data_4QND # _model_server_result.job_id ILCzM2y96vd3LNQbkvnipw _model_server_result.datetime_utc '2024-11-04 22:35:03' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 4qnd # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"F","auth_seq_id":105}' # _entry.id 4QND # _exptl.entry_id 4QND _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 356.54 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description '(2R)-2,3-dihydroxypropyl (9Z)-octadec-9-enoate' _entity.pdbx_number_of_molecules 3 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 4QND _cell.length_a 58.236 _cell.length_b 58.236 _cell.length_c 172.923 _cell.Z_PDB 16 _cell.pdbx_unique_axis ? # _symmetry.entry_id 4QND _symmetry.cell_setting ? _symmetry.Int_Tables_number 98 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'I 41 2 2' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id PISA dimeric 2 author_and_software_defined_assembly 1 PISA dimeric 2 software_defined_assembly 2 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,B,C,D,E,F,G,H 1 1,2 A,B,C,D,E,F,G,H 2 1,3 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 10_665 -x+1,-y+1,z -1 0 0 0 -1 0 0 0 1 58.236 58.236 0 3 'crystal symmetry operation' 5_555 -x+1/2,y,-z+3/4 -1 0 0 0 1 0 0 0 -1 29.118 0 129.69225 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 3 D N N ? 3 E N N ? 3 F N N # _chem_comp.formula 'C21 H40 O4' _chem_comp.formula_weight 356.54 _chem_comp.id OLC _chem_comp.mon_nstd_flag . _chem_comp.name '(2R)-2,3-dihydroxypropyl (9Z)-octadec-9-enoate' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms 1-Oleoyl-R-glycerol # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C18 C17 OLC sing 268 n n C10 C9 OLC doub 269 n n C10 C11 OLC sing 270 n n C9 C8 OLC sing 271 n n C17 C16 OLC sing 272 z n C11 C12 OLC sing 273 n n C8 C7 OLC sing 274 n n C24 C22 OLC sing 275 n n C24 O25 OLC sing 276 n n C16 C15 OLC sing 277 n n C12 C13 OLC sing 278 n n C7 C6 OLC sing 279 n n C15 C14 OLC sing 280 n n C13 C14 OLC sing 281 n n C6 C5 OLC sing 282 n n C5 C4 OLC sing 283 n n C4 C3 OLC sing 284 n n C3 C2 OLC sing 285 n n C2 C1 OLC sing 286 n n C21 C22 OLC sing 287 n n C21 O20 OLC sing 288 n n C1 O19 OLC doub 289 n n C1 O20 OLC sing 290 n n C22 O23 OLC sing 291 n n C18 H18 OLC sing 292 n n C18 H18A OLC sing 293 n n C18 H18B OLC sing 294 n n C10 H10 OLC sing 295 n n C9 H9 OLC sing 296 n n C17 H17 OLC sing 297 n n C17 H17A OLC sing 298 n n C11 H11 OLC sing 299 n n C11 H11A OLC sing 300 n n C8 H8 OLC sing 301 n n C8 H8A OLC sing 302 n n C24 H24 OLC sing 303 n n C24 H24A OLC sing 304 n n C16 H16 OLC sing 305 n n C16 H16A OLC sing 306 n n C12 H12 OLC sing 307 n n C12 H12A OLC sing 308 n n C7 H7 OLC sing 309 n n C7 H7A OLC sing 310 n n C15 H15 OLC sing 311 n n C15 H15A OLC sing 312 n n C13 H13 OLC sing 313 n n C13 H13A OLC sing 314 n n C6 H6 OLC sing 315 n n C6 H6A OLC sing 316 n n C14 H14 OLC sing 317 n n C14 H14A OLC sing 318 n n C5 H5 OLC sing 319 n n C5 H5A OLC sing 320 n n C4 H4 OLC sing 321 n n C4 H4A OLC sing 322 n n C3 H3 OLC sing 323 n n C3 H3A OLC sing 324 n n C2 H2 OLC sing 325 n n C2 H2A OLC sing 326 n n C21 H21 OLC sing 327 n n C21 H21A OLC sing 328 n n C22 H22 OLC sing 329 n n O25 HO25 OLC sing 330 n n O23 HO23 OLC sing 331 n n # _atom_sites.entry_id 4QND _atom_sites.fract_transf_matrix[1][1] 0.017172 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.017172 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.005783 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 MYS A 1 101 714 MYS MYS . C 2 MYS A 1 102 715 MYS MYS . D 3 OLC A 1 103 710 OLC OLC . E 3 OLC A 1 104 711 OLC OLC . F 3 OLC A 1 105 712 OLC OLC . G 4 PE5 A 1 106 302 PE5 PE5 . H 5 HOH A 1 201 1 HOH HOH . H 5 HOH A 2 202 2 HOH HOH . H 5 HOH A 3 203 3 HOH HOH . H 5 HOH A 4 204 4 HOH HOH . H 5 HOH A 5 205 5 HOH HOH . H 5 HOH A 6 206 6 HOH HOH . H 5 HOH A 7 207 7 HOH HOH . H 5 HOH A 8 208 8 HOH HOH . H 5 HOH A 9 209 9 HOH HOH . H 5 HOH A 10 210 10 HOH HOH . H 5 HOH A 11 211 11 HOH HOH . H 5 HOH A 12 212 12 HOH HOH . H 5 HOH A 13 213 13 HOH HOH . H 5 HOH A 14 214 14 HOH HOH . H 5 HOH A 15 215 15 HOH HOH . H 5 HOH A 16 216 16 HOH HOH . H 5 HOH A 17 217 17 HOH HOH . H 5 HOH A 18 218 18 HOH HOH . H 5 HOH A 19 219 19 HOH HOH . H 5 HOH A 20 220 20 HOH HOH . H 5 HOH A 21 221 21 HOH HOH . H 5 HOH A 22 222 22 HOH HOH . H 5 HOH A 23 223 23 HOH HOH . H 5 HOH A 24 224 24 HOH HOH . H 5 HOH A 25 225 25 HOH HOH . H 5 HOH A 26 226 26 HOH HOH . H 5 HOH A 27 227 28 HOH HOH . H 5 HOH A 28 228 29 HOH HOH . H 5 HOH A 29 229 30 HOH HOH . H 5 HOH A 30 230 31 HOH HOH . H 5 HOH A 31 231 32 HOH HOH . H 5 HOH A 32 232 33 HOH HOH . H 5 HOH A 33 233 35 HOH HOH . H 5 HOH A 34 234 36 HOH HOH . H 5 HOH A 35 235 37 HOH HOH . H 5 HOH A 36 236 38 HOH HOH . H 5 HOH A 37 237 39 HOH HOH . H 5 HOH A 38 238 40 HOH HOH . H 5 HOH A 39 239 41 HOH HOH . H 5 HOH A 40 240 43 HOH HOH . H 5 HOH A 41 241 44 HOH HOH . H 5 HOH A 42 242 45 HOH HOH . H 5 HOH A 43 243 46 HOH HOH . H 5 HOH A 44 244 49 HOH HOH . H 5 HOH A 45 245 50 HOH HOH . H 5 HOH A 46 246 51 HOH HOH . H 5 HOH A 47 247 52 HOH HOH . H 5 HOH A 48 248 53 HOH HOH . H 5 HOH A 49 249 55 HOH HOH . H 5 HOH A 50 250 56 HOH HOH . H 5 HOH A 51 251 58 HOH HOH . H 5 HOH A 52 252 59 HOH HOH . H 5 HOH A 53 253 60 HOH HOH . H 5 HOH A 54 254 62 HOH HOH . H 5 HOH A 55 255 63 HOH HOH . H 5 HOH A 56 256 64 HOH HOH . H 5 HOH A 57 257 66 HOH HOH . H 5 HOH A 58 258 67 HOH HOH . H 5 HOH A 59 259 68 HOH HOH . H 5 HOH A 60 260 69 HOH HOH . H 5 HOH A 61 261 70 HOH HOH . H 5 HOH A 62 262 71 HOH HOH . H 5 HOH A 63 263 72 HOH HOH . H 5 HOH A 64 264 74 HOH HOH . H 5 HOH A 65 265 76 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C18 OLC . . . F 3 25.903 14.525 65.167 1 49.56 ? C18 OLC 105 A 1 HETATM 2 C C10 OLC . . . F 3 22.509 13.865 57.063 1 54.29 ? C10 OLC 105 A 1 HETATM 3 C C9 OLC . . . F 3 21.115 13.876 56.477 1 53.26 ? C9 OLC 105 A 1 HETATM 4 C C17 OLC . . . F 3 25.307 15.778 64.563 1 43.71 ? C17 OLC 105 A 1 HETATM 5 C C11 OLC . . . F 3 22.516 13.837 58.578 1 53.93 ? C11 OLC 105 A 1 HETATM 6 C C8 OLC . . . F 3 21.155 13.936 54.966 1 52.57 ? C8 OLC 105 A 1 HETATM 7 C C24 OLC . . . F 3 23.679 12.349 48.471 1 62.74 ? C24 OLC 105 A 1 HETATM 8 C C16 OLC . . . F 3 25.241 15.72 63.053 1 42.69 ? C16 OLC 105 A 1 HETATM 9 C C12 OLC . . . F 3 22.102 15.166 59.181 1 49.06 ? C12 OLC 105 A 1 HETATM 10 C C7 OLC . . . F 3 19.783 14.007 54.326 1 50.82 ? C7 OLC 105 A 1 HETATM 11 C C15 OLC . . . F 3 23.926 15.154 62.56 1 41.7 ? C15 OLC 105 A 1 HETATM 12 C C13 OLC . . . F 3 22.267 15.186 60.682 1 44.15 ? C13 OLC 105 A 1 HETATM 13 C C6 OLC . . . F 3 19.799 14.89 53.098 1 49.88 ? C6 OLC 105 A 1 HETATM 14 C C14 OLC . . . F 3 23.695 15.446 61.094 1 40.9 ? C14 OLC 105 A 1 HETATM 15 C C5 OLC . . . F 3 18.917 14.391 51.976 1 50.97 ? C5 OLC 105 A 1 HETATM 16 C C4 OLC . . . F 3 19.19 15.131 50.683 1 48.64 ? C4 OLC 105 A 1 HETATM 17 C C3 OLC . . . F 3 18.168 14.838 49.606 1 58.61 ? C3 OLC 105 A 1 HETATM 18 C C2 OLC . . . F 3 18.654 13.842 48.579 1 63.5 ? C2 OLC 105 A 1 HETATM 19 C C21 OLC . . . F 3 21.577 13.64 48.479 1 65.91 ? C21 OLC 105 A 1 HETATM 20 C C1 OLC . . . F 3 19.575 14.476 47.559 1 69.32 ? C1 OLC 105 A 1 HETATM 21 C C22 OLC . . . F 3 22.172 12.254 48.381 1 63.28 ? C22 OLC 105 A 1 HETATM 22 O O19 OLC . . . F 3 19.242 15.493 46.982 1 71.08 ? O19 OLC 105 A 1 HETATM 23 O O25 OLC . . . F 3 24.125 11.553 49.547 1 62.16 ? O25 OLC 105 A 1 HETATM 24 O O23 OLC . . . F 3 21.679 11.453 49.43 1 59.9 ? O23 OLC 105 A 1 HETATM 25 O O20 OLC . . . F 3 20.833 13.898 47.311 1 71.14 ? O20 OLC 105 A 1 # _model_server_stats.io_time_ms 24 _model_server_stats.parse_time_ms 6 _model_server_stats.create_model_time_ms 1 _model_server_stats.query_time_ms 277 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 25 #