data_4QO0
#
_model_server_result.job_id            XZpQt2gp7huHflewZOzgyQ 
_model_server_result.datetime_utc      '2024-11-21 14:18:49' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          4qo0 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"D","auth_seq_id":302}' 
#
_entry.id    4QO0 
#
_exptl.entry_id    4QO0 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              306.395 
_entity.id                          4 
_entity.src_method                  man 
_entity.type                        non-polymer 
_entity.pdbx_description            'nonyl beta-D-glucopyranoside' 
_entity.pdbx_number_of_molecules    2 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         120 
_cell.entry_id            4QO0 
_cell.length_a            98.31 
_cell.length_b            98.31 
_cell.length_c            65.25 
_cell.Z_PDB               6 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 4QO0 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        173 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 63' 
#
loop_
_pdbx_struct_assembly.method_details
_pdbx_struct_assembly.oligomeric_details
_pdbx_struct_assembly.oligomeric_count
_pdbx_struct_assembly.details
_pdbx_struct_assembly.id
PISA dimeric 2 author_and_software_defined_assembly 1 
PISA hexameric 6 software_defined_assembly 2 
#
loop_
_pdbx_struct_assembly_gen.asym_id_list
_pdbx_struct_assembly_gen.assembly_id
_pdbx_struct_assembly_gen.oper_expression
A,B,C,D,E,F 1 1 
A,B,C,D,E,F 2 1,2,3 
#
loop_
_pdbx_struct_oper_list.id
_pdbx_struct_oper_list.type
_pdbx_struct_oper_list.name
_pdbx_struct_oper_list.symmetry_operation
_pdbx_struct_oper_list.matrix[1][1]
_pdbx_struct_oper_list.matrix[1][2]
_pdbx_struct_oper_list.matrix[1][3]
_pdbx_struct_oper_list.matrix[2][1]
_pdbx_struct_oper_list.matrix[2][2]
_pdbx_struct_oper_list.matrix[2][3]
_pdbx_struct_oper_list.matrix[3][1]
_pdbx_struct_oper_list.matrix[3][2]
_pdbx_struct_oper_list.matrix[3][3]
_pdbx_struct_oper_list.vector[1]
_pdbx_struct_oper_list.vector[2]
_pdbx_struct_oper_list.vector[3]
1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 
2 'crystal symmetry operation' 2_625 -y+1,x-y-3,z -0.5 -0.866025 0 0.866025 -0.5 0 0 0 1 245.775 -255.416872 0 
3 'crystal symmetry operation' 3_965 -x+y+4,-x+1,z -0.5 0.866025 0 -0.866025 -0.5 0 0 0 1 344.085 85.138957 0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 4 D N N 
? 4 E N N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
covale ? covale1 A OG SER 115 A SER 201 1_555 B C ALA 5 F ALA 5 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.446 ? 
covale ? covale2 A NE2 HIS 168 A HIS 254 1_555 B C1 0QE 6 F 0QE 6 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.432 ? 
covale ? covale3 B C ACE 1 F ACE 1 1_555 B N PHE 2 F PHE 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.308 sing 
covale ? covale4 B C ALA 5 F ALA 5 1_555 B C1 0QE 6 F 0QE 6 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.456 sing 
#
_chem_comp.formula           'C15 H30 O6' 
_chem_comp.formula_weight    306.395 
_chem_comp.id                BNG 
_chem_comp.mon_nstd_flag     n 
_chem_comp.name              'nonyl beta-D-glucopyranoside' 
_chem_comp.type              d-saccharide 
_chem_comp.pdbx_synonyms     'Beta-NONYLGLUCOSIDE;nonyl beta-D-glucoside;nonyl D-glucoside;nonyl glucoside' 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
C1 C2 BNG sing 80 n n 
C1 O1 BNG sing 81 n n 
C1 O5 BNG sing 82 n n 
C1 H1 BNG sing 83 n n 
C2 C3 BNG sing 84 n n 
C2 O2 BNG sing 85 n n 
C2 H2 BNG sing 86 n n 
C3 C4 BNG sing 87 n n 
C3 O3 BNG sing 88 n n 
C3 H3 BNG sing 89 n n 
C4 C5 BNG sing 90 n n 
C4 O4 BNG sing 91 n n 
C4 H4 BNG sing 92 n n 
C5 C6 BNG sing 93 n n 
C5 O5 BNG sing 94 n n 
C5 H5 BNG sing 95 n n 
C6 O6 BNG sing 96 n n 
C6 H61 BNG sing 97 n n 
C6 H62 BNG sing 98 n n 
C1' C2' BNG sing 99 n n 
C1' O1 BNG sing 100 n n 
C1' "H1'1" BNG sing 101 n n 
C1' "H1'2" BNG sing 102 n n 
C2' C3' BNG sing 103 n n 
C2' "H2'1" BNG sing 104 n n 
C2' "H2'2" BNG sing 105 n n 
C3' C4' BNG sing 106 n n 
C3' "H3'1" BNG sing 107 n n 
C3' "H3'2" BNG sing 108 n n 
C4' C5' BNG sing 109 n n 
C4' "H4'1" BNG sing 110 n n 
C4' "H4'2" BNG sing 111 n n 
C5' C6' BNG sing 112 n n 
C5' "H5'1" BNG sing 113 n n 
C5' "H5'2" BNG sing 114 n n 
C6' C7' BNG sing 115 n n 
C6' "H6'1" BNG sing 116 n n 
C6' "H6'2" BNG sing 117 n n 
C7' C8' BNG sing 118 n n 
C7' "H7'1" BNG sing 119 n n 
C7' "H7'2" BNG sing 120 n n 
C8' C9' BNG sing 121 n n 
C8' "H8'1" BNG sing 122 n n 
C8' "H8'2" BNG sing 123 n n 
C9' "H9'1" BNG sing 124 n n 
C9' "H9'2" BNG sing 125 n n 
C9' "H9'3" BNG sing 126 n n 
O2 HO2 BNG sing 127 n n 
O3 HO3 BNG sing 128 n n 
O4 HO4 BNG sing 129 n n 
O6 HO6 BNG sing 130 n n 
#
_pdbx_chem_comp_identifier.comp_id            BNG 
_pdbx_chem_comp_identifier.identifier         b-nonylglucoside 
_pdbx_chem_comp_identifier.type               'IUPAC CARBOHYDRATE SYMBOL' 
_pdbx_chem_comp_identifier.program            PDB-CARE 
_pdbx_chem_comp_identifier.program_version    1 
#
_atom_sites.entry_id                     4QO0 
_atom_sites.fract_transf_matrix[1][1]    0.010172 
_atom_sites.fract_transf_matrix[1][2]    0.005873 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.011746 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.015326 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
C 3 CL A 1 301 1 CL CL . 
D 4 BNG A 1 302 1 BNG BNG . 
E 4 BNG A 1 303 2 BNG BNG . 
F 5 HOH A 1 401 1 HOH HOH . 
F 5 HOH A 2 402 2 HOH HOH . 
F 5 HOH A 3 403 3 HOH HOH . 
F 5 HOH A 4 404 4 HOH HOH . 
F 5 HOH A 5 405 5 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C C1 BNG . . . D 4 192.868 -60.032 -59.138 1 100.1 ? C1 BNG 302 A 1 
HETATM 2 C C2 BNG . . . D 4 192.108 -60.156 -60.44 1 103.96 ? C2 BNG 302 A 1 
HETATM 3 C C3 BNG . . . D 4 192.833 -59.573 -61.652 1 110.26 ? C3 BNG 302 A 1 
HETATM 4 C C4 BNG . . . D 4 193.975 -58.59 -61.326 1 122.11 ? C4 BNG 302 A 1 
HETATM 5 C C5 BNG . . . D 4 194.008 -57.996 -59.897 1 120.82 ? C5 BNG 302 A 1 
HETATM 6 C C6 BNG . . . D 4 193.793 -56.478 -59.974 1 103.44 ? C6 BNG 302 A 1 
HETATM 7 C C1' BNG . . . D 4 192.4 -61.906 -57.626 1 82.03 ? C1' BNG 302 A 1 
HETATM 8 C C2' BNG . . . D 4 192.504 -61.927 -56.09 1 70.24 ? C2' BNG 302 A 1 
HETATM 9 C C3' BNG . . . D 4 193.076 -63.254 -55.566 1 66.37 ? C3' BNG 302 A 1 
HETATM 10 C C4' BNG . . . D 4 192.747 -63.421 -54.076 1 63.89 ? C4' BNG 302 A 1 
HETATM 11 C C5' BNG . . . D 4 193.679 -64.435 -53.389 1 59.24 ? C5' BNG 302 A 1 
HETATM 12 C C6' BNG . . . D 4 193.441 -64.444 -51.87 1 58.75 ? C6' BNG 302 A 1 
HETATM 13 C C7' BNG . . . D 4 193.486 -65.871 -51.323 1 58.33 ? C7' BNG 302 A 1 
HETATM 14 C C8' BNG . . . D 4 192.867 -65.9 -49.924 1 62.74 ? C8' BNG 302 A 1 
HETATM 15 C C9' BNG . . . D 4 193.93 -65.63 -48.874 1 66.15 ? C9' BNG 302 A 1 
HETATM 16 O O1 BNG . . . D 4 192.042 -60.577 -58.089 1 88.89 ? O1 BNG 302 A 1 
HETATM 17 O O2 BNG . . . D 4 191.819 -61.54 -60.66 1 98.6 ? O2 BNG 302 A 1 
HETATM 18 O O3 BNG . . . D 4 191.847 -58.902 -62.492 1 93.74 ? O3 BNG 302 A 1 
HETATM 19 O O4 BNG . . . D 4 195.252 -59.208 -61.597 1 120.37 ? O4 BNG 302 A 1 
HETATM 20 O O5 BNG . . . D 4 193.064 -58.601 -58.963 1 119.44 ? O5 BNG 302 A 1 
HETATM 21 O O6 BNG . . . D 4 193.362 -55.969 -58.724 1 87.85 ? O6 BNG 302 A 1 
#
_model_server_stats.io_time_ms              7 
_model_server_stats.parse_time_ms           8 
_model_server_stats.create_model_time_ms    7 
_model_server_stats.query_time_ms           388 
_model_server_stats.encode_time_ms          2 
_model_server_stats.element_count           21 
#