data_4QP1 # _model_server_result.job_id Y3-0ArVsh5FomWOkXm_EqA _model_server_result.datetime_utc '2024-11-29 06:56:57' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 4qp1 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"D","auth_seq_id":402}' # _entry.id 4QP1 # _exptl.entry_id 4QP1 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 69.085 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description IMIDAZOLE _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 4QP1 _cell.length_a 82.808 _cell.length_b 82.808 _cell.length_c 274.595 _cell.Z_PDB 16 _cell.pdbx_unique_axis ? # _symmetry.entry_id 4QP1 _symmetry.cell_setting ? _symmetry.Int_Tables_number 92 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 41 21 2' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id PISA monomeric 1 author_and_software_defined_assembly 1 PISA monomeric 1 author_and_software_defined_assembly 2 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,C,D,G 1 1 B,E,F,H 2 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 3 D N N ? 3 F N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order covale ? covale1 A C NEP 134 A NEP 125 1_555 A N ILE 135 A ILE 126 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.329 ? covale ? covale2 B C NEP 134 B NEP 125 1_555 B N ILE 135 B ILE 126 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.331 ? # _chem_comp.formula 'C3 H5 N2 1' _chem_comp.formula_weight 69.085 _chem_comp.id IMD _chem_comp.mon_nstd_flag . _chem_comp.name IMIDAZOLE _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # _atom_sites.entry_id 4QP1 _atom_sites.fract_transf_matrix[1][1] 0.012076 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.012076 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.003642 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 EMU A 1 401 1 EMU LIG . D 3 IMD A 1 402 1 IMD IMD . E 2 EMU B 1 401 1 EMU LIG . F 3 IMD B 1 402 1 IMD IMD . G 4 HOH A 1 501 1 HOH HOH . G 4 HOH A 2 502 2 HOH HOH . G 4 HOH A 3 503 3 HOH HOH . G 4 HOH A 4 504 4 HOH HOH . G 4 HOH A 5 505 6 HOH HOH . G 4 HOH A 6 506 7 HOH HOH . G 4 HOH A 7 507 9 HOH HOH . G 4 HOH A 8 508 10 HOH HOH . G 4 HOH A 9 509 11 HOH HOH . G 4 HOH A 10 510 12 HOH HOH . G 4 HOH A 11 511 13 HOH HOH . G 4 HOH A 12 512 14 HOH HOH . G 4 HOH A 13 513 15 HOH HOH . G 4 HOH A 14 514 16 HOH HOH . G 4 HOH A 15 515 17 HOH HOH . G 4 HOH A 16 516 18 HOH HOH . G 4 HOH A 17 517 19 HOH HOH . G 4 HOH A 18 518 20 HOH HOH . G 4 HOH A 19 519 21 HOH HOH . G 4 HOH A 20 520 22 HOH HOH . G 4 HOH A 21 521 24 HOH HOH . G 4 HOH A 22 522 25 HOH HOH . G 4 HOH A 23 523 41 HOH HOH . G 4 HOH A 24 524 42 HOH HOH . G 4 HOH A 25 525 44 HOH HOH . G 4 HOH A 26 526 45 HOH HOH . G 4 HOH A 27 527 48 HOH HOH . G 4 HOH A 28 528 49 HOH HOH . G 4 HOH A 29 529 51 HOH HOH . G 4 HOH A 30 530 59 HOH HOH . G 4 HOH A 31 531 73 HOH HOH . G 4 HOH A 32 532 88 HOH HOH . G 4 HOH A 33 533 93 HOH HOH . G 4 HOH A 34 534 95 HOH HOH . G 4 HOH A 35 535 96 HOH HOH . G 4 HOH A 36 536 97 HOH HOH . G 4 HOH A 37 537 98 HOH HOH . G 4 HOH A 38 538 102 HOH HOH . G 4 HOH A 39 539 103 HOH HOH . G 4 HOH A 40 540 109 HOH HOH . G 4 HOH A 41 541 110 HOH HOH . G 4 HOH A 42 542 112 HOH HOH . G 4 HOH A 43 543 114 HOH HOH . G 4 HOH A 44 544 118 HOH HOH . G 4 HOH A 45 545 120 HOH HOH . G 4 HOH A 46 546 121 HOH HOH . G 4 HOH A 47 547 122 HOH HOH . G 4 HOH A 48 548 123 HOH HOH . G 4 HOH A 49 549 124 HOH HOH . G 4 HOH A 50 550 125 HOH HOH . G 4 HOH A 51 551 126 HOH HOH . G 4 HOH A 52 552 131 HOH HOH . G 4 HOH A 53 553 134 HOH HOH . G 4 HOH A 54 554 136 HOH HOH . G 4 HOH A 55 555 137 HOH HOH . G 4 HOH A 56 556 138 HOH HOH . G 4 HOH A 57 557 141 HOH HOH . G 4 HOH A 58 558 147 HOH HOH . G 4 HOH A 59 559 148 HOH HOH . G 4 HOH A 60 560 151 HOH HOH . G 4 HOH A 61 561 158 HOH HOH . G 4 HOH A 62 562 165 HOH HOH . G 4 HOH A 63 563 166 HOH HOH . G 4 HOH A 64 564 167 HOH HOH . G 4 HOH A 65 565 172 HOH HOH . G 4 HOH A 66 566 176 HOH HOH . G 4 HOH A 67 567 177 HOH HOH . G 4 HOH A 68 568 197 HOH HOH . G 4 HOH A 69 569 198 HOH HOH . G 4 HOH A 70 570 202 HOH HOH . G 4 HOH A 71 571 203 HOH HOH . G 4 HOH A 72 572 205 HOH HOH . G 4 HOH A 73 573 206 HOH HOH . G 4 HOH A 74 574 207 HOH HOH . G 4 HOH A 75 575 208 HOH HOH . G 4 HOH A 76 576 209 HOH HOH . G 4 HOH A 77 577 211 HOH HOH . G 4 HOH A 78 578 217 HOH HOH . G 4 HOH A 79 579 221 HOH HOH . G 4 HOH A 80 580 224 HOH HOH . G 4 HOH A 81 581 249 HOH HOH . G 4 HOH A 82 582 256 HOH HOH . G 4 HOH A 83 583 259 HOH HOH . G 4 HOH A 84 584 262 HOH HOH . G 4 HOH A 85 585 270 HOH HOH . G 4 HOH A 86 586 282 HOH HOH . G 4 HOH A 87 587 303 HOH HOH . G 4 HOH A 88 588 304 HOH HOH . G 4 HOH A 89 589 312 HOH HOH . G 4 HOH A 90 590 318 HOH HOH . G 4 HOH A 91 591 320 HOH HOH . G 4 HOH A 92 592 321 HOH HOH . G 4 HOH A 93 593 322 HOH HOH . G 4 HOH A 94 594 325 HOH HOH . G 4 HOH A 95 595 331 HOH HOH . G 4 HOH A 96 596 340 HOH HOH . G 4 HOH A 97 597 345 HOH HOH . G 4 HOH A 98 598 350 HOH HOH . H 4 HOH B 1 501 27 HOH HOH . H 4 HOH B 2 502 28 HOH HOH . H 4 HOH B 3 503 29 HOH HOH . H 4 HOH B 4 504 30 HOH HOH . H 4 HOH B 5 505 32 HOH HOH . H 4 HOH B 6 506 33 HOH HOH . H 4 HOH B 7 507 34 HOH HOH . H 4 HOH B 8 508 35 HOH HOH . H 4 HOH B 9 509 36 HOH HOH . H 4 HOH B 10 510 37 HOH HOH . H 4 HOH B 11 511 38 HOH HOH . H 4 HOH B 12 512 39 HOH HOH . H 4 HOH B 13 513 40 HOH HOH . H 4 HOH B 14 514 43 HOH HOH . H 4 HOH B 15 515 46 HOH HOH . H 4 HOH B 16 516 50 HOH HOH . H 4 HOH B 17 517 53 HOH HOH . H 4 HOH B 18 518 54 HOH HOH . H 4 HOH B 19 519 55 HOH HOH . H 4 HOH B 20 520 58 HOH HOH . H 4 HOH B 21 521 62 HOH HOH . H 4 HOH B 22 522 63 HOH HOH . H 4 HOH B 23 523 67 HOH HOH . H 4 HOH B 24 524 69 HOH HOH . H 4 HOH B 25 525 71 HOH HOH . H 4 HOH B 26 526 74 HOH HOH . H 4 HOH B 27 527 83 HOH HOH . H 4 HOH B 28 528 85 HOH HOH . H 4 HOH B 29 529 101 HOH HOH . H 4 HOH B 30 530 104 HOH HOH . H 4 HOH B 31 531 105 HOH HOH . H 4 HOH B 32 532 106 HOH HOH . H 4 HOH B 33 533 107 HOH HOH . H 4 HOH B 34 534 108 HOH HOH . H 4 HOH B 35 535 115 HOH HOH . H 4 HOH B 36 536 116 HOH HOH . H 4 HOH B 37 537 119 HOH HOH . H 4 HOH B 38 538 128 HOH HOH . H 4 HOH B 39 539 132 HOH HOH . H 4 HOH B 40 540 135 HOH HOH . H 4 HOH B 41 541 139 HOH HOH . H 4 HOH B 42 542 140 HOH HOH . H 4 HOH B 43 543 142 HOH HOH . H 4 HOH B 44 544 144 HOH HOH . H 4 HOH B 45 545 146 HOH HOH . H 4 HOH B 46 546 149 HOH HOH . H 4 HOH B 47 547 150 HOH HOH . H 4 HOH B 48 548 153 HOH HOH . H 4 HOH B 49 549 154 HOH HOH . H 4 HOH B 50 550 157 HOH HOH . H 4 HOH B 51 551 161 HOH HOH . H 4 HOH B 52 552 168 HOH HOH . H 4 HOH B 53 553 173 HOH HOH . H 4 HOH B 54 554 174 HOH HOH . H 4 HOH B 55 555 180 HOH HOH . H 4 HOH B 56 556 191 HOH HOH . H 4 HOH B 57 557 196 HOH HOH . H 4 HOH B 58 558 199 HOH HOH . H 4 HOH B 59 559 201 HOH HOH . H 4 HOH B 60 560 210 HOH HOH . H 4 HOH B 61 561 214 HOH HOH . H 4 HOH B 62 562 215 HOH HOH . H 4 HOH B 63 563 225 HOH HOH . H 4 HOH B 64 564 233 HOH HOH . H 4 HOH B 65 565 234 HOH HOH . H 4 HOH B 66 566 236 HOH HOH . H 4 HOH B 67 567 246 HOH HOH . H 4 HOH B 68 568 248 HOH HOH . H 4 HOH B 69 569 250 HOH HOH . H 4 HOH B 70 570 251 HOH HOH . H 4 HOH B 71 571 252 HOH HOH . H 4 HOH B 72 572 255 HOH HOH . H 4 HOH B 73 573 266 HOH HOH . H 4 HOH B 74 574 272 HOH HOH . H 4 HOH B 75 575 277 HOH HOH . H 4 HOH B 76 576 280 HOH HOH . H 4 HOH B 77 577 286 HOH HOH . H 4 HOH B 78 578 288 HOH HOH . H 4 HOH B 79 579 296 HOH HOH . H 4 HOH B 80 580 297 HOH HOH . H 4 HOH B 81 581 299 HOH HOH . H 4 HOH B 82 582 319 HOH HOH . H 4 HOH B 83 583 324 HOH HOH . H 4 HOH B 84 584 330 HOH HOH . H 4 HOH B 85 585 336 HOH HOH . H 4 HOH B 86 586 337 HOH HOH . H 4 HOH B 87 587 343 HOH HOH . H 4 HOH B 88 588 349 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 N N1 IMD . . . D 3 -14.466 -40.041 -28.415 1 96.34 ? N1 IMD 402 A 1 HETATM 2 C C2 IMD . . . D 3 -14.364 -39.082 -29.36 1 95.91 ? C2 IMD 402 A 1 HETATM 3 N N3 IMD . . . D 3 -15.506 -39.064 -30.083 1 98.76 ? N3 IMD 402 A 1 HETATM 4 C C4 IMD . . . D 3 -16.333 -40.014 -29.597 1 99.82 ? C4 IMD 402 A 1 HETATM 5 C C5 IMD . . . D 3 -15.675 -40.631 -28.541 1 99.07 ? C5 IMD 402 A 1 # _model_server_stats.io_time_ms 17 _model_server_stats.parse_time_ms 8 _model_server_stats.create_model_time_ms 17 _model_server_stats.query_time_ms 322 _model_server_stats.encode_time_ms 6 _model_server_stats.element_count 5 #