data_4QND
#
_model_server_result.job_id            U1j2Yv3yVQEe0b9fcGJlEA 
_model_server_result.datetime_utc      '2024-11-22 23:52:42' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          4qnd 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"D","auth_seq_id":103}' 
#
_entry.id    4QND 
#
_exptl.entry_id    4QND 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              356.54 
_entity.id                          3 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            '(2R)-2,3-dihydroxypropyl (9Z)-octadec-9-enoate' 
_entity.pdbx_number_of_molecules    3 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            4QND 
_cell.length_a            58.236 
_cell.length_b            58.236 
_cell.length_c            172.923 
_cell.Z_PDB               16 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 4QND 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        98 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'I 41 2 2' 
#
loop_
_pdbx_struct_assembly.method_details
_pdbx_struct_assembly.oligomeric_details
_pdbx_struct_assembly.oligomeric_count
_pdbx_struct_assembly.details
_pdbx_struct_assembly.id
PISA dimeric 2 author_and_software_defined_assembly 1 
PISA dimeric 2 software_defined_assembly 2 
#
loop_
_pdbx_struct_assembly_gen.asym_id_list
_pdbx_struct_assembly_gen.assembly_id
_pdbx_struct_assembly_gen.oper_expression
A,B,C,D,E,F,G,H 1 1,2 
A,B,C,D,E,F,G,H 2 1,3 
#
loop_
_pdbx_struct_oper_list.id
_pdbx_struct_oper_list.type
_pdbx_struct_oper_list.name
_pdbx_struct_oper_list.symmetry_operation
_pdbx_struct_oper_list.matrix[1][1]
_pdbx_struct_oper_list.matrix[1][2]
_pdbx_struct_oper_list.matrix[1][3]
_pdbx_struct_oper_list.matrix[2][1]
_pdbx_struct_oper_list.matrix[2][2]
_pdbx_struct_oper_list.matrix[2][3]
_pdbx_struct_oper_list.matrix[3][1]
_pdbx_struct_oper_list.matrix[3][2]
_pdbx_struct_oper_list.matrix[3][3]
_pdbx_struct_oper_list.vector[1]
_pdbx_struct_oper_list.vector[2]
_pdbx_struct_oper_list.vector[3]
1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 
2 'crystal symmetry operation' 10_665 -x+1,-y+1,z -1 0 0 0 -1 0 0 0 1 58.236 58.236 0 
3 'crystal symmetry operation' 5_555 -x+1/2,y,-z+3/4 -1 0 0 0 1 0 0 0 -1 29.118 0 129.69225 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 3 D N N 
? 3 E N N 
? 3 F N N 
#
_chem_comp.formula           'C21 H40 O4' 
_chem_comp.formula_weight    356.54 
_chem_comp.id                OLC 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              '(2R)-2,3-dihydroxypropyl (9Z)-octadec-9-enoate' 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     1-Oleoyl-R-glycerol 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
C18 C17 OLC sing 268 n n 
C10 C9 OLC doub 269 n n 
C10 C11 OLC sing 270 n n 
C9 C8 OLC sing 271 n n 
C17 C16 OLC sing 272 z n 
C11 C12 OLC sing 273 n n 
C8 C7 OLC sing 274 n n 
C24 C22 OLC sing 275 n n 
C24 O25 OLC sing 276 n n 
C16 C15 OLC sing 277 n n 
C12 C13 OLC sing 278 n n 
C7 C6 OLC sing 279 n n 
C15 C14 OLC sing 280 n n 
C13 C14 OLC sing 281 n n 
C6 C5 OLC sing 282 n n 
C5 C4 OLC sing 283 n n 
C4 C3 OLC sing 284 n n 
C3 C2 OLC sing 285 n n 
C2 C1 OLC sing 286 n n 
C21 C22 OLC sing 287 n n 
C21 O20 OLC sing 288 n n 
C1 O19 OLC doub 289 n n 
C1 O20 OLC sing 290 n n 
C22 O23 OLC sing 291 n n 
C18 H18 OLC sing 292 n n 
C18 H18A OLC sing 293 n n 
C18 H18B OLC sing 294 n n 
C10 H10 OLC sing 295 n n 
C9 H9 OLC sing 296 n n 
C17 H17 OLC sing 297 n n 
C17 H17A OLC sing 298 n n 
C11 H11 OLC sing 299 n n 
C11 H11A OLC sing 300 n n 
C8 H8 OLC sing 301 n n 
C8 H8A OLC sing 302 n n 
C24 H24 OLC sing 303 n n 
C24 H24A OLC sing 304 n n 
C16 H16 OLC sing 305 n n 
C16 H16A OLC sing 306 n n 
C12 H12 OLC sing 307 n n 
C12 H12A OLC sing 308 n n 
C7 H7 OLC sing 309 n n 
C7 H7A OLC sing 310 n n 
C15 H15 OLC sing 311 n n 
C15 H15A OLC sing 312 n n 
C13 H13 OLC sing 313 n n 
C13 H13A OLC sing 314 n n 
C6 H6 OLC sing 315 n n 
C6 H6A OLC sing 316 n n 
C14 H14 OLC sing 317 n n 
C14 H14A OLC sing 318 n n 
C5 H5 OLC sing 319 n n 
C5 H5A OLC sing 320 n n 
C4 H4 OLC sing 321 n n 
C4 H4A OLC sing 322 n n 
C3 H3 OLC sing 323 n n 
C3 H3A OLC sing 324 n n 
C2 H2 OLC sing 325 n n 
C2 H2A OLC sing 326 n n 
C21 H21 OLC sing 327 n n 
C21 H21A OLC sing 328 n n 
C22 H22 OLC sing 329 n n 
O25 HO25 OLC sing 330 n n 
O23 HO23 OLC sing 331 n n 
#
_atom_sites.entry_id                     4QND 
_atom_sites.fract_transf_matrix[1][1]    0.017172 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.017172 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.005783 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
B 2 MYS A 1 101 714 MYS MYS . 
C 2 MYS A 1 102 715 MYS MYS . 
D 3 OLC A 1 103 710 OLC OLC . 
E 3 OLC A 1 104 711 OLC OLC . 
F 3 OLC A 1 105 712 OLC OLC . 
G 4 PE5 A 1 106 302 PE5 PE5 . 
H 5 HOH A 1 201 1 HOH HOH . 
H 5 HOH A 2 202 2 HOH HOH . 
H 5 HOH A 3 203 3 HOH HOH . 
H 5 HOH A 4 204 4 HOH HOH . 
H 5 HOH A 5 205 5 HOH HOH . 
H 5 HOH A 6 206 6 HOH HOH . 
H 5 HOH A 7 207 7 HOH HOH . 
H 5 HOH A 8 208 8 HOH HOH . 
H 5 HOH A 9 209 9 HOH HOH . 
H 5 HOH A 10 210 10 HOH HOH . 
H 5 HOH A 11 211 11 HOH HOH . 
H 5 HOH A 12 212 12 HOH HOH . 
H 5 HOH A 13 213 13 HOH HOH . 
H 5 HOH A 14 214 14 HOH HOH . 
H 5 HOH A 15 215 15 HOH HOH . 
H 5 HOH A 16 216 16 HOH HOH . 
H 5 HOH A 17 217 17 HOH HOH . 
H 5 HOH A 18 218 18 HOH HOH . 
H 5 HOH A 19 219 19 HOH HOH . 
H 5 HOH A 20 220 20 HOH HOH . 
H 5 HOH A 21 221 21 HOH HOH . 
H 5 HOH A 22 222 22 HOH HOH . 
H 5 HOH A 23 223 23 HOH HOH . 
H 5 HOH A 24 224 24 HOH HOH . 
H 5 HOH A 25 225 25 HOH HOH . 
H 5 HOH A 26 226 26 HOH HOH . 
H 5 HOH A 27 227 28 HOH HOH . 
H 5 HOH A 28 228 29 HOH HOH . 
H 5 HOH A 29 229 30 HOH HOH . 
H 5 HOH A 30 230 31 HOH HOH . 
H 5 HOH A 31 231 32 HOH HOH . 
H 5 HOH A 32 232 33 HOH HOH . 
H 5 HOH A 33 233 35 HOH HOH . 
H 5 HOH A 34 234 36 HOH HOH . 
H 5 HOH A 35 235 37 HOH HOH . 
H 5 HOH A 36 236 38 HOH HOH . 
H 5 HOH A 37 237 39 HOH HOH . 
H 5 HOH A 38 238 40 HOH HOH . 
H 5 HOH A 39 239 41 HOH HOH . 
H 5 HOH A 40 240 43 HOH HOH . 
H 5 HOH A 41 241 44 HOH HOH . 
H 5 HOH A 42 242 45 HOH HOH . 
H 5 HOH A 43 243 46 HOH HOH . 
H 5 HOH A 44 244 49 HOH HOH . 
H 5 HOH A 45 245 50 HOH HOH . 
H 5 HOH A 46 246 51 HOH HOH . 
H 5 HOH A 47 247 52 HOH HOH . 
H 5 HOH A 48 248 53 HOH HOH . 
H 5 HOH A 49 249 55 HOH HOH . 
H 5 HOH A 50 250 56 HOH HOH . 
H 5 HOH A 51 251 58 HOH HOH . 
H 5 HOH A 52 252 59 HOH HOH . 
H 5 HOH A 53 253 60 HOH HOH . 
H 5 HOH A 54 254 62 HOH HOH . 
H 5 HOH A 55 255 63 HOH HOH . 
H 5 HOH A 56 256 64 HOH HOH . 
H 5 HOH A 57 257 66 HOH HOH . 
H 5 HOH A 58 258 67 HOH HOH . 
H 5 HOH A 59 259 68 HOH HOH . 
H 5 HOH A 60 260 69 HOH HOH . 
H 5 HOH A 61 261 70 HOH HOH . 
H 5 HOH A 62 262 71 HOH HOH . 
H 5 HOH A 63 263 72 HOH HOH . 
H 5 HOH A 64 264 74 HOH HOH . 
H 5 HOH A 65 265 76 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C C18 OLC . . . D 3 10.472 16.119 56.205 1 44.23 ? C18 OLC 103 A 1 
HETATM 2 C C10 OLC . . . D 3 15.556 19.158 62.497 1 63.5 ? C10 OLC 103 A 1 
HETATM 3 C C9 OLC . . . D 3 16.395 19.392 61.266 1 55.89 ? C9 OLC 103 A 1 
HETATM 4 C C17 OLC . . . D 3 11.01 17.347 56.904 1 43.34 ? C17 OLC 103 A 1 
HETATM 5 C C11 OLC . . . D 3 15.248 17.692 62.721 1 64.31 ? C11 OLC 103 A 1 
HETATM 6 C C8 OLC . . . D 3 16.167 20.764 60.68 1 47.85 ? C8 OLC 103 A 1 
HETATM 7 C C24 OLC . . . D 3 15.746 19.398 47.815 1 52.57 ? C24 OLC 103 A 1 
HETATM 8 C C16 OLC . . . D 3 10.913 17.231 58.41 1 44.28 ? C16 OLC 103 A 1 
HETATM 9 C C12 OLC . . . D 3 13.805 17.36 62.387 1 60.05 ? C12 OLC 103 A 1 
HETATM 10 C C7 OLC . . . D 3 16.435 20.794 59.191 1 43.99 ? C7 OLC 103 A 1 
HETATM 11 C C15 OLC . . . D 3 11.92 18.112 59.122 1 47 ? C15 OLC 103 A 1 
HETATM 12 C C13 OLC . . . D 3 13.528 17.389 60.901 1 54.4 ? C13 OLC 103 A 1 
HETATM 13 C C6 OLC . . . D 3 15.62 19.766 58.442 1 43.82 ? C6 OLC 103 A 1 
HETATM 14 C C14 OLC . . . D 3 12.097 17.742 60.579 1 45.74 ? C14 OLC 103 A 1 
HETATM 15 C C5 OLC . . . D 3 15.934 19.784 56.966 1 40.4 ? C5 OLC 103 A 1 
HETATM 16 C C4 OLC . . . D 3 14.958 20.627 56.178 1 35.89 ? C4 OLC 103 A 1 
HETATM 17 C C3 OLC . . . D 3 14.608 19.958 54.869 1 40.38 ? C3 OLC 103 A 1 
HETATM 18 C C2 OLC . . . D 3 15.143 20.72 53.679 1 40.8 ? C2 OLC 103 A 1 
HETATM 19 C C21 OLC . . . D 3 16.073 19.736 50.23 1 46.54 ? C21 OLC 103 A 1 
HETATM 20 C C1 OLC . . . D 3 15.298 19.838 52.459 1 46.53 ? C1 OLC 103 A 1 
HETATM 21 C C22 OLC . . . D 3 15.91 20.435 48.902 1 49.42 ? C22 OLC 103 A 1 
HETATM 22 O O19 OLC . . . D 3 15.527 18.651 52.588 1 53.01 ? O19 OLC 103 A 1 
HETATM 23 O O25 OLC . . . D 3 16.839 19.502 46.931 1 58.91 ? O25 OLC 103 A 1 
HETATM 24 O O23 OLC . . . D 3 14.764 21.253 48.946 1 57.96 ? O23 OLC 103 A 1 
HETATM 25 O O20 OLC . . . D 3 15.282 20.413 51.18 1 47.17 ? O20 OLC 103 A 1 
#
_model_server_stats.io_time_ms              6 
_model_server_stats.parse_time_ms           6 
_model_server_stats.create_model_time_ms    1 
_model_server_stats.query_time_ms           298 
_model_server_stats.encode_time_ms          1 
_model_server_stats.element_count           25 
#