data_4QNB # _model_server_result.job_id MoaLsdsjiSWgoAYatVBJfg _model_server_result.datetime_utc '2024-11-30 09:46:05' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 4qnb # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"B","auth_seq_id":301}' # _entry.id 4QNB # _exptl.entry_id 4QNB _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 425.522 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description N-METHYL-NALPHA-[(2-METHYL-1H-INDOL-3-YL)ACETYL]-N-PHENYL-L-PHENYLALANINAMIDE _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 4QNB _cell.length_a 91.383 _cell.length_b 91.383 _cell.length_c 56.587 _cell.Z_PDB 6 _cell.pdbx_unique_axis ? # _symmetry.entry_id 4QNB _symmetry.cell_setting ? _symmetry.Int_Tables_number 168 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 6' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details hexameric _pdbx_struct_assembly.oligomeric_count 6 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2,3,4,5,6 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 2_555 -y,x-y,z -0.5 -0.866025 0 0.866025 -0.5 0 0 0 1 0 0 0 3 'crystal symmetry operation' 3_555 -x+y,-x,z -0.5 0.866025 0 -0.866025 -0.5 0 0 0 1 0 0 0 4 'crystal symmetry operation' 4_555 -x,-y,z -1 0 0 0 -1 0 0 0 1 0 0 0 5 'crystal symmetry operation' 5_555 y,-x+y,z 0.5 0.866025 0 -0.866025 0.5 0 0 0 1 0 0 0 6 'crystal symmetry operation' 6_555 x-y,x,z 0.5 -0.866025 0 0.866025 0.5 0 0 0 1 0 0 0 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id B _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _struct_conn.conn_type_id disulf _struct_conn.details ? _struct_conn.id disulf1 _struct_conn.ptnr1_label_asym_id A _struct_conn.ptnr1_label_atom_id SG _struct_conn.ptnr1_label_comp_id CYS _struct_conn.ptnr1_label_seq_id 14 _struct_conn.ptnr1_auth_asym_id A _struct_conn.ptnr1_auth_comp_id CYS _struct_conn.ptnr1_auth_seq_id 14 _struct_conn.ptnr1_symmetry 1_555 _struct_conn.ptnr2_label_asym_id A _struct_conn.ptnr2_label_atom_id SG _struct_conn.ptnr2_label_comp_id CYS _struct_conn.ptnr2_label_seq_id 45 _struct_conn.ptnr2_auth_asym_id A _struct_conn.ptnr2_auth_comp_id CYS _struct_conn.ptnr2_auth_seq_id 45 _struct_conn.ptnr2_symmetry 6_555 _struct_conn.pdbx_ptnr1_PDB_ins_code ? _struct_conn.pdbx_ptnr1_label_alt_id ? _struct_conn.pdbx_ptnr1_standard_comp_id ? _struct_conn.pdbx_ptnr2_PDB_ins_code ? _struct_conn.pdbx_ptnr2_label_alt_id ? _struct_conn.pdbx_ptnr3_PDB_ins_code ? _struct_conn.pdbx_ptnr3_label_alt_id ? _struct_conn.pdbx_ptnr3_label_asym_id ? _struct_conn.pdbx_ptnr3_label_atom_id ? _struct_conn.pdbx_ptnr3_label_comp_id ? _struct_conn.pdbx_ptnr3_label_seq_id ? _struct_conn.pdbx_PDB_id ? _struct_conn.pdbx_dist_value 2.064 _struct_conn.pdbx_value_order ? # _chem_comp.formula 'C27 H27 N3 O2' _chem_comp.formula_weight 425.522 _chem_comp.id 1B0 _chem_comp.mon_nstd_flag . _chem_comp.name N-METHYL-NALPHA-[(2-METHYL-1H-INDOL-3-YL)ACETYL]-N-PHENYL-L-PHENYLALANINAMIDE _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag O24 C23 1B0 doub 1 n n C23 N4 1B0 sing 2 n n C23 C25 1B0 sing 3 n n N4 C5 1B0 sing 4 n n C5 C13 1B0 sing 5 n n C5 C6 1B0 sing 6 n n C13 N15 1B0 sing 7 n n C13 O14 1B0 doub 8 n n N15 C17 1B0 sing 9 n n N15 C16 1B0 sing 10 n n C17 C22 1B0 sing 11 n y C17 C18 1B0 doub 12 n y C22 C21 1B0 doub 13 n y C21 C20 1B0 sing 14 n y C20 C19 1B0 doub 15 n y C19 C18 1B0 sing 16 n y C6 C7 1B0 sing 17 n n C7 C12 1B0 sing 18 n y C7 C8 1B0 doub 19 n y C12 C11 1B0 doub 20 n y C11 C10 1B0 sing 21 n y C10 C9 1B0 doub 22 n y C9 C8 1B0 sing 23 n y C25 C1 1B0 sing 24 n n C1 C26 1B0 sing 25 n y C1 C2 1B0 doub 26 n y C26 C31 1B0 sing 27 n y C26 C27 1B0 doub 28 n y C31 C30 1B0 doub 29 n y C30 C29 1B0 sing 30 n y C29 C28 1B0 doub 31 n y C28 C27 1B0 sing 32 n y C27 N3 1B0 sing 33 n y N3 C2 1B0 sing 34 n y C2 C32 1B0 sing 35 n n N4 H4 1B0 sing 36 n n C25 H251 1B0 sing 37 n n C25 H252 1B0 sing 38 n n C5 H5 1B0 sing 39 n n C6 H61C 1B0 sing 40 n n C6 H62C 1B0 sing 41 n n C16 H161 1B0 sing 42 n n C16 H162 1B0 sing 43 n n C16 H163 1B0 sing 44 n n C22 H22 1B0 sing 45 n n C18 H18 1B0 sing 46 n n C21 H21 1B0 sing 47 n n C20 H20 1B0 sing 48 n n C19 H19 1B0 sing 49 n n C12 H12 1B0 sing 50 n n C8 H8 1B0 sing 51 n n C11 H11 1B0 sing 52 n n C10 H10 1B0 sing 53 n n C9 H9 1B0 sing 54 n n C31 H31 1B0 sing 55 n n C30 H30 1B0 sing 56 n n C29 H29 1B0 sing 57 n n C28 H28 1B0 sing 58 n n N3 H3 1B0 sing 59 n n C32 H321 1B0 sing 60 n n C32 H322 1B0 sing 61 n n C32 H323 1B0 sing 62 n n # _atom_sites.entry_id 4QNB _atom_sites.fract_transf_matrix[1][1] 0.010943 _atom_sites.fract_transf_matrix[1][2] 0.006318 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.012636 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.017672 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 1B0 A 1 301 1148 1B0 1B0 . C 3 HOH A 1 401 233 HOH HOH . C 3 HOH A 2 402 234 HOH HOH . C 3 HOH A 3 403 235 HOH HOH . C 3 HOH A 4 404 236 HOH HOH . C 3 HOH A 5 405 237 HOH HOH . C 3 HOH A 6 406 238 HOH HOH . C 3 HOH A 7 407 239 HOH HOH . C 3 HOH A 8 408 240 HOH HOH . C 3 HOH A 9 409 241 HOH HOH . C 3 HOH A 10 410 242 HOH HOH . C 3 HOH A 11 411 243 HOH HOH . C 3 HOH A 12 412 244 HOH HOH . C 3 HOH A 13 413 245 HOH HOH . C 3 HOH A 14 414 246 HOH HOH . C 3 HOH A 15 415 248 HOH HOH . C 3 HOH A 16 416 249 HOH HOH . C 3 HOH A 17 417 250 HOH HOH . C 3 HOH A 18 418 251 HOH HOH . C 3 HOH A 19 419 252 HOH HOH . C 3 HOH A 20 420 253 HOH HOH . C 3 HOH A 21 421 256 HOH HOH . C 3 HOH A 22 422 257 HOH HOH . C 3 HOH A 23 423 259 HOH HOH . C 3 HOH A 24 424 260 HOH HOH . C 3 HOH A 25 425 261 HOH HOH . C 3 HOH A 26 426 263 HOH HOH . C 3 HOH A 27 427 266 HOH HOH . C 3 HOH A 28 428 268 HOH HOH . C 3 HOH A 29 429 270 HOH HOH . C 3 HOH A 30 430 271 HOH HOH . C 3 HOH A 31 431 272 HOH HOH . C 3 HOH A 32 432 275 HOH HOH . C 3 HOH A 33 433 276 HOH HOH . C 3 HOH A 34 434 282 HOH HOH . C 3 HOH A 35 435 292 HOH HOH . C 3 HOH A 36 436 294 HOH HOH . C 3 HOH A 37 437 298 HOH HOH . C 3 HOH A 38 438 306 HOH HOH . C 3 HOH A 39 439 315 HOH HOH . C 3 HOH A 40 440 318 HOH HOH . C 3 HOH A 41 441 321 HOH HOH . C 3 HOH A 42 442 332 HOH HOH . C 3 HOH A 43 443 345 HOH HOH . C 3 HOH A 44 444 346 HOH HOH . C 3 HOH A 45 445 347 HOH HOH . C 3 HOH A 46 446 352 HOH HOH . C 3 HOH A 47 447 353 HOH HOH . C 3 HOH A 48 448 354 HOH HOH . C 3 HOH A 49 449 355 HOH HOH . C 3 HOH A 50 450 363 HOH HOH . C 3 HOH A 51 451 365 HOH HOH . C 3 HOH A 52 452 366 HOH HOH . C 3 HOH A 53 453 367 HOH HOH . C 3 HOH A 54 454 368 HOH HOH . C 3 HOH A 55 455 369 HOH HOH . C 3 HOH A 56 456 370 HOH HOH . C 3 HOH A 57 457 371 HOH HOH . C 3 HOH A 58 458 374 HOH HOH . C 3 HOH A 59 459 375 HOH HOH . C 3 HOH A 60 460 377 HOH HOH . C 3 HOH A 61 461 378 HOH HOH . C 3 HOH A 62 462 379 HOH HOH . C 3 HOH A 63 463 380 HOH HOH . C 3 HOH A 64 464 381 HOH HOH . C 3 HOH A 65 465 382 HOH HOH . C 3 HOH A 66 466 383 HOH HOH . C 3 HOH A 67 467 384 HOH HOH . C 3 HOH A 68 468 385 HOH HOH . C 3 HOH A 69 469 386 HOH HOH . C 3 HOH A 70 470 387 HOH HOH . C 3 HOH A 71 471 388 HOH HOH . C 3 HOH A 72 472 389 HOH HOH . C 3 HOH A 73 473 390 HOH HOH . C 3 HOH A 74 474 391 HOH HOH . C 3 HOH A 75 475 392 HOH HOH . C 3 HOH A 76 476 393 HOH HOH . C 3 HOH A 77 477 394 HOH HOH . C 3 HOH A 78 478 395 HOH HOH . C 3 HOH A 79 479 396 HOH HOH . C 3 HOH A 80 480 397 HOH HOH . C 3 HOH A 81 481 398 HOH HOH . C 3 HOH A 82 482 399 HOH HOH . C 3 HOH A 83 483 400 HOH HOH . C 3 HOH A 84 484 401 HOH HOH . C 3 HOH A 85 485 402 HOH HOH . C 3 HOH A 86 486 403 HOH HOH . C 3 HOH A 87 487 404 HOH HOH . C 3 HOH A 88 488 405 HOH HOH . C 3 HOH A 89 489 406 HOH HOH . C 3 HOH A 90 490 407 HOH HOH . C 3 HOH A 91 491 408 HOH HOH . C 3 HOH A 92 492 409 HOH HOH . C 3 HOH A 93 493 410 HOH HOH . C 3 HOH A 94 494 411 HOH HOH . C 3 HOH A 95 495 412 HOH HOH . C 3 HOH A 96 496 413 HOH HOH . C 3 HOH A 97 497 414 HOH HOH . C 3 HOH A 98 498 416 HOH HOH . C 3 HOH A 99 499 417 HOH HOH . C 3 HOH A 100 500 418 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 O O24 1B0 . . . B 2 16.149 26.725 -0.227 1 26.22 ? O24 1B0 301 A 1 HETATM 2 C C23 1B0 . . . B 2 15.304 25.902 -0.02 1 26.4 ? C23 1B0 301 A 1 HETATM 3 N N4 1B0 . . . B 2 15.225 24.695 -0.783 1 25.14 ? N4 1B0 301 A 1 HETATM 4 C C5 1B0 . . . B 2 16.121 24.407 -1.852 1 23.37 ? C5 1B0 301 A 1 HETATM 5 C C13 1B0 . . . B 2 15.485 24.9 -3.135 1 25.73 ? C13 1B0 301 A 1 HETATM 6 N N15 1B0 . . . B 2 16.277 25.489 -4.212 1 27.1 ? N15 1B0 301 A 1 HETATM 7 C C17 1B0 . . . B 2 17.723 25.617 -4.002 1 28.59 ? C17 1B0 301 A 1 HETATM 8 C C22 1B0 . . . B 2 18.578 24.624 -4.466 1 26.51 ? C22 1B0 301 A 1 HETATM 9 C C21 1B0 . . . B 2 19.956 24.733 -4.238 1 27.91 ? C21 1B0 301 A 1 HETATM 10 C C20 1B0 . . . B 2 20.456 25.831 -3.557 1 29.99 ? C20 1B0 301 A 1 HETATM 11 C C19 1B0 . . . B 2 19.598 26.823 -3.086 1 30 ? C19 1B0 301 A 1 HETATM 12 C C18 1B0 . . . B 2 18.227 26.721 -3.306 1 29.2 ? C18 1B0 301 A 1 HETATM 13 C C16 1B0 . . . B 2 15.615 25.929 -5.46 1 29.84 ? C16 1B0 301 A 1 HETATM 14 O O14 1B0 . . . B 2 14.308 24.778 -3.276 1 27.63 ? O14 1B0 301 A 1 HETATM 15 C C6 1B0 . . . B 2 16.314 22.898 -2.033 1 22.29 ? C6 1B0 301 A 1 HETATM 16 C C7 1B0 . . . B 2 17.248 22.447 -0.92 1 22.61 ? C7 1B0 301 A 1 HETATM 17 C C12 1B0 . . . B 2 18.627 22.477 -1.112 1 24.28 ? C12 1B0 301 A 1 HETATM 18 C C11 1B0 . . . B 2 19.468 22.087 -0.071 1 24.9 ? C11 1B0 301 A 1 HETATM 19 C C10 1B0 . . . B 2 18.929 21.696 1.15 1 23.07 ? C10 1B0 301 A 1 HETATM 20 C C9 1B0 . . . B 2 17.547 21.687 1.334 1 21.29 ? C9 1B0 301 A 1 HETATM 21 C C8 1B0 . . . B 2 16.716 22.073 0.3 1 21.02 ? C8 1B0 301 A 1 HETATM 22 C C25 1B0 . . . B 2 14.247 26.154 1.097 1 27.82 ? C25 1B0 301 A 1 HETATM 23 C C1 1B0 . . . B 2 14.863 26.302 2.484 1 26.3 ? C1 1B0 301 A 1 HETATM 24 C C26 1B0 . . . B 2 15.178 27.479 3.176 1 24.8 ? C26 1B0 301 A 1 HETATM 25 C C31 1B0 . . . B 2 15.051 28.832 2.83 1 27.08 ? C31 1B0 301 A 1 HETATM 26 C C30 1B0 . . . B 2 15.436 29.809 3.726 1 30.53 ? C30 1B0 301 A 1 HETATM 27 C C29 1B0 . . . B 2 15.945 29.455 4.975 1 28.76 ? C29 1B0 301 A 1 HETATM 28 C C28 1B0 . . . B 2 16.079 28.125 5.306 1 25.23 ? C28 1B0 301 A 1 HETATM 29 C C27 1B0 . . . B 2 15.674 27.132 4.399 1 24.35 ? C27 1B0 301 A 1 HETATM 30 N N3 1B0 . . . B 2 15.682 25.735 4.474 1 23.13 ? N3 1B0 301 A 1 HETATM 31 C C2 1B0 . . . B 2 15.177 25.236 3.276 1 25.46 ? C2 1B0 301 A 1 HETATM 32 C C32 1B0 . . . B 2 15.218 23.723 3.428 1 25.52 ? C32 1B0 301 A 1 HETATM 33 H H4 1B0 . . . B 2 14.555 24.109 -0.604 1 30.17 ? H4 1B0 301 A 1 HETATM 34 H H251 1B0 . . . B 2 13.752 26.98 0.888 1 33.38 ? H251 1B0 301 A 1 HETATM 35 H H252 1B0 . . . B 2 13.623 25.411 1.105 1 33.38 ? H252 1B0 301 A 1 HETATM 36 H H5 1B0 . . . B 2 17.006 24.86 -1.703 1 28.05 ? H5 1B0 301 A 1 HETATM 37 H H61C 1B0 . . . B 2 16.718 22.724 -2.897 1 26.75 ? H61C 1B0 301 A 1 HETATM 38 H H62C 1B0 . . . B 2 15.442 22.436 -1.958 1 26.75 ? H62C 1B0 301 A 1 HETATM 39 H H161 1B0 . . . B 2 15.018 26.701 -5.264 1 35.81 ? H161 1B0 301 A 1 HETATM 40 H H162 1B0 . . . B 2 15.076 25.18 -5.835 1 35.81 ? H162 1B0 301 A 1 HETATM 41 H H163 1B0 . . . B 2 16.305 26.203 -6.122 1 35.81 ? H163 1B0 301 A 1 HETATM 42 H H22 1B0 . . . B 2 18.215 23.839 -4.949 1 31.81 ? H22 1B0 301 A 1 HETATM 43 H H18 1B0 . . . B 2 17.624 27.414 -2.974 1 35.04 ? H18 1B0 301 A 1 HETATM 44 H H21 1B0 . . . B 2 20.575 24.031 -4.575 1 33.49 ? H21 1B0 301 A 1 HETATM 45 H H20 1B0 . . . B 2 21.434 25.913 -3.403 1 35.99 ? H20 1B0 301 A 1 HETATM 46 H H19 1B0 . . . B 2 19.96 27.596 -2.608 1 36.01 ? H19 1B0 301 A 1 HETATM 47 H H12 1B0 . . . B 2 19.022 22.77 -2.022 1 29.14 ? H12 1B0 301 A 1 HETATM 48 H H8 1B0 . . . B 2 15.746 22.069 0.427 1 25.23 ? H8 1B0 301 A 1 HETATM 49 H H11 1B0 . . . B 2 20.446 22.09 -0.199 1 29.88 ? H11 1B0 301 A 1 HETATM 50 H H10 1B0 . . . B 2 19.54 21.409 1.904 1 27.69 ? H10 1B0 301 A 1 HETATM 51 H H9 1B0 . . . B 2 17.152 21.398 2.224 1 25.55 ? H9 1B0 301 A 1 HETATM 52 H H31 1B0 . . . B 2 14.681 29.08 1.972 1 32.5 ? H31 1B0 301 A 1 HETATM 53 H H30 1B0 . . . B 2 15.347 30.764 3.482 1 36.64 ? H30 1B0 301 A 1 HETATM 54 H H29 1B0 . . . B 2 16.235 30.15 5.604 1 34.51 ? H29 1B0 301 A 1 HETATM 55 H H28 1B0 . . . B 2 16.447 27.869 6.188 1 30.28 ? H28 1B0 301 A 1 HETATM 56 H H3 1B0 . . . B 2 15.984 25.231 5.192 1 27.76 ? H3 1B0 301 A 1 HETATM 57 H H321 1B0 . . . B 2 15.538 23.326 2.608 1 30.62 ? H321 1B0 301 A 1 HETATM 58 H H322 1B0 . . . B 2 15.836 23.478 4.184 1 30.62 ? H322 1B0 301 A 1 HETATM 59 H H323 1B0 . . . B 2 14.311 23.386 3.623 1 30.62 ? H323 1B0 301 A 1 # _model_server_stats.io_time_ms 10 _model_server_stats.parse_time_ms 14 _model_server_stats.create_model_time_ms 14 _model_server_stats.query_time_ms 301 _model_server_stats.encode_time_ms 14 _model_server_stats.element_count 59 #