data_4QMV # _model_server_result.job_id B0AKcNs8rd51-I22BPge3Q _model_server_result.datetime_utc '2024-11-13 04:41:08' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 4qmv # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"B","auth_seq_id":401}' # _entry.id 4QMV # _exptl.entry_id 4QMV _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 474.479 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description N-{2-[(1S,4R)-6-{[4-(cyclobutylamino)-5-(trifluoromethyl)pyrimidin-2-yl]amino}-1,2,3,4-tetrahydro-1,4-epiminonaphthalen-9-yl]-2-oxoethyl}acetamide _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 93.98 _cell.angle_gamma 90 _cell.entry_id 4QMV _cell.length_a 100.08 _cell.length_b 57.85 _cell.length_c 61.78 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 4QMV _symmetry.cell_setting ? _symmetry.Int_Tables_number 5 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'C 1 2 1' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id B _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order covale ? covale1 A C ASN 184 A ASN 177 1_555 A N TPO 185 A TPO 178 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.331 ? covale ? covale2 A C TPO 185 A TPO 178 1_555 A N PHE 186 A PHE 179 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.325 ? # _chem_comp.formula 'C23 H25 F3 N6 O2' _chem_comp.formula_weight 474.479 _chem_comp.id 34W _chem_comp.mon_nstd_flag . _chem_comp.name N-{2-[(1S,4R)-6-{[4-(cyclobutylamino)-5-(trifluoromethyl)pyrimidin-2-yl]amino}-1,2,3,4-tetrahydro-1,4-epiminonaphthalen-9-yl]-2-oxoethyl}acetamide _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C11 C10 34W sing 1 n n C11 C12 34W sing 2 n n C10 C09 34W sing 3 n n C12 N08 34W sing 4 n n C12 C13 34W sing 5 n n O03 C02 34W doub 6 n n N08 C09 34W sing 7 n n N08 C06 34W sing 8 n n C13 C18 34W doub 9 n y C13 C14 34W sing 10 n y C05 C06 34W sing 11 n n C05 N04 34W sing 12 n n C18 C17 34W sing 13 n y C09 C14 34W sing 14 n n C02 N04 34W sing 15 n n C02 C01 34W sing 16 n n C06 O07 34W doub 17 n n C14 C15 34W doub 18 n y C17 N19 34W sing 19 n n C17 C16 34W doub 20 n y N19 C20 34W sing 21 n n C15 C16 34W sing 22 n y N21 C20 34W doub 23 n y N21 C22 34W sing 24 n y C20 N25 34W sing 25 n y C22 C23 34W doub 26 n y N25 C24 34W doub 27 n y C23 C24 34W sing 28 n y C23 C31 34W sing 29 n n C24 N26 34W sing 30 n n F34 C31 34W sing 31 n n C30 C27 34W sing 32 n n C30 C29 34W sing 33 n n C31 F32 34W sing 34 n n C31 F33 34W sing 35 n n N26 C27 34W sing 36 n n C27 C28 34W sing 37 n n C29 C28 34W sing 38 n n C01 H1 34W sing 39 n n C01 H2 34W sing 40 n n C01 H3 34W sing 41 n n N04 H4 34W sing 42 n n C05 H5 34W sing 43 n n C05 H6 34W sing 44 n n C09 H7 34W sing 45 n n C10 H8 34W sing 46 n n C10 H9 34W sing 47 n n C11 H10 34W sing 48 n n C11 H11 34W sing 49 n n C12 H12 34W sing 50 n n C15 H13 34W sing 51 n n C16 H14 34W sing 52 n n C18 H15 34W sing 53 n n N19 H16 34W sing 54 n n C22 H17 34W sing 55 n n N26 H18 34W sing 56 n n C27 H19 34W sing 57 n n C28 H20 34W sing 58 n n C28 H21 34W sing 59 n n C29 H22 34W sing 60 n n C29 H23 34W sing 61 n n C30 H24 34W sing 62 n n C30 H25 34W sing 63 n n # _atom_sites.entry_id 4QMV _atom_sites.fract_transf_matrix[1][1] 0.009992 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.000696 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.017286 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.016226 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 34W A 1 401 1 34W LIG . C 3 EDO A 1 402 1 EDO EDO . D 3 EDO A 1 403 2 EDO EDO . E 4 HOH A 1 501 1 HOH HOH . E 4 HOH A 2 502 2 HOH HOH . E 4 HOH A 3 503 3 HOH HOH . E 4 HOH A 4 504 4 HOH HOH . E 4 HOH A 5 505 5 HOH HOH . E 4 HOH A 6 506 6 HOH HOH . E 4 HOH A 7 507 7 HOH HOH . E 4 HOH A 8 508 8 HOH HOH . E 4 HOH A 9 509 9 HOH HOH . E 4 HOH A 10 510 10 HOH HOH . E 4 HOH A 11 511 11 HOH HOH . E 4 HOH A 12 512 12 HOH HOH . E 4 HOH A 13 513 13 HOH HOH . E 4 HOH A 14 514 14 HOH HOH . E 4 HOH A 15 515 15 HOH HOH . E 4 HOH A 16 516 16 HOH HOH . E 4 HOH A 17 517 17 HOH HOH . E 4 HOH A 18 518 18 HOH HOH . E 4 HOH A 19 519 19 HOH HOH . E 4 HOH A 20 520 20 HOH HOH . E 4 HOH A 21 521 21 HOH HOH . E 4 HOH A 22 522 22 HOH HOH . E 4 HOH A 23 523 23 HOH HOH . E 4 HOH A 24 524 24 HOH HOH . E 4 HOH A 25 525 25 HOH HOH . E 4 HOH A 26 526 26 HOH HOH . E 4 HOH A 27 527 27 HOH HOH . E 4 HOH A 28 528 28 HOH HOH . E 4 HOH A 29 529 29 HOH HOH . E 4 HOH A 30 530 30 HOH HOH . E 4 HOH A 31 531 31 HOH HOH . E 4 HOH A 32 532 32 HOH HOH . E 4 HOH A 33 533 33 HOH HOH . E 4 HOH A 34 534 34 HOH HOH . E 4 HOH A 35 535 35 HOH HOH . E 4 HOH A 36 536 36 HOH HOH . E 4 HOH A 37 537 37 HOH HOH . E 4 HOH A 38 538 38 HOH HOH . E 4 HOH A 39 539 39 HOH HOH . E 4 HOH A 40 540 40 HOH HOH . E 4 HOH A 41 541 41 HOH HOH . E 4 HOH A 42 542 42 HOH HOH . E 4 HOH A 43 543 43 HOH HOH . E 4 HOH A 44 544 44 HOH HOH . E 4 HOH A 45 545 45 HOH HOH . E 4 HOH A 46 546 46 HOH HOH . E 4 HOH A 47 547 47 HOH HOH . E 4 HOH A 48 548 48 HOH HOH . E 4 HOH A 49 549 49 HOH HOH . E 4 HOH A 50 550 50 HOH HOH . E 4 HOH A 51 551 51 HOH HOH . E 4 HOH A 52 552 52 HOH HOH . E 4 HOH A 53 553 53 HOH HOH . E 4 HOH A 54 554 54 HOH HOH . E 4 HOH A 55 555 55 HOH HOH . E 4 HOH A 56 556 56 HOH HOH . E 4 HOH A 57 557 57 HOH HOH . E 4 HOH A 58 558 58 HOH HOH . E 4 HOH A 59 559 59 HOH HOH . E 4 HOH A 60 560 60 HOH HOH . E 4 HOH A 61 561 61 HOH HOH . E 4 HOH A 62 562 62 HOH HOH . E 4 HOH A 63 563 63 HOH HOH . E 4 HOH A 64 564 64 HOH HOH . E 4 HOH A 65 565 65 HOH HOH . E 4 HOH A 66 566 66 HOH HOH . E 4 HOH A 67 567 67 HOH HOH . E 4 HOH A 68 568 68 HOH HOH . E 4 HOH A 69 569 69 HOH HOH . E 4 HOH A 70 570 70 HOH HOH . E 4 HOH A 71 571 71 HOH HOH . E 4 HOH A 72 572 72 HOH HOH . E 4 HOH A 73 573 73 HOH HOH . E 4 HOH A 74 574 74 HOH HOH . E 4 HOH A 75 575 75 HOH HOH . E 4 HOH A 76 576 76 HOH HOH . E 4 HOH A 77 577 77 HOH HOH . E 4 HOH A 78 578 78 HOH HOH . E 4 HOH A 79 579 79 HOH HOH . E 4 HOH A 80 580 80 HOH HOH . E 4 HOH A 81 581 81 HOH HOH . E 4 HOH A 82 582 82 HOH HOH . E 4 HOH A 83 583 83 HOH HOH . E 4 HOH A 84 584 84 HOH HOH . E 4 HOH A 85 585 85 HOH HOH . E 4 HOH A 86 586 86 HOH HOH . E 4 HOH A 87 587 87 HOH HOH . E 4 HOH A 88 588 88 HOH HOH . E 4 HOH A 89 589 89 HOH HOH . E 4 HOH A 90 590 90 HOH HOH . E 4 HOH A 91 591 91 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C01 34W . . . B 2 37.542 2.822 71.672 1 60.51 ? C01 34W 401 A 1 HETATM 2 C C02 34W . . . B 2 36.319 2.508 70.909 1 62.77 ? C02 34W 401 A 1 HETATM 3 O O03 34W . . . B 2 36.131 3.076 69.798 1 57.85 ? O03 34W 401 A 1 HETATM 4 N N04 34W . . . B 2 35.411 1.627 71.42 1 58.21 ? N04 34W 401 A 1 HETATM 5 C C05 34W . . . B 2 34.196 1.26 70.762 1 48.03 ? C05 34W 401 A 1 HETATM 6 C C06 34W . . . B 2 33.038 2.115 71.144 1 41.3 ? C06 34W 401 A 1 HETATM 7 O O07 34W . . . B 2 33.224 3.01 72.012 1 44.29 ? O07 34W 401 A 1 HETATM 8 N N08 34W . . . B 2 31.781 1.973 70.59 1 37.46 ? N08 34W 401 A 1 HETATM 9 C C09 34W . . . B 2 30.578 2.702 70.878 1 36.44 ? C09 34W 401 A 1 HETATM 10 C C10 34W . . . B 2 30.044 3.069 69.452 1 31.17 ? C10 34W 401 A 1 HETATM 11 C C11 34W . . . B 2 30.595 1.912 68.571 1 27.85 ? C11 34W 401 A 1 HETATM 12 C C12 34W . . . B 2 31.311 1.021 69.634 1 34.33 ? C12 34W 401 A 1 HETATM 13 C C13 34W . . . B 2 30.361 0.448 70.613 1 31.59 ? C13 34W 401 A 1 HETATM 14 C C14 34W . . . B 2 29.898 1.507 71.4 1 34.23 ? C14 34W 401 A 1 HETATM 15 C C15 34W . . . B 2 28.961 1.309 72.425 1 34.69 ? C15 34W 401 A 1 HETATM 16 C C16 34W . . . B 2 28.51 -0.013 72.643 1 30.26 ? C16 34W 401 A 1 HETATM 17 C C17 34W . . . B 2 28.987 -1.099 71.866 1 28.51 ? C17 34W 401 A 1 HETATM 18 C C18 34W . . . B 2 29.914 -0.86 70.827 1 29.91 ? C18 34W 401 A 1 HETATM 19 N N19 34W . . . B 2 28.525 -2.357 72.088 1 26.12 ? N19 34W 401 A 1 HETATM 20 C C20 34W . . . B 2 27.875 -2.953 73.123 1 26.54 ? C20 34W 401 A 1 HETATM 21 N N21 34W . . . B 2 27.582 -4.271 73.075 1 22.88 ? N21 34W 401 A 1 HETATM 22 C C22 34W . . . B 2 26.924 -4.901 74.063 1 24.15 ? C22 34W 401 A 1 HETATM 23 C C23 34W . . . B 2 26.508 -4.206 75.208 1 23.17 ? C23 34W 401 A 1 HETATM 24 C C24 34W . . . B 2 26.816 -2.822 75.252 1 25.89 ? C24 34W 401 A 1 HETATM 25 N N25 34W . . . B 2 27.483 -2.252 74.211 1 25.5 ? N25 34W 401 A 1 HETATM 26 N N26 34W . . . B 2 26.467 -2.06 76.324 1 29.35 ? N26 34W 401 A 1 HETATM 27 C C27 34W . . . B 2 26.946 -0.732 76.551 1 30.44 ? C27 34W 401 A 1 HETATM 28 C C28 34W . . . B 2 26.545 -0.189 77.94 1 33.39 ? C28 34W 401 A 1 HETATM 29 C C29 34W . . . B 2 26.218 1.145 77.26 1 32.9 ? C29 34W 401 A 1 HETATM 30 C C30 34W . . . B 2 26.026 0.355 75.954 1 31.29 ? C30 34W 401 A 1 HETATM 31 C C31 34W . . . B 2 25.781 -4.943 76.272 1 24.99 ? C31 34W 401 A 1 HETATM 32 F F32 34W . . . B 2 24.507 -4.455 76.474 1 27.26 ? F32 34W 401 A 1 HETATM 33 F F33 34W . . . B 2 26.462 -4.891 77.449 1 23.5 ? F33 34W 401 A 1 HETATM 34 F F34 34W . . . B 2 25.628 -6.259 75.939 1 22.29 ? F34 34W 401 A 1 # _model_server_stats.io_time_ms 7 _model_server_stats.parse_time_ms 7 _model_server_stats.create_model_time_ms 3 _model_server_stats.query_time_ms 265 _model_server_stats.encode_time_ms 1 _model_server_stats.element_count 34 #