data_4QO9
#
_model_server_result.job_id            qKc_pANImbfcH-o5hDf2NQ 
_model_server_result.datetime_utc      '2024-11-24 11:15:21' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          4qo9 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"I","auth_seq_id":403}' 
#
_entry.id    4QO9 
#
_exptl.entry_id    4QO9 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              62.068 
_entity.id                          3 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            1,2-ETHANEDIOL 
_entity.pdbx_number_of_molecules    2 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          92.89 
_cell.angle_gamma         90 
_cell.entry_id            4QO9 
_cell.length_a            53.61 
_cell.length_b            90.72 
_cell.length_c            61.88 
_cell.Z_PDB               4 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 4QO9 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        4 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 1 21 1' 
#
loop_
_pdbx_struct_assembly.method_details
_pdbx_struct_assembly.oligomeric_details
_pdbx_struct_assembly.oligomeric_count
_pdbx_struct_assembly.details
_pdbx_struct_assembly.id
? monomeric 1 author_defined_assembly 1 
? monomeric 1 author_defined_assembly 2 
PISA dimeric 2 software_defined_assembly 3 
#
loop_
_pdbx_struct_assembly_gen.asym_id_list
_pdbx_struct_assembly_gen.assembly_id
_pdbx_struct_assembly_gen.oper_expression
A,C,D,E,F,K 1 1 
B,G,H,I,J,L 2 1 
A,C,D,E,F,K 3 1 
B,G,H,I,J,L 3 2 
#
loop_
_pdbx_struct_oper_list.id
_pdbx_struct_oper_list.type
_pdbx_struct_oper_list.name
_pdbx_struct_oper_list.symmetry_operation
_pdbx_struct_oper_list.matrix[1][1]
_pdbx_struct_oper_list.matrix[1][2]
_pdbx_struct_oper_list.matrix[1][3]
_pdbx_struct_oper_list.matrix[2][1]
_pdbx_struct_oper_list.matrix[2][2]
_pdbx_struct_oper_list.matrix[2][3]
_pdbx_struct_oper_list.matrix[3][1]
_pdbx_struct_oper_list.matrix[3][2]
_pdbx_struct_oper_list.matrix[3][3]
_pdbx_struct_oper_list.vector[1]
_pdbx_struct_oper_list.vector[2]
_pdbx_struct_oper_list.vector[3]
1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 
2 'crystal symmetry operation' 1_554 x,y,z-1 1 0 0 0 1 0 0 0 1 3.119905 0 -61.801299 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 3 D N N 
? 3 I N N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
covale ? covale1 A C ASN 184 A ASN 177 1_555 A N TPO 185 A TPO 178 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.329 ? 
covale ? covale2 A C TPO 185 A TPO 178 1_555 A N PHE 186 A PHE 179 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.328 ? 
covale ? covale3 B C ASN 184 B ASN 177 1_555 B N TPO 185 B TPO 178 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.328 ? 
covale ? covale4 B C TPO 185 B TPO 178 1_555 B N PHE 186 B PHE 179 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.331 ? 
#
_chem_comp.formula           'C2 H6 O2' 
_chem_comp.formula_weight    62.068 
_chem_comp.id                EDO 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              1,2-ETHANEDIOL 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     'ETHYLENE GLYCOL' 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
C1 O1 EDO sing 161 n n 
C1 C2 EDO sing 162 n n 
C1 H11 EDO sing 163 n n 
C1 H12 EDO sing 164 n n 
O1 HO1 EDO sing 165 n n 
C2 O2 EDO sing 166 n n 
C2 H21 EDO sing 167 n n 
C2 H22 EDO sing 168 n n 
O2 HO2 EDO sing 169 n n 
#
_atom_sites.entry_id                     4QO9 
_atom_sites.fract_transf_matrix[1][1]    0.018653 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0.000942 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.011023 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.016181 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
C 2 PGE A 1 401 401 PGE PGE . 
D 3 EDO A 1 402 402 EDO EDO . 
E 4 CL A 1 403 403 CL CL . 
F 5 627 A 1 404 404 627 627 . 
G 6 DMS B 1 401 401 DMS DMS . 
H 2 PGE B 1 402 402 PGE PGE . 
I 3 EDO B 1 403 403 EDO EDO . 
J 5 627 B 1 404 404 627 627 . 
K 7 HOH A 1 501 501 HOH HOH . 
K 7 HOH A 2 502 502 HOH HOH . 
K 7 HOH A 3 503 503 HOH HOH . 
K 7 HOH A 4 504 504 HOH HOH . 
K 7 HOH A 5 505 505 HOH HOH . 
K 7 HOH A 6 506 506 HOH HOH . 
K 7 HOH A 7 507 507 HOH HOH . 
K 7 HOH A 8 508 508 HOH HOH . 
K 7 HOH A 9 509 509 HOH HOH . 
K 7 HOH A 10 510 510 HOH HOH . 
K 7 HOH A 11 511 511 HOH HOH . 
K 7 HOH A 12 512 512 HOH HOH . 
K 7 HOH A 13 513 513 HOH HOH . 
K 7 HOH A 14 514 514 HOH HOH . 
K 7 HOH A 15 515 515 HOH HOH . 
K 7 HOH A 16 516 516 HOH HOH . 
K 7 HOH A 17 517 517 HOH HOH . 
K 7 HOH A 18 518 518 HOH HOH . 
K 7 HOH A 19 519 519 HOH HOH . 
K 7 HOH A 20 520 520 HOH HOH . 
K 7 HOH A 21 521 521 HOH HOH . 
K 7 HOH A 22 522 522 HOH HOH . 
K 7 HOH A 23 523 523 HOH HOH . 
K 7 HOH A 24 524 524 HOH HOH . 
K 7 HOH A 25 525 525 HOH HOH . 
K 7 HOH A 26 526 526 HOH HOH . 
K 7 HOH A 27 527 527 HOH HOH . 
K 7 HOH A 28 528 528 HOH HOH . 
K 7 HOH A 29 529 529 HOH HOH . 
K 7 HOH A 30 530 530 HOH HOH . 
K 7 HOH A 31 531 531 HOH HOH . 
K 7 HOH A 32 532 532 HOH HOH . 
K 7 HOH A 33 533 533 HOH HOH . 
K 7 HOH A 34 534 534 HOH HOH . 
K 7 HOH A 35 535 535 HOH HOH . 
K 7 HOH A 36 536 536 HOH HOH . 
K 7 HOH A 37 537 537 HOH HOH . 
K 7 HOH A 38 538 538 HOH HOH . 
K 7 HOH A 39 539 539 HOH HOH . 
K 7 HOH A 40 540 540 HOH HOH . 
K 7 HOH A 41 541 541 HOH HOH . 
K 7 HOH A 42 542 542 HOH HOH . 
K 7 HOH A 43 543 543 HOH HOH . 
K 7 HOH A 44 544 544 HOH HOH . 
K 7 HOH A 45 545 545 HOH HOH . 
K 7 HOH A 46 546 546 HOH HOH . 
K 7 HOH A 47 547 547 HOH HOH . 
K 7 HOH A 48 548 548 HOH HOH . 
K 7 HOH A 49 549 549 HOH HOH . 
K 7 HOH A 50 550 550 HOH HOH . 
K 7 HOH A 51 551 551 HOH HOH . 
K 7 HOH A 52 552 552 HOH HOH . 
K 7 HOH A 53 553 553 HOH HOH . 
K 7 HOH A 54 554 554 HOH HOH . 
K 7 HOH A 55 555 555 HOH HOH . 
K 7 HOH A 56 556 556 HOH HOH . 
K 7 HOH A 57 557 557 HOH HOH . 
K 7 HOH A 58 558 558 HOH HOH . 
K 7 HOH A 59 559 559 HOH HOH . 
K 7 HOH A 60 560 560 HOH HOH . 
K 7 HOH A 61 561 561 HOH HOH . 
K 7 HOH A 62 562 562 HOH HOH . 
K 7 HOH A 63 563 563 HOH HOH . 
K 7 HOH A 64 564 564 HOH HOH . 
K 7 HOH A 65 565 565 HOH HOH . 
K 7 HOH A 66 566 566 HOH HOH . 
K 7 HOH A 67 567 567 HOH HOH . 
K 7 HOH A 68 568 568 HOH HOH . 
K 7 HOH A 69 569 569 HOH HOH . 
K 7 HOH A 70 570 570 HOH HOH . 
K 7 HOH A 71 571 571 HOH HOH . 
K 7 HOH A 72 572 572 HOH HOH . 
K 7 HOH A 73 573 573 HOH HOH . 
K 7 HOH A 74 574 574 HOH HOH . 
K 7 HOH A 75 575 575 HOH HOH . 
K 7 HOH A 76 576 576 HOH HOH . 
K 7 HOH A 77 577 577 HOH HOH . 
K 7 HOH A 78 578 578 HOH HOH . 
K 7 HOH A 79 579 579 HOH HOH . 
K 7 HOH A 80 580 580 HOH HOH . 
K 7 HOH A 81 581 581 HOH HOH . 
K 7 HOH A 82 582 582 HOH HOH . 
K 7 HOH A 83 583 583 HOH HOH . 
K 7 HOH A 84 584 584 HOH HOH . 
K 7 HOH A 85 585 585 HOH HOH . 
K 7 HOH A 86 586 586 HOH HOH . 
L 7 HOH B 1 501 501 HOH HOH . 
L 7 HOH B 2 502 502 HOH HOH . 
L 7 HOH B 3 503 503 HOH HOH . 
L 7 HOH B 4 504 504 HOH HOH . 
L 7 HOH B 5 505 505 HOH HOH . 
L 7 HOH B 6 506 506 HOH HOH . 
L 7 HOH B 7 507 507 HOH HOH . 
L 7 HOH B 8 508 508 HOH HOH . 
L 7 HOH B 9 509 509 HOH HOH . 
L 7 HOH B 10 510 510 HOH HOH . 
L 7 HOH B 11 511 511 HOH HOH . 
L 7 HOH B 12 512 512 HOH HOH . 
L 7 HOH B 13 513 513 HOH HOH . 
L 7 HOH B 14 514 514 HOH HOH . 
L 7 HOH B 15 515 515 HOH HOH . 
L 7 HOH B 16 516 516 HOH HOH . 
L 7 HOH B 17 517 517 HOH HOH . 
L 7 HOH B 18 518 518 HOH HOH . 
L 7 HOH B 19 519 519 HOH HOH . 
L 7 HOH B 20 520 520 HOH HOH . 
L 7 HOH B 21 521 521 HOH HOH . 
L 7 HOH B 22 522 522 HOH HOH . 
L 7 HOH B 23 523 523 HOH HOH . 
L 7 HOH B 24 524 524 HOH HOH . 
L 7 HOH B 25 525 525 HOH HOH . 
L 7 HOH B 26 526 526 HOH HOH . 
L 7 HOH B 27 527 527 HOH HOH . 
L 7 HOH B 28 528 528 HOH HOH . 
L 7 HOH B 29 529 529 HOH HOH . 
L 7 HOH B 30 530 530 HOH HOH . 
L 7 HOH B 31 531 531 HOH HOH . 
L 7 HOH B 32 532 532 HOH HOH . 
L 7 HOH B 33 533 533 HOH HOH . 
L 7 HOH B 34 534 534 HOH HOH . 
L 7 HOH B 35 535 535 HOH HOH . 
L 7 HOH B 36 536 536 HOH HOH . 
L 7 HOH B 37 537 537 HOH HOH . 
L 7 HOH B 38 538 538 HOH HOH . 
L 7 HOH B 39 539 539 HOH HOH . 
L 7 HOH B 40 540 540 HOH HOH . 
L 7 HOH B 41 541 541 HOH HOH . 
L 7 HOH B 42 542 542 HOH HOH . 
L 7 HOH B 43 543 543 HOH HOH . 
L 7 HOH B 44 544 544 HOH HOH . 
L 7 HOH B 45 545 545 HOH HOH . 
L 7 HOH B 46 546 546 HOH HOH . 
L 7 HOH B 47 547 547 HOH HOH . 
L 7 HOH B 48 548 548 HOH HOH . 
L 7 HOH B 49 549 549 HOH HOH . 
L 7 HOH B 50 550 550 HOH HOH . 
L 7 HOH B 51 551 551 HOH HOH . 
L 7 HOH B 52 552 552 HOH HOH . 
L 7 HOH B 53 553 553 HOH HOH . 
L 7 HOH B 54 554 554 HOH HOH . 
L 7 HOH B 55 555 555 HOH HOH . 
L 7 HOH B 56 556 556 HOH HOH . 
L 7 HOH B 57 557 557 HOH HOH . 
L 7 HOH B 58 558 558 HOH HOH . 
L 7 HOH B 59 559 559 HOH HOH . 
L 7 HOH B 60 560 560 HOH HOH . 
L 7 HOH B 61 561 561 HOH HOH . 
L 7 HOH B 62 562 562 HOH HOH . 
L 7 HOH B 63 563 563 HOH HOH . 
L 7 HOH B 64 564 564 HOH HOH . 
L 7 HOH B 65 565 565 HOH HOH . 
L 7 HOH B 66 566 566 HOH HOH . 
L 7 HOH B 67 567 567 HOH HOH . 
L 7 HOH B 68 568 568 HOH HOH . 
L 7 HOH B 69 569 569 HOH HOH . 
L 7 HOH B 70 570 570 HOH HOH . 
L 7 HOH B 71 571 571 HOH HOH . 
L 7 HOH B 72 572 572 HOH HOH . 
L 7 HOH B 73 573 573 HOH HOH . 
L 7 HOH B 74 574 574 HOH HOH . 
L 7 HOH B 75 575 575 HOH HOH . 
L 7 HOH B 76 576 576 HOH HOH . 
L 7 HOH B 77 577 577 HOH HOH . 
L 7 HOH B 78 578 578 HOH HOH . 
L 7 HOH B 79 579 579 HOH HOH . 
L 7 HOH B 80 580 580 HOH HOH . 
L 7 HOH B 81 581 581 HOH HOH . 
L 7 HOH B 82 582 582 HOH HOH . 
L 7 HOH B 83 583 583 HOH HOH . 
L 7 HOH B 84 584 584 HOH HOH . 
L 7 HOH B 85 585 585 HOH HOH . 
L 7 HOH B 86 586 586 HOH HOH . 
L 7 HOH B 87 587 587 HOH HOH . 
L 7 HOH B 88 588 588 HOH HOH . 
L 7 HOH B 89 589 589 HOH HOH . 
L 7 HOH B 90 590 590 HOH HOH . 
L 7 HOH B 91 591 591 HOH HOH . 
L 7 HOH B 92 592 592 HOH HOH . 
L 7 HOH B 93 593 593 HOH HOH . 
L 7 HOH B 94 594 594 HOH HOH . 
L 7 HOH B 95 595 595 HOH HOH . 
L 7 HOH B 96 596 596 HOH HOH . 
L 7 HOH B 97 597 597 HOH HOH . 
L 7 HOH B 98 598 598 HOH HOH . 
L 7 HOH B 99 599 599 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C C1 EDO . . . I 3 19.178 26.708 11.001 1 37.01 ? C1 EDO 403 B 1 
HETATM 2 O O1 EDO . . . I 3 18.944 26.874 9.586 1 39.44 ? O1 EDO 403 B 1 
HETATM 3 C C2 EDO . . . I 3 18.349 25.53 11.527 1 32.04 ? C2 EDO 403 B 1 
HETATM 4 O O2 EDO . . . I 3 17.794 24.811 10.409 1 31.06 ? O2 EDO 403 B 1 
#
_model_server_stats.io_time_ms              20 
_model_server_stats.parse_time_ms           17 
_model_server_stats.create_model_time_ms    13 
_model_server_stats.query_time_ms           873 
_model_server_stats.encode_time_ms          7 
_model_server_stats.element_count           4 
#