methoxyethoxy)-1H-benzimidazol-1-yl]quinolin-8-yl}piperidin-4-amine _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 93.21 _cell.angle_gamma 90 _cell.entry_id 4QMQ _cell.length_a 99.475 _cell.length_b 58.361 _cell.length_c 61.717 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 4QMQ _symmetry.cell_setting ? _symmetry.Int_Tables_number 5 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'C 1 2 1' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id B _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order covale ? covale1 A C ASN 184 A ASN 177 1_555 A N TPO 185 A TPO 178 1_555 ? A ? ? ? ? ? ? ? ? ? ? 1.329 ? covale ? covale2 A C ASN 184 A ASN 177 1_555 A N TPO 185 A TPO 178 1_555 ? B ? ? ? ? ? ? ? ? ? ? 1.331 ? covale ? covale3 A C TPO 185 A TPO 178 1_555 A N PHE 186 A PHE 179 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.33 ? # _chem_comp.formula 'C24 H27 N5 O2' _chem_comp.formula_weight 417.503 _chem_comp.id 34U _chem_comp.mon_nstd_flag . _chem_comp.name 1-{2-[5-(2-methoxyethoxy)-1H-benzimidazol-1-yl]quinolin-8-yl}piperidin-4-amine _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C01 O02 34U sing 1 n n O02 C03 34U sing 2 n n C03 C04 34U sing 3 n n C04 O05 34U sing 4 n n O05 C06 34U sing 5 n n C07 C06 34U doub 6 n y C07 C08 34U sing 7 n y C06 C11 34U sing 8 n y N14 C08 34U sing 9 n y N14 C13 34U doub 10 n y C08 C09 34U doub 11 n y C13 N12 34U sing 12 n y C11 C10 34U doub 13 n y C09 N12 34U sing 14 n y C09 C10 34U sing 15 n y N12 C15 34U sing 16 n n N29 C26 34U sing 17 n n C25 C26 34U sing 18 n n C25 C24 34U sing 19 n n C15 C31 34U doub 20 n y C15 N16 34U sing 21 n y C31 C30 34U sing 22 n y C26 C27 34U sing 23 n n C24 N23 34U sing 24 n n N16 C17 34U doub 25 n y C30 C18 34U doub 26 n y N23 C22 34U sing 27 n n N23 C28 34U sing 28 n n C27 C28 34U sing 29 n n C17 C18 34U sing 30 n y C17 C22 34U sing 31 n y C18 C19 34U sing 32 n y C22 C21 34U doub 33 n y C19 C20 34U doub 34 n y C21 C20 34U sing 35 n y C01 H1 34U sing 36 n n C01 H2 34U sing 37 n n C01 H3 34U sing 38 n n C03 H4 34U sing 39 n n C03 H5 34U sing 40 n n C04 H6 34U sing 41 n n C04 H7 34U sing 42 n n C07 H8 34U sing 43 n n C10 H9 34U sing 44 n n C11 H10 34U sing 45 n n C13 H11 34U sing 46 n n C19 H12 34U sing 47 n n C20 H13 34U sing 48 n n C21 H14 34U sing 49 n n C24 H15 34U sing 50 n n C24 H16 34U sing 51 n n C25 H17 34U sing 52 n n C25 H18 34U sing 53 n n C26 H19 34U sing 54 n n C27 H20 34U sing 55 n n C27 H21 34U sing 56 n n C28 H22 34U sing 57 n n C28 H23 34U sing 58 n n N29 H24 34U sing 59 n n N29 H25 34U sing 60 n n C30 H27 34U sing 61 n n C31 H28 34U sing 62 n n # _atom_sites.entry_id 4QMQ _atom_sites.fract_transf_matrix[1][1] 0.010053 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.000565 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.017135 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.016229 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 34U A 1 401 1 34U LIG . C 3 EDO A 1 402 1 EDO EDO . D 4 PEG A 1 403 1 PEG PEG . E 5 HOH A 1 501 1 HOH HOH . E 5 HOH A 2 502 2 HOH HOH . E 5 HOH A 3 503 3 HOH HOH . E 5 HOH A 4 504 4 HOH HOH . E 5 HOH A 5 505 5 HOH HOH . E 5 HOH A 6 506 6 HOH HOH . E 5 HOH A 7 507 7 HOH HOH . E 5 HOH A 8 508 8 HOH HOH . E 5 HOH A 9 509 9 HOH HOH . E 5 HOH A 10 510 10 HOH HOH . E 5 HOH A 11 511 11 HOH HOH . E 5 HOH A 12 512 12 HOH HOH . E 5 HOH A 13 513 13 HOH HOH . E 5 HOH A 14 514 14 HOH HOH . E 5 HOH A 15 515 15 HOH HOH . E 5 HOH A 16 516 16 HOH HOH . E 5 HOH A 17 517 17 HOH HOH . E 5 HOH A 18 518 18 HOH HOH . E 5 HOH A 19 519 19 HOH HOH . E 5 HOH A 20 520 20 HOH HOH . E 5 HOH A 21 521 21 HOH HOH . E 5 HOH A 22 522 22 HOH HOH . E 5 HOH A 23 523 23 HOH HOH . E 5 HOH A 24 524 24 HOH HOH . E 5 HOH A 25 525 25 HOH HOH . E 5 HOH A 26 526 26 HOH HOH . E 5 HOH A 27 527 27 HOH HOH . E 5 HOH A 28 528 28 HOH HOH . E 5 HOH A 29 529 29 HOH HOH . E 5 HOH A 30 530 30 HOH HOH . E 5 HOH A 31 531 31 HOH HOH . E 5 HOH A 32 532 32 HOH HOH . E 5 HOH A 33 533 33 HOH HOH . E 5 HOH A 34 534 34 HOH HOH . E 5 HOH A 35 535 35 HOH HOH . E 5 HOH A 36 536 36 HOH HOH . E 5 HOH A 37 537 37 HOH HOH . E 5 HOH A 38 538 38 HOH HOH . E 5 HOH A 39 539 39 HOH HOH . E 5 HOH A 40 540 40 HOH HOH . E 5 HOH A 41 541 41 HOH HOH . E 5 HOH A 42 542 42 HOH HOH . E 5 HOH A 43 543 43 HOH HOH . E 5 HOH A 44 544 44 HOH HOH . E 5 HOH A 45 545 45 HOH HOH . E 5 HOH A 46 546 46 HOH HOH . E 5 HOH A 47 547 47 HOH HOH . E 5 HOH A 48 548 48 HOH HOH . E 5 HOH A 49 549 49 HOH HOH . E 5 HOH A 50 550 50 HOH HOH . E 5 HOH A 51 551 51 HOH HOH . E 5 HOH A 52 552 52 HOH HOH . E 5 HOH A 53 553 53 HOH HOH . E 5 HOH A 54 554 54 HOH HOH . E 5 HOH A 55 555 55 HOH HOH . E 5 HOH A 56 556 56 HOH HOH . E 5 HOH A 57 557 57 HOH HOH . E 5 HOH A 58 558 58 HOH HOH . E 5 HOH A 59 559 59 HOH HOH . E 5 HOH A 60 560 60 HOH HOH . E 5 HOH A 61 561 61 HOH HOH . E 5 HOH A 62 562 62 HOH HOH . E 5 HOH A 63 563 63 HOH HOH . E 5 HOH A 64 564 64 HOH HOH . E 5 HOH A 65 565 65 HOH HOH . E 5 HOH A 66 566 66 HOH HOH . E 5 HOH A 67 567 67 HOH HOH . E 5 HOH A 68 568 68 HOH HOH . E 5 HOH A 69 569 69 HOH HOH . E 5 HOH A 70 570 70 HOH HOH . E 5 HOH A 71 571 71 HOH HOH . E 5 HOH A 72 572 72 HOH HOH . E 5 HOH A 73 573 73 HOH HOH . E 5 HOH A 74 574 74 HOH HOH . E 5 HOH A 75 575 75 HOH HOH . E 5 HOH A 76 576 76 HOH HOH . E 5 HOH A 77 577 77 HOH HOH . E 5 HOH A 78 578 78 HOH HOH . E 5 HOH A 79 579 79 HOH HOH . E 5 HOH A 80 580 80 HOH HOH . E 5 HOH A 81 581 81 HOH HOH . E 5 HOH A 82 582 82 HOH HOH . E 5 HOH A 83 583 83 HOH HOH . E 5 HOH A 84 584 84 HOH HOH . E 5 HOH A 85 585 85 HOH HOH . E 5 HOH A 86 586 86 HOH HOH . E 5 HOH A 87 587 87 HOH HOH . E 5 HOH A 88 588 88 HOH HOH . E 5 HOH A 89 589 89 HOH HOH . E 5 HOH A 90 590 90 HOH HOH . E 5 HOH A 91 591 91 HOH HOH . E 5 HOH A 92 592 92 HOH HOH . E 5 HOH A 93 593 93 HOH HOH . E 5 HOH A 94 594 94 HOH HOH . E 5 HOH A 95 595 95 HOH HOH . E 5 HOH A 96 596 96 HOH HOH . E 5 HOH A 97 597 97 HOH HOH . E 5 HOH A 98 598 98 HOH HOH . E 5 HOH A 99 599 99 HOH HOH . E 5 HOH A 100 600 100 HOH HOH . E 5 HOH A 101 601 101 HOH HOH . E 5 HOH A 102 602 102 HOH HOH . E 5 HOH A 103 603 103 HOH HOH . E 5 HOH A 104 604 104 HOH HOH . E 5 HOH A 105 605 105 HOH HOH . E 5 HOH A 106 606 106 HOH HOH . E 5 HOH A 107 607 107 HOH HOH . E 5 HOH A 108 608 108 HOH HOH . E 5 HOH A 109 609 109 HOH HOH . E 5 HOH A 110 610 110 HOH HOH . E 5 HOH A 111 611 111 HOH HOH . E 5 HOH A 112 612 112 HOH HOH . E 5 HOH A 113 613 113 HOH HOH . E 5 HOH A 114 614 114 HOH HOH . E 5 HOH A 115 615 115 HOH HOH . E 5 HOH A 116 616 116 HOH HOH . E 5 HOH A 117 617 117 HOH HOH . E 5 HOH A 118 618 118 HOH HOH . E 5 HOH A 119 619 119 HOH HOH . E 5 HOH A 120 620 120 HOH HOH . E 5 HOH A 121 621 121 HOH HOH . E 5 HOH A 122 622 122 HOH HOH . E 5 HOH A 123 623 123 HOH HOH . E 5 HOH A 124 624 124 HOH HOH . E 5 HOH A 125 625 125 HOH HOH . E 5 HOH A 126 626 126 HOH HOH . E 5 HOH A 127 627 127 HOH HOH . E 5 HOH A 128 628 128 HOH HOH . E 5 HOH A 129 629 129 HOH HOH . E 5 HOH A 130 630 130 HOH HOH . E 5 HOH A 131 631 131 HOH HOH . E 5 HOH A 132 632 132 HOH HOH . E 5 HOH A 133 633 133 HOH HOH . E 5 HOH A 134 634 134 HOH HOH . E 5 HOH A 135 635 135 HOH HOH . E 5 HOH A 136 636 136 HOH HOH . E 5 HOH A 137 637 137 HOH HOH . E 5 HOH A 138 638 138 HOH HOH . E 5 HOH A 139 639 139 HOH HOH . E 5 HOH A 140 640 140 HOH HOH . E 5 HOH A 141 641 141 HOH HOH . E 5 HOH A 142 642 142 HOH HOH . E 5 HOH A 143 643 143 HOH HOH . E 5 HOH A 144 644 144 HOH HOH . E 5 HOH A 145 645 145 HOH HOH . E 5 HOH A 146 646 146 HOH HOH . E 5 HOH A 147 647 147 HOH HOH . E 5 HOH A 148 648 148 HOH HOH . E 5 HOH A 149 649 149 HOH HOH . E 5 HOH A 150 650 150 HOH HOH . E 5 HOH A 151 651 151 HOH HOH . E 5 HOH A 152 652 152 HOH HOH . E 5 HOH A 153 653 154 HOH HOH . E 5 HOH A 154 654 155 HOH HOH . E 5 HOH A 155 655 156 HOH HOH . E 5 HOH A 156 656 157 HOH HOH . E 5 HOH A 157 657 159 HOH HOH . E 5 HOH A 158 658 160 HOH HOH . E 5 HOH A 159 659 161 HOH HOH . E 5 HOH A 160 660 162 HOH HOH . E 5 HOH A 161 661 163 HOH HOH . E 5 HOH A 162 662 164 HOH HOH . E 5 HOH A 163 663 165 HOH HOH . E 5 HOH A 164 664 166 HOH HOH . E 5 HOH A 165 665 167 HOH HOH . E 5 HOH A 166 666 168 HOH HOH . E 5 HOH A 167 667 169 HOH HOH . E 5 HOH A 168 668 170 HOH HOH . E 5 HOH A 169 669 171 HOH HOH . E 5 HOH A 170 670 172 HOH HOH . E 5 HOH A 171 671 173 HOH HOH . E 5 HOH A 172 672 174 HOH HOH . E 5 HOH A 173 673 175 HOH HOH . E 5 HOH A 174 674 176 HOH HOH . E 5 HOH A 175 675 177 HOH HOH . E 5 HOH A 176 676 178 HOH HOH . E 5 HOH A 177 677 179 HOH HOH . E 5 HOH A 178 678 180 HOH HOH . E 5 HOH A 179 679 181 HOH HOH . E 5 HOH A 180 680 182 HOH HOH . E 5 HOH A 181 681 183 HOH HOH . E 5 HOH A 182 682 184 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C01 34U . . . B 2 27.681 2.255 131.604 1 42.01 ? C01 34U 401 A 1 HETATM 2 O O02 34U . . . B 2 27.04 0.957 131.659 1 35.5 ? O02 34U 401 A 1 HETATM 3 C C03 34U . . . B 2 27.884 -0.012 132.098 1 32.49 ? C03 34U 401 A 1 HETATM 4 C C04 34U . . . B 2 26.954 -1.255 132.536 1 24.85 ? C04 34U 401 A 1 HETATM 5 O O05 34U . . . B 2 26.273 -0.847 133.72 1 24.62 ? O05 34U 401 A 1 HETATM 6 C C06 34U . . . B 2 25.636 -1.879 134.457 1 19.57 ? C06 34U 401 A 1 HETATM 7 C C07 34U . . . B 2 25.602 -3.201 133.944 1 17.37 ? C07 34U 401 A 1 HETATM 8 C C08 34U . . . B 2 24.983 -4.187 134.698 1 17.25 ? C08 34U 401 A 1 HETATM 9 C C09 34U . . . B 2 24.397 -3.888 135.897 1 15.6 ? C09 34U 401 A 1 HETATM 10 C C10 34U . . . B 2 24.426 -2.516 136.418 1 17.88 ? C10 34U 401 A 1 HETATM 11 C C11 34U . . . B 2 25.018 -1.557 135.707 1 19.84 ? C11 34U 401 A 1 HETATM 12 N N12 34U . . . B 2 23.843 -5.091 136.384 1 17.06 ? N12 34U 401 A 1 HETATM 13 C C13 34U . . . B 2 24.096 -6.073 135.53 1 17.37 ? C13 34U 401 A 1 HETATM 14 N N14 34U . . . B 2 24.781 -5.53 134.482 1 16.51 ? N14 34U 401 A 1 HETATM 15 C C15 34U . . . B 2 23.178 -5.271 137.61 1 17.45 ? C15 34U 401 A 1 HETATM 16 N N16 34U . . . B 2 22.7 -4.195 138.288 1 17.02 ? N16 34U 401 A 1 HETATM 17 C C17 34U . . . B 2 22.085 -4.319 139.508 1 16.3 ? C17 34U 401 A 1 HETATM 18 C C18 34U . . . B 2 21.957 -5.54 140.1 1 18.81 ? C18 34U 401 A 1 HETATM 19 C C19 34U . . . B 2 21.331 -5.654 141.395 1 22.37 ? C19 34U 401 A 1 HETATM 20 C C20 34U . . . B 2 20.847 -4.516 142.02 1 20.19 ? C20 34U 401 A 1 HETATM 21 C C21 34U . . . B 2 20.965 -3.261 141.413 1 19.06 ? C21 34U 401 A 1 HETATM 22 C C22 34U . . . B 2 21.586 -3.149 140.154 1 17.85 ? C22 34U 401 A 1 HETATM 23 N N23 34U . . . B 2 21.704 -1.887 139.47 1 18.82 ? N23 34U 401 A 1 HETATM 24 C C24 34U . . . B 2 20.862 -1.784 138.281 1 15.45 ? C24 34U 401 A 1 HETATM 25 C C25 34U . . . B 2 21.179 -0.549 137.443 1 16.32 ? C25 34U 401 A 1 HETATM 26 C C26 34U . . . B 2 20.994 0.679 138.272 1 17.6 ? C26 34U 401 A 1 HETATM 27 C C27 34U . . . B 2 21.821 0.654 139.471 1 17.48 ? C27 34U 401 A 1 HETATM 28 C C28 34U . . . B 2 21.68 -0.652 140.271 1 16.3 ? C28 34U 401 A 1 HETATM 29 N N29 34U . . . B 2 21.336 1.834 137.436 1 16.2 ? N29 34U 401 A 1 HETATM 30 C C30 34U . . . B 2 22.497 -6.754 139.403 1 18.25 ? C30 34U 401 A 1 HETATM 31 C C31 34U . . . B 2 23.118 -6.566 138.15 1 19.21 ? C31 34U 401 A 1 # _model_server_stats.io_time_ms 11 _model_server_stats.parse_time_ms 15 _model_server_stats.create_model_time_ms 7 _model_server_stats.query_time_ms 357 _model_server_stats.encode_time_ms 11 _model_server_stats.element_count 31 #