data_4QN9 # _model_server_result.job_id 1-aHJFx-WVhPOiot_S_gnQ _model_server_result.datetime_utc '2024-11-23 08:41:32' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 4qn9 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"N","auth_seq_id":603}' # _entry.id 4QN9 # _exptl.entry_id 4QN9 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 392.572 _entity.id 4 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description '(3ALPHA,5BETA,12ALPHA)-3,12-DIHYDROXYCHOLAN-24-OIC ACID' _entity.pdbx_number_of_molecules 11 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 4QN9 _cell.length_a 95.099 _cell.length_b 95.099 _cell.length_c 444.17 _cell.Z_PDB 24 _cell.pdbx_unique_axis ? # _symmetry.entry_id 4QN9 _symmetry.cell_setting ? _symmetry.Int_Tables_number 179 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 65 2 2' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R,S,T,U,V,W,X _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 4 F N N ? 4 G N N ? 4 H N N ? 4 I N N ? 4 L N N ? 4 M N N ? 4 N N N ? 4 R N N ? 4 S N N ? 4 T N N ? 4 U N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A NE2 HIS 185 A HIS 185 1_555 C ZN ZN . A ZN 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.388 ? metalc ? metalc2 A ND1 HIS 187 A HIS 187 1_555 C ZN ZN . A ZN 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.399 ? metalc ? metalc3 A OD1 ASP 189 A ASP 189 1_555 D ZN ZN . A ZN 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.352 ? metalc ? metalc4 A NE2 HIS 190 A HIS 190 1_555 D ZN ZN . A ZN 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.367 ? metalc ? metalc5 A NE2 HIS 253 A HIS 253 1_555 C ZN ZN . A ZN 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.379 ? metalc ? metalc6 A OD2 ASP 284 A ASP 284 1_555 C ZN ZN . A ZN 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.344 ? metalc ? metalc7 A OD2 ASP 284 A ASP 284 1_555 D ZN ZN . A ZN 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.161 ? metalc ? metalc8 A NE2 HIS 343 A HIS 343 1_555 D ZN ZN . A ZN 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.435 ? metalc ? metalc9 C ZN ZN . A ZN 501 1_555 E O12 3PE . A 3PE 503 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.243 ? metalc ? metalc10 D ZN ZN . A ZN 502 1_555 E O14 3PE . A 3PE 503 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.979 ? metalc ? metalc11 B NE2 HIS 185 B HIS 185 1_555 O ZN ZN . B ZN 604 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.372 ? metalc ? metalc12 B ND1 HIS 187 B HIS 187 1_555 O ZN ZN . B ZN 604 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.418 ? metalc ? metalc13 B OD1 ASP 189 B ASP 189 1_555 P ZN ZN . B ZN 605 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.308 ? metalc ? metalc14 B NE2 HIS 190 B HIS 190 1_555 P ZN ZN . B ZN 605 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.402 ? metalc ? metalc15 B NE2 HIS 253 B HIS 253 1_555 O ZN ZN . B ZN 604 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.293 ? metalc ? metalc16 B OD2 ASP 284 B ASP 284 1_555 O ZN ZN . B ZN 604 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.508 ? metalc ? metalc17 B OD2 ASP 284 B ASP 284 1_555 P ZN ZN . B ZN 605 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.094 ? metalc ? metalc18 B NE2 HIS 343 B HIS 343 1_555 P ZN ZN . B ZN 605 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.456 ? metalc ? metalc19 O ZN ZN . B ZN 604 1_555 Q O12 3PE . B 3PE 606 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.174 ? metalc ? metalc20 P ZN ZN . B ZN 605 1_555 Q O14 3PE . B 3PE 606 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.971 ? # _chem_comp.formula 'C24 H40 O4' _chem_comp.formula_weight 392.572 _chem_comp.id DXC _chem_comp.mon_nstd_flag . _chem_comp.name '(3ALPHA,5BETA,12ALPHA)-3,12-DIHYDROXYCHOLAN-24-OIC ACID' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms 'DEOXYCHOLIC ACID' # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 C2 DXC sing 215 n n C1 C6 DXC sing 216 n n C1 O2 DXC sing 217 n n C1 H1 DXC sing 218 n n C2 C3 DXC sing 219 n n C2 H22 DXC sing 220 n n C2 H21 DXC sing 221 n n C3 C4 DXC sing 222 n n C3 C7 DXC sing 223 n n C3 H3 DXC sing 224 n n C4 C5 DXC sing 225 n n C4 C10 DXC sing 226 n n C4 C18 DXC sing 227 n n C5 C6 DXC sing 228 n n C5 H52 DXC sing 229 n n C5 H51 DXC sing 230 n n C6 H62 DXC sing 231 n n C6 H61 DXC sing 232 n n C7 C8 DXC sing 233 n n C7 H72 DXC sing 234 n n C7 H71 DXC sing 235 n n C8 C9 DXC sing 236 n n C8 H82 DXC sing 237 n n C8 H81 DXC sing 238 n n C9 C10 DXC sing 239 n n C9 C11 DXC sing 240 n n C9 H9 DXC sing 241 n n C10 C14 DXC sing 242 n n C10 H10 DXC sing 243 n n C11 C12 DXC sing 244 n n C11 C15 DXC sing 245 n n C11 H11 DXC sing 246 n n C12 C13 DXC sing 247 n n C12 C17 DXC sing 248 n n C12 C20 DXC sing 249 n n C13 C14 DXC sing 250 n n C13 O1 DXC sing 251 n n C13 H13 DXC sing 252 n n C14 H142 DXC sing 253 n n C14 H141 DXC sing 254 n n C15 C16 DXC sing 255 n n C15 H152 DXC sing 256 n n C15 H151 DXC sing 257 n n C16 C17 DXC sing 258 n n C16 H162 DXC sing 259 n n C16 H161 DXC sing 260 n n C17 C19 DXC sing 261 n n C17 H17 DXC sing 262 n n C18 H183 DXC sing 263 n n C18 H182 DXC sing 264 n n C18 H181 DXC sing 265 n n C19 C21 DXC sing 266 n n C19 C24 DXC sing 267 n n C19 H19 DXC sing 268 n n O1 H1O1 DXC sing 269 n n O2 H2 DXC sing 270 n n C20 H203 DXC sing 271 n n C20 H202 DXC sing 272 n n C20 H201 DXC sing 273 n n C21 C22 DXC sing 274 n n C21 H212 DXC sing 275 n n C21 H211 DXC sing 276 n n C22 C23 DXC sing 277 n n C22 H222 DXC sing 278 n n C22 H221 DXC sing 279 n n C23 O3 DXC doub 280 n n C23 O4 DXC sing 281 n n O4 HO4 DXC sing 282 n n C24 H243 DXC sing 283 n n C24 H242 DXC sing 284 n n C24 H241 DXC sing 285 n n # _atom_sites.entry_id 4QN9 _atom_sites.fract_transf_matrix[1][1] 0.010515 _atom_sites.fract_transf_matrix[1][2] 0.006071 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.012142 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.002251 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 ZN A 1 501 501 ZN ZN . D 2 ZN A 1 502 502 ZN ZN . E 3 3PE A 1 503 600 3PE 3PE . F 4 DXC A 1 504 602 DXC DXC . G 4 DXC A 1 505 602 DXC DXC . H 4 DXC A 1 506 603 DXC DXC . I 4 DXC A 1 507 604 DXC DXC . J 5 SO4 A 1 508 1 SO4 SO4 . K 5 SO4 A 1 509 3 SO4 SO4 . L 4 DXC B 1 601 601 DXC DXC . M 4 DXC B 1 602 603 DXC DXC . N 4 DXC B 1 603 604 DXC DXC . O 2 ZN B 1 604 501 ZN ZN . P 2 ZN B 1 605 502 ZN ZN . Q 3 3PE B 1 606 600 3PE 3PE . R 4 DXC B 1 607 601 DXC DXC . S 4 DXC B 1 608 605 DXC DXC . T 4 DXC B 1 609 606 DXC DXC . U 4 DXC B 1 610 607 DXC DXC . V 5 SO4 B 1 611 2 SO4 SO4 . W 6 HOH A 1 601 9 HOH HOH . W 6 HOH A 2 602 16 HOH HOH . W 6 HOH A 3 603 17 HOH HOH . W 6 HOH A 4 604 19 HOH HOH . W 6 HOH A 5 605 20 HOH HOH . W 6 HOH A 6 606 21 HOH HOH . W 6 HOH A 7 607 24 HOH HOH . W 6 HOH A 8 608 28 HOH HOH . W 6 HOH A 9 609 32 HOH HOH . W 6 HOH A 10 610 33 HOH HOH . W 6 HOH A 11 611 35 HOH HOH . W 6 HOH A 12 612 37 HOH HOH . W 6 HOH A 13 613 38 HOH HOH . W 6 HOH A 14 614 44 HOH HOH . W 6 HOH A 15 615 47 HOH HOH . W 6 HOH A 16 616 48 HOH HOH . W 6 HOH A 17 617 52 HOH HOH . W 6 HOH A 18 618 54 HOH HOH . W 6 HOH A 19 619 56 HOH HOH . W 6 HOH A 20 620 58 HOH HOH . W 6 HOH A 21 621 60 HOH HOH . W 6 HOH A 22 622 62 HOH HOH . W 6 HOH A 23 623 63 HOH HOH . W 6 HOH A 24 624 65 HOH HOH . W 6 HOH A 25 625 66 HOH HOH . W 6 HOH A 26 626 67 HOH HOH . W 6 HOH A 27 627 69 HOH HOH . W 6 HOH A 28 628 72 HOH HOH . W 6 HOH A 29 629 75 HOH HOH . W 6 HOH A 30 630 79 HOH HOH . W 6 HOH A 31 631 83 HOH HOH . W 6 HOH A 32 632 91 HOH HOH . W 6 HOH A 33 633 94 HOH HOH . W 6 HOH A 34 634 95 HOH HOH . W 6 HOH A 35 635 97 HOH HOH . W 6 HOH A 36 636 99 HOH HOH . X 6 HOH B 1 701 8 HOH HOH . X 6 HOH B 2 702 1 HOH HOH . X 6 HOH B 3 703 2 HOH HOH . X 6 HOH B 4 704 3 HOH HOH . X 6 HOH B 5 705 4 HOH HOH . X 6 HOH B 6 706 5 HOH HOH . X 6 HOH B 7 707 6 HOH HOH . X 6 HOH B 8 708 7 HOH HOH . X 6 HOH B 9 709 10 HOH HOH . X 6 HOH B 10 710 11 HOH HOH . X 6 HOH B 11 711 12 HOH HOH . X 6 HOH B 12 712 13 HOH HOH . X 6 HOH B 13 713 14 HOH HOH . X 6 HOH B 14 714 15 HOH HOH . X 6 HOH B 15 715 22 HOH HOH . X 6 HOH B 16 716 23 HOH HOH . X 6 HOH B 17 717 25 HOH HOH . X 6 HOH B 18 718 26 HOH HOH . X 6 HOH B 19 719 27 HOH HOH . X 6 HOH B 20 720 29 HOH HOH . X 6 HOH B 21 721 30 HOH HOH . X 6 HOH B 22 722 31 HOH HOH . X 6 HOH B 23 723 34 HOH HOH . X 6 HOH B 24 724 36 HOH HOH . X 6 HOH B 25 725 39 HOH HOH . X 6 HOH B 26 726 40 HOH HOH . X 6 HOH B 27 727 41 HOH HOH . X 6 HOH B 28 728 42 HOH HOH . X 6 HOH B 29 729 43 HOH HOH . X 6 HOH B 30 730 45 HOH HOH . X 6 HOH B 31 731 46 HOH HOH . X 6 HOH B 32 732 49 HOH HOH . X 6 HOH B 33 733 50 HOH HOH . X 6 HOH B 34 734 51 HOH HOH . X 6 HOH B 35 735 53 HOH HOH . X 6 HOH B 36 736 55 HOH HOH . X 6 HOH B 37 737 57 HOH HOH . X 6 HOH B 38 738 59 HOH HOH . X 6 HOH B 39 739 61 HOH HOH . X 6 HOH B 40 740 64 HOH HOH . X 6 HOH B 41 741 68 HOH HOH . X 6 HOH B 42 742 70 HOH HOH . X 6 HOH B 43 743 71 HOH HOH . X 6 HOH B 44 744 73 HOH HOH . X 6 HOH B 45 745 74 HOH HOH . X 6 HOH B 46 746 76 HOH HOH . X 6 HOH B 47 747 77 HOH HOH . X 6 HOH B 48 748 78 HOH HOH . X 6 HOH B 49 749 80 HOH HOH . X 6 HOH B 50 750 81 HOH HOH . X 6 HOH B 51 751 82 HOH HOH . X 6 HOH B 52 752 84 HOH HOH . X 6 HOH B 53 753 85 HOH HOH . X 6 HOH B 54 754 86 HOH HOH . X 6 HOH B 55 755 87 HOH HOH . X 6 HOH B 56 756 88 HOH HOH . X 6 HOH B 57 757 89 HOH HOH . X 6 HOH B 58 758 90 HOH HOH . X 6 HOH B 59 759 92 HOH HOH . X 6 HOH B 60 760 93 HOH HOH . X 6 HOH B 61 761 96 HOH HOH . X 6 HOH B 62 762 98 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 DXC . . . N 4 0.183 3.174 180.501 0.5 77.86 ? C1 DXC 603 B 1 HETATM 2 C C2 DXC . . . N 4 -0.118 3.318 181.992 0.5 74.58 ? C2 DXC 603 B 1 HETATM 3 C C3 DXC . . . N 4 0.386 4.704 182.418 0.5 72.34 ? C3 DXC 603 B 1 HETATM 4 C C4 DXC . . . N 4 1.899 4.765 182.336 0.5 71.82 ? C4 DXC 603 B 1 HETATM 5 C C5 DXC . . . N 4 2.255 4.641 180.87 0.5 73.76 ? C5 DXC 603 B 1 HETATM 6 C C6 DXC . . . N 4 1.69 3.339 180.334 0.5 77.73 ? C6 DXC 603 B 1 HETATM 7 C C7 DXC . . . N 4 0.012 5.082 183.839 0.5 69.09 ? C7 DXC 603 B 1 HETATM 8 C C8 DXC . . . N 4 0.464 3.916 184.709 0.5 69.74 ? C8 DXC 603 B 1 HETATM 9 C C9 DXC . . . N 4 1.895 3.438 184.463 0.5 71.35 ? C9 DXC 603 B 1 HETATM 10 C C10 DXC . . . N 4 2.515 3.602 183.095 0.5 72.5 ? C10 DXC 603 B 1 HETATM 11 C C11 DXC . . . N 4 2.144 1.939 184.51 0.5 74.26 ? C11 DXC 603 B 1 HETATM 12 C C12 DXC . . . N 4 3.47 1.953 185.141 0.5 73.69 ? C12 DXC 603 B 1 HETATM 13 C C13 DXC . . . N 4 4.573 2.528 184.277 0.5 73.11 ? C13 DXC 603 B 1 HETATM 14 C C14 DXC . . . N 4 4.04 3.623 183.316 0.5 71.97 ? C14 DXC 603 B 1 HETATM 15 C C15 DXC . . . N 4 1.22 0.99 185.259 0.5 75.34 ? C15 DXC 603 B 1 HETATM 16 C C16 DXC . . . N 4 2.174 0.138 186.069 0.5 77.93 ? C16 DXC 603 B 1 HETATM 17 C C17 DXC . . . N 4 3.581 0.47 185.566 0.5 78 ? C17 DXC 603 B 1 HETATM 18 C C18 DXC . . . N 4 2.318 6.094 182.964 0.5 66.67 ? C18 DXC 603 B 1 HETATM 19 C C19 DXC . . . N 4 4.675 0.22 186.575 0.5 78.65 ? C19 DXC 603 B 1 HETATM 20 O O1 DXC . . . N 4 5.263 1.518 183.546 0.5 73.65 ? O1 DXC 603 B 1 HETATM 21 O O2 DXC . . . N 4 -0.249 1.92 179.905 0.5 81.86 ? O2 DXC 603 B 1 HETATM 22 C C20 DXC . . . N 4 3.458 2.704 186.48 0.5 71.02 ? C20 DXC 603 B 1 HETATM 23 C C21 DXC . . . N 4 4.476 -1.128 187.233 0.5 82.57 ? C21 DXC 603 B 1 HETATM 24 C C22 DXC . . . N 4 3.48 -0.998 188.379 0.5 81.46 ? C22 DXC 603 B 1 HETATM 25 C C23 DXC . . . N 4 4.223 -0.996 189.696 0.5 82.7 ? C23 DXC 603 B 1 HETATM 26 O O3 DXC . . . N 4 5.425 -0.674 189.689 0.5 84.51 ? O3 DXC 603 B 1 HETATM 27 O O4 DXC . . . N 4 3.635 -1.309 190.759 0.5 84.09 ? O4 DXC 603 B 1 HETATM 28 C C24 DXC . . . N 4 6.011 0.287 185.868 0.5 80.12 ? C24 DXC 603 B 1 # _model_server_stats.io_time_ms 19 _model_server_stats.parse_time_ms 13 _model_server_stats.create_model_time_ms 37 _model_server_stats.query_time_ms 295 _model_server_stats.encode_time_ms 5 _model_server_stats.element_count 28 #