data_4QMY # _model_server_result.job_id uX9fR1MWaEPMC7Dd1z81WA _model_server_result.datetime_utc '2024-11-06 01:50:00' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 4qmy # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"B","auth_seq_id":401}' # _entry.id 4QMY # _exptl.entry_id 4QMY _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 466.531 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description STAUROSPORINE _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 111.63 _cell.angle_gamma 90 _cell.entry_id 4QMY _cell.length_a 47.439 _cell.length_b 54.79 _cell.length_c 60.884 _cell.Z_PDB 2 _cell.pdbx_unique_axis ? # _symmetry.entry_id 4QMY _symmetry.cell_setting ? _symmetry.Int_Tables_number 4 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1 21 1' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id B _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order covale ? covale1 A C ASN 184 A ASN 177 1_555 A N TPO 185 A TPO 178 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.328 ? covale ? covale2 A C TPO 185 A TPO 178 1_555 A N PHE 186 A PHE 179 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.33 ? # _chem_comp.formula 'C28 H26 N4 O3' _chem_comp.formula_weight 466.531 _chem_comp.id STU _chem_comp.mon_nstd_flag . _chem_comp.name STAUROSPORINE _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag O4 C25 STU sing 299 n n O4 C21 STU sing 300 n n C25 C24 STU sing 301 n n C25 N3 STU sing 302 n n C25 H25 STU sing 303 n n C24 C23 STU sing 304 n n C24 H241 STU sing 305 n n C24 H242 STU sing 306 n n C23 C22 STU sing 307 n n C23 N4 STU sing 308 n n C23 H23 STU sing 309 n n C22 C21 STU sing 310 n n C22 O6 STU sing 311 n n C22 H22 STU sing 312 n n C21 C26 STU sing 313 n n C21 N2 STU sing 314 n n C26 H261 STU sing 315 n n C26 H262 STU sing 316 n n C26 H263 STU sing 317 n n N2 C18 STU sing 318 n y N2 C17 STU sing 319 n y C18 C19 STU doub 320 n y C18 C11 STU sing 321 n y C19 C6 STU sing 322 n y C19 N3 STU sing 323 n y C6 C7 STU doub 324 n y C6 C5 STU sing 325 n y C7 C10 STU sing 326 n y C7 C8 STU sing 327 n n C10 C11 STU doub 328 n y C10 C9 STU sing 329 n n C11 C12 STU sing 330 n y C12 C17 STU doub 331 n y C12 C13 STU sing 332 n y C17 C16 STU sing 333 n y C16 C15 STU doub 334 n y C16 H16 STU sing 335 n n C15 C14 STU sing 336 n y C15 H15 STU sing 337 n n C14 C13 STU doub 338 n y C14 H14 STU sing 339 n n C13 H13 STU sing 340 n n C9 N1 STU sing 341 n n C9 H91 STU sing 342 n n C9 H92 STU sing 343 n n N1 C8 STU sing 344 n n N1 HN1 STU sing 345 n n C8 O5 STU doub 346 n n C5 C20 STU doub 347 n y C5 C4 STU sing 348 n y C20 C1 STU sing 349 n y C20 N3 STU sing 350 n y C1 C2 STU doub 351 n y C1 H1 STU sing 352 n n C2 C3 STU sing 353 n y C2 H2 STU sing 354 n n C3 C4 STU doub 355 n y C3 H3 STU sing 356 n n C4 H4 STU sing 357 n n O6 C27 STU sing 358 n n C27 H271 STU sing 359 n n C27 H272 STU sing 360 n n C27 H273 STU sing 361 n n N4 C28 STU sing 362 n n N4 HN4 STU sing 363 n n C28 H281 STU sing 364 n n C28 H282 STU sing 365 n n C28 H283 STU sing 366 n n # _atom_sites.entry_id 4QMY _atom_sites.fract_transf_matrix[1][1] 0.02108 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.008357 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.018252 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.017668 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 STU A 1 401 1 STU STU . C 3 CL A 1 402 1 CL CL . D 4 EDO A 1 403 1 EDO EDO . E 5 HOH A 1 501 1 HOH HOH . E 5 HOH A 2 502 2 HOH HOH . E 5 HOH A 3 503 3 HOH HOH . E 5 HOH A 4 504 4 HOH HOH . E 5 HOH A 5 505 5 HOH HOH . E 5 HOH A 6 506 6 HOH HOH . E 5 HOH A 7 507 7 HOH HOH . E 5 HOH A 8 508 8 HOH HOH . E 5 HOH A 9 509 9 HOH HOH . E 5 HOH A 10 510 10 HOH HOH . E 5 HOH A 11 511 11 HOH HOH . E 5 HOH A 12 512 12 HOH HOH . E 5 HOH A 13 513 13 HOH HOH . E 5 HOH A 14 514 14 HOH HOH . E 5 HOH A 15 515 15 HOH HOH . E 5 HOH A 16 516 16 HOH HOH . E 5 HOH A 17 517 17 HOH HOH . E 5 HOH A 18 518 18 HOH HOH . E 5 HOH A 19 519 19 HOH HOH . E 5 HOH A 20 520 20 HOH HOH . E 5 HOH A 21 521 21 HOH HOH . E 5 HOH A 22 522 22 HOH HOH . E 5 HOH A 23 523 23 HOH HOH . E 5 HOH A 24 524 24 HOH HOH . E 5 HOH A 25 525 25 HOH HOH . E 5 HOH A 26 526 26 HOH HOH . E 5 HOH A 27 527 27 HOH HOH . E 5 HOH A 28 528 28 HOH HOH . E 5 HOH A 29 529 29 HOH HOH . E 5 HOH A 30 530 30 HOH HOH . E 5 HOH A 31 531 31 HOH HOH . E 5 HOH A 32 532 32 HOH HOH . E 5 HOH A 33 533 33 HOH HOH . E 5 HOH A 34 534 34 HOH HOH . E 5 HOH A 35 535 35 HOH HOH . E 5 HOH A 36 536 36 HOH HOH . E 5 HOH A 37 537 37 HOH HOH . E 5 HOH A 38 538 38 HOH HOH . E 5 HOH A 39 539 39 HOH HOH . E 5 HOH A 40 540 40 HOH HOH . E 5 HOH A 41 541 41 HOH HOH . E 5 HOH A 42 542 42 HOH HOH . E 5 HOH A 43 543 43 HOH HOH . E 5 HOH A 44 544 44 HOH HOH . E 5 HOH A 45 545 45 HOH HOH . E 5 HOH A 46 546 46 HOH HOH . E 5 HOH A 47 547 47 HOH HOH . E 5 HOH A 48 548 48 HOH HOH . E 5 HOH A 49 549 49 HOH HOH . E 5 HOH A 50 550 50 HOH HOH . E 5 HOH A 51 551 51 HOH HOH . E 5 HOH A 52 552 52 HOH HOH . E 5 HOH A 53 553 53 HOH HOH . E 5 HOH A 54 554 54 HOH HOH . E 5 HOH A 55 555 55 HOH HOH . E 5 HOH A 56 556 56 HOH HOH . E 5 HOH A 57 557 57 HOH HOH . E 5 HOH A 58 558 58 HOH HOH . E 5 HOH A 59 559 59 HOH HOH . E 5 HOH A 60 560 60 HOH HOH . E 5 HOH A 61 561 61 HOH HOH . E 5 HOH A 62 562 62 HOH HOH . E 5 HOH A 63 563 63 HOH HOH . E 5 HOH A 64 564 64 HOH HOH . E 5 HOH A 65 565 65 HOH HOH . E 5 HOH A 66 566 66 HOH HOH . E 5 HOH A 67 567 67 HOH HOH . E 5 HOH A 68 568 68 HOH HOH . E 5 HOH A 69 569 69 HOH HOH . E 5 HOH A 70 570 70 HOH HOH . E 5 HOH A 71 571 71 HOH HOH . E 5 HOH A 72 572 72 HOH HOH . E 5 HOH A 73 573 73 HOH HOH . E 5 HOH A 74 574 74 HOH HOH . E 5 HOH A 75 575 75 HOH HOH . E 5 HOH A 76 576 76 HOH HOH . E 5 HOH A 77 577 77 HOH HOH . E 5 HOH A 78 578 78 HOH HOH . E 5 HOH A 79 579 79 HOH HOH . E 5 HOH A 80 580 80 HOH HOH . E 5 HOH A 81 581 81 HOH HOH . E 5 HOH A 82 582 82 HOH HOH . E 5 HOH A 83 583 83 HOH HOH . E 5 HOH A 84 584 84 HOH HOH . E 5 HOH A 85 585 85 HOH HOH . E 5 HOH A 86 586 86 HOH HOH . E 5 HOH A 87 587 87 HOH HOH . E 5 HOH A 88 588 88 HOH HOH . E 5 HOH A 89 589 89 HOH HOH . E 5 HOH A 90 590 90 HOH HOH . E 5 HOH A 91 591 91 HOH HOH . E 5 HOH A 92 592 92 HOH HOH . E 5 HOH A 93 593 93 HOH HOH . E 5 HOH A 94 594 94 HOH HOH . E 5 HOH A 95 595 95 HOH HOH . E 5 HOH A 96 596 96 HOH HOH . E 5 HOH A 97 597 97 HOH HOH . E 5 HOH A 98 598 98 HOH HOH . E 5 HOH A 99 599 99 HOH HOH . E 5 HOH A 100 600 100 HOH HOH . E 5 HOH A 101 601 101 HOH HOH . E 5 HOH A 102 602 102 HOH HOH . E 5 HOH A 103 603 103 HOH HOH . E 5 HOH A 104 604 104 HOH HOH . E 5 HOH A 105 605 105 HOH HOH . E 5 HOH A 106 606 106 HOH HOH . E 5 HOH A 107 607 107 HOH HOH . E 5 HOH A 108 608 108 HOH HOH . E 5 HOH A 109 609 109 HOH HOH . E 5 HOH A 110 610 110 HOH HOH . E 5 HOH A 111 611 111 HOH HOH . E 5 HOH A 112 612 112 HOH HOH . E 5 HOH A 113 613 113 HOH HOH . E 5 HOH A 114 614 114 HOH HOH . E 5 HOH A 115 615 115 HOH HOH . E 5 HOH A 116 616 116 HOH HOH . E 5 HOH A 117 617 117 HOH HOH . E 5 HOH A 118 618 118 HOH HOH . E 5 HOH A 119 619 119 HOH HOH . E 5 HOH A 120 620 120 HOH HOH . E 5 HOH A 121 621 121 HOH HOH . E 5 HOH A 122 622 122 HOH HOH . E 5 HOH A 123 623 123 HOH HOH . E 5 HOH A 124 624 124 HOH HOH . E 5 HOH A 125 625 125 HOH HOH . E 5 HOH A 126 626 126 HOH HOH . E 5 HOH A 127 627 127 HOH HOH . E 5 HOH A 128 628 128 HOH HOH . E 5 HOH A 129 629 129 HOH HOH . E 5 HOH A 130 630 130 HOH HOH . E 5 HOH A 131 631 131 HOH HOH . E 5 HOH A 132 632 132 HOH HOH . E 5 HOH A 133 633 133 HOH HOH . E 5 HOH A 134 634 134 HOH HOH . E 5 HOH A 135 635 135 HOH HOH . E 5 HOH A 136 636 136 HOH HOH . E 5 HOH A 137 637 137 HOH HOH . E 5 HOH A 138 638 138 HOH HOH . E 5 HOH A 139 639 139 HOH HOH . E 5 HOH A 140 640 140 HOH HOH . E 5 HOH A 141 641 141 HOH HOH . E 5 HOH A 142 642 142 HOH HOH . E 5 HOH A 143 643 143 HOH HOH . E 5 HOH A 144 644 144 HOH HOH . E 5 HOH A 145 645 145 HOH HOH . E 5 HOH A 146 646 146 HOH HOH . E 5 HOH A 147 647 147 HOH HOH . E 5 HOH A 148 648 148 HOH HOH . E 5 HOH A 149 649 149 HOH HOH . E 5 HOH A 150 650 150 HOH HOH . E 5 HOH A 151 651 151 HOH HOH . E 5 HOH A 152 652 152 HOH HOH . E 5 HOH A 153 653 153 HOH HOH . E 5 HOH A 154 654 154 HOH HOH . E 5 HOH A 155 655 155 HOH HOH . E 5 HOH A 156 656 156 HOH HOH . E 5 HOH A 157 657 157 HOH HOH . E 5 HOH A 158 658 158 HOH HOH . E 5 HOH A 159 659 159 HOH HOH . E 5 HOH A 160 660 160 HOH HOH . E 5 HOH A 161 661 161 HOH HOH . E 5 HOH A 162 662 162 HOH HOH . E 5 HOH A 163 663 163 HOH HOH . E 5 HOH A 164 664 164 HOH HOH . E 5 HOH A 165 665 165 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 O O4 STU . . . B 2 23.232 -2.565 75.035 1 43.96 ? O4 STU 401 A 1 HETATM 2 C C25 STU . . . B 2 22.58 -2.852 73.751 1 39.43 ? C25 STU 401 A 1 HETATM 3 C C24 STU . . . B 2 23.282 -3.903 72.86 1 43.39 ? C24 STU 401 A 1 HETATM 4 C C23 STU . . . B 2 24.5 -4.361 73.564 1 36.6 ? C23 STU 401 A 1 HETATM 5 C C22 STU . . . B 2 25.343 -3.162 73.851 1 39.61 ? C22 STU 401 A 1 HETATM 6 C C21 STU . . . B 2 24.607 -2.315 74.966 1 38.73 ? C21 STU 401 A 1 HETATM 7 C C26 STU . . . B 2 25.037 -2.847 76.326 1 40.71 ? C26 STU 401 A 1 HETATM 8 N N2 STU . . . B 2 24.998 -0.852 74.734 1 40.93 ? N2 STU 401 A 1 HETATM 9 C C18 STU . . . B 2 24.248 -0.086 73.898 1 37.53 ? C18 STU 401 A 1 HETATM 10 C C19 STU . . . B 2 23.098 -0.393 73.182 1 38.27 ? C19 STU 401 A 1 HETATM 11 C C6 STU . . . B 2 22.435 0.587 72.339 1 35.97 ? C6 STU 401 A 1 HETATM 12 C C7 STU . . . B 2 23.02 1.951 72.256 1 30.52 ? C7 STU 401 A 1 HETATM 13 C C10 STU . . . B 2 24.168 2.274 72.961 1 37.29 ? C10 STU 401 A 1 HETATM 14 C C11 STU . . . B 2 24.813 1.245 73.808 1 36.68 ? C11 STU 401 A 1 HETATM 15 C C12 STU . . . B 2 26.019 1.246 74.68 1 36.73 ? C12 STU 401 A 1 HETATM 16 C C17 STU . . . B 2 26.132 -0.046 75.246 1 38.33 ? C17 STU 401 A 1 HETATM 17 C C16 STU . . . B 2 27.245 -0.283 76.135 1 42.17 ? C16 STU 401 A 1 HETATM 18 C C15 STU . . . B 2 28.161 0.733 76.421 1 42.84 ? C15 STU 401 A 1 HETATM 19 C C14 STU . . . B 2 28.023 2.014 75.851 1 36.22 ? C14 STU 401 A 1 HETATM 20 C C13 STU . . . B 2 26.939 2.267 74.969 1 37.15 ? C13 STU 401 A 1 HETATM 21 C C9 STU . . . B 2 24.464 3.658 72.659 1 35.21 ? C9 STU 401 A 1 HETATM 22 N N1 STU . . . B 2 23.523 4.122 71.787 1 25.04 ? N1 STU 401 A 1 HETATM 23 C C8 STU . . . B 2 22.635 3.144 71.53 1 33.45 ? C8 STU 401 A 1 HETATM 24 O O5 STU . . . B 2 21.547 3.21 70.73 1 30.02 ? O5 STU 401 A 1 HETATM 25 C C5 STU . . . B 2 21.213 -0.123 71.715 1 35.61 ? C5 STU 401 A 1 HETATM 26 C C20 STU . . . B 2 21.199 -1.479 72.217 1 40.22 ? C20 STU 401 A 1 HETATM 27 C C1 STU . . . B 2 20.181 -2.394 71.821 1 40.02 ? C1 STU 401 A 1 HETATM 28 C C2 STU . . . B 2 19.165 -1.963 70.927 1 36.43 ? C2 STU 401 A 1 HETATM 29 C C3 STU . . . B 2 19.168 -0.622 70.434 1 38.1 ? C3 STU 401 A 1 HETATM 30 C C4 STU . . . B 2 20.193 0.298 70.823 1 36.56 ? C4 STU 401 A 1 HETATM 31 N N3 STU . . . B 2 22.362 -1.588 73.084 1 39.17 ? N3 STU 401 A 1 HETATM 32 O O6 STU . . . B 2 25.494 -2.398 72.673 1 36.71 ? O6 STU 401 A 1 HETATM 33 C C27 STU . . . B 2 26.766 -2.085 72.161 1 34.39 ? C27 STU 401 A 1 HETATM 34 N N4 STU . . . B 2 25.231 -5.341 72.754 1 37.91 ? N4 STU 401 A 1 HETATM 35 C C28 STU . . . B 2 24.53 -6.615 72.732 1 40.8 ? C28 STU 401 A 1 # _model_server_stats.io_time_ms 6 _model_server_stats.parse_time_ms 6 _model_server_stats.create_model_time_ms 2 _model_server_stats.query_time_ms 222 _model_server_stats.encode_time_ms 3 _model_server_stats.element_count 35 #