data_4QP5 # _model_server_result.job_id P3ClrN8C-KdJY2sxwKgrrA _model_server_result.datetime_utc '2024-11-15 03:45:57' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 4qp5 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"E","auth_seq_id":403}' # _entry.id 4QP5 # _exptl.entry_id 4QP5 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 92.094 _entity.id 4 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description GLYCEROL _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 97.42 _cell.angle_gamma 90 _cell.entry_id 4QP5 _cell.length_a 34.279 _cell.length_b 106.78 _cell.length_c 34.331 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 4QP5 _symmetry.cell_setting ? _symmetry.Int_Tables_number 4 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1 21 1' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id PISA monomeric 1 author_and_software_defined_assembly 1 PISA monomeric 1 author_and_software_defined_assembly 2 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,C,D,E,I 1 1 B,F,G,H,J 2 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 4 E N N ? 4 H N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A NE2 HIS 33 A HIS 279 1_555 C ZN ZN . A ZN 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.052 ? metalc ? metalc2 A OD1 ASP 37 A ASP 283 1_555 C ZN ZN . A ZN 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.969 ? metalc ? metalc3 A ND1 HIS 116 A HIS 362 1_555 C ZN ZN . A ZN 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.103 ? metalc ? metalc4 C ZN ZN . A ZN 401 1_555 D O3 PO4 . A PO4 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.889 ? metalc ? metalc5 B NE2 HIS 33 B HIS 279 1_555 F ZN ZN . B ZN 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.05 ? metalc ? metalc6 B OD1 ASP 37 B ASP 283 1_555 F ZN ZN . B ZN 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.023 ? metalc ? metalc7 B ND1 HIS 116 B HIS 362 1_555 F ZN ZN . B ZN 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.914 ? metalc ? metalc8 F ZN ZN . B ZN 401 1_555 G O4 PO4 . B PO4 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.029 ? metalc ? metalc9 F ZN ZN . B ZN 401 1_555 G O2 PO4 . B PO4 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.693 ? # _chem_comp.formula 'C3 H8 O3' _chem_comp.formula_weight 92.094 _chem_comp.id GOL _chem_comp.mon_nstd_flag . _chem_comp.name GLYCEROL _chem_comp.type non-polymer _chem_comp.pdbx_synonyms GLYCERIN;PROPANE-1,2,3-TRIOL # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 O1 GOL sing 116 n n C1 C2 GOL sing 117 n n C1 H11 GOL sing 118 n n C1 H12 GOL sing 119 n n O1 HO1 GOL sing 120 n n C2 O2 GOL sing 121 n n C2 C3 GOL sing 122 n n C2 H2 GOL sing 123 n n O2 HO2 GOL sing 124 n n C3 O3 GOL sing 125 n n C3 H31 GOL sing 126 n n C3 H32 GOL sing 127 n n O3 HO3 GOL sing 128 n n # _atom_sites.entry_id 4QP5 _atom_sites.fract_transf_matrix[1][1] 0.029172 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.003799 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.009365 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.029374 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 ZN A 1 401 1 ZN ZN . D 3 PO4 A 1 402 3 PO4 PO4 . E 4 GOL A 1 403 6 GOL GOL . F 2 ZN B 1 401 2 ZN ZN . G 3 PO4 B 1 402 4 PO4 PO4 . H 4 GOL B 1 403 5 GOL GOL . I 5 HOH A 1 501 1 HOH HOH . I 5 HOH A 2 502 5 HOH HOH . I 5 HOH A 3 503 6 HOH HOH . I 5 HOH A 4 504 9 HOH HOH . I 5 HOH A 5 505 10 HOH HOH . I 5 HOH A 6 506 12 HOH HOH . I 5 HOH A 7 507 13 HOH HOH . I 5 HOH A 8 508 14 HOH HOH . I 5 HOH A 9 509 19 HOH HOH . I 5 HOH A 10 510 21 HOH HOH . I 5 HOH A 11 511 22 HOH HOH . I 5 HOH A 12 512 24 HOH HOH . I 5 HOH A 13 513 26 HOH HOH . I 5 HOH A 14 514 29 HOH HOH . I 5 HOH A 15 515 32 HOH HOH . I 5 HOH A 16 516 34 HOH HOH . I 5 HOH A 17 517 35 HOH HOH . I 5 HOH A 18 518 38 HOH HOH . I 5 HOH A 19 519 39 HOH HOH . I 5 HOH A 20 520 43 HOH HOH . I 5 HOH A 21 521 44 HOH HOH . I 5 HOH A 22 522 56 HOH HOH . I 5 HOH A 23 523 57 HOH HOH . I 5 HOH A 24 524 60 HOH HOH . I 5 HOH A 25 525 61 HOH HOH . I 5 HOH A 26 526 62 HOH HOH . I 5 HOH A 27 527 63 HOH HOH . I 5 HOH A 28 528 64 HOH HOH . I 5 HOH A 29 529 65 HOH HOH . I 5 HOH A 30 530 67 HOH HOH . I 5 HOH A 31 531 69 HOH HOH . I 5 HOH A 32 532 70 HOH HOH . I 5 HOH A 33 533 72 HOH HOH . I 5 HOH A 34 534 74 HOH HOH . I 5 HOH A 35 535 75 HOH HOH . I 5 HOH A 36 536 78 HOH HOH . I 5 HOH A 37 537 80 HOH HOH . I 5 HOH A 38 538 84 HOH HOH . I 5 HOH A 39 539 85 HOH HOH . I 5 HOH A 40 540 87 HOH HOH . I 5 HOH A 41 541 91 HOH HOH . I 5 HOH A 42 542 95 HOH HOH . I 5 HOH A 43 543 99 HOH HOH . I 5 HOH A 44 544 100 HOH HOH . I 5 HOH A 45 545 102 HOH HOH . I 5 HOH A 46 546 105 HOH HOH . I 5 HOH A 47 547 106 HOH HOH . I 5 HOH A 48 548 108 HOH HOH . I 5 HOH A 49 549 109 HOH HOH . I 5 HOH A 50 550 111 HOH HOH . I 5 HOH A 51 551 112 HOH HOH . I 5 HOH A 52 552 114 HOH HOH . I 5 HOH A 53 553 115 HOH HOH . I 5 HOH A 54 554 117 HOH HOH . I 5 HOH A 55 555 118 HOH HOH . I 5 HOH A 56 556 120 HOH HOH . I 5 HOH A 57 557 121 HOH HOH . I 5 HOH A 58 558 122 HOH HOH . I 5 HOH A 59 559 123 HOH HOH . I 5 HOH A 60 560 124 HOH HOH . I 5 HOH A 61 561 126 HOH HOH . I 5 HOH A 62 562 128 HOH HOH . I 5 HOH A 63 563 129 HOH HOH . I 5 HOH A 64 564 131 HOH HOH . I 5 HOH A 65 565 134 HOH HOH . I 5 HOH A 66 566 141 HOH HOH . I 5 HOH A 67 567 144 HOH HOH . I 5 HOH A 68 568 151 HOH HOH . I 5 HOH A 69 569 152 HOH HOH . I 5 HOH A 70 570 153 HOH HOH . I 5 HOH A 71 571 154 HOH HOH . I 5 HOH A 72 572 155 HOH HOH . I 5 HOH A 73 573 159 HOH HOH . I 5 HOH A 74 574 161 HOH HOH . I 5 HOH A 75 575 162 HOH HOH . I 5 HOH A 76 576 167 HOH HOH . I 5 HOH A 77 577 171 HOH HOH . I 5 HOH A 78 578 174 HOH HOH . I 5 HOH A 79 579 175 HOH HOH . I 5 HOH A 80 580 181 HOH HOH . I 5 HOH A 81 581 182 HOH HOH . I 5 HOH A 82 582 184 HOH HOH . I 5 HOH A 83 583 188 HOH HOH . I 5 HOH A 84 584 191 HOH HOH . I 5 HOH A 85 585 194 HOH HOH . I 5 HOH A 86 586 196 HOH HOH . I 5 HOH A 87 587 202 HOH HOH . I 5 HOH A 88 588 205 HOH HOH . I 5 HOH A 89 589 207 HOH HOH . I 5 HOH A 90 590 216 HOH HOH . I 5 HOH A 91 591 218 HOH HOH . I 5 HOH A 92 592 219 HOH HOH . I 5 HOH A 93 593 220 HOH HOH . I 5 HOH A 94 594 222 HOH HOH . I 5 HOH A 95 595 231 HOH HOH . I 5 HOH A 96 596 232 HOH HOH . I 5 HOH A 97 597 234 HOH HOH . I 5 HOH A 98 598 236 HOH HOH . I 5 HOH A 99 599 237 HOH HOH . I 5 HOH A 100 600 238 HOH HOH . I 5 HOH A 101 601 241 HOH HOH . I 5 HOH A 102 602 243 HOH HOH . I 5 HOH A 103 603 244 HOH HOH . I 5 HOH A 104 604 245 HOH HOH . I 5 HOH A 105 605 246 HOH HOH . I 5 HOH A 106 606 247 HOH HOH . I 5 HOH A 107 607 248 HOH HOH . I 5 HOH A 108 608 252 HOH HOH . I 5 HOH A 109 609 254 HOH HOH . I 5 HOH A 110 610 257 HOH HOH . I 5 HOH A 111 611 258 HOH HOH . I 5 HOH A 112 612 259 HOH HOH . J 5 HOH B 1 501 2 HOH HOH . J 5 HOH B 2 502 3 HOH HOH . J 5 HOH B 3 503 4 HOH HOH . J 5 HOH B 4 504 7 HOH HOH . J 5 HOH B 5 505 8 HOH HOH . J 5 HOH B 6 506 11 HOH HOH . J 5 HOH B 7 507 15 HOH HOH . J 5 HOH B 8 508 16 HOH HOH . J 5 HOH B 9 509 17 HOH HOH . J 5 HOH B 10 510 18 HOH HOH . J 5 HOH B 11 511 20 HOH HOH . J 5 HOH B 12 512 23 HOH HOH . J 5 HOH B 13 513 25 HOH HOH . J 5 HOH B 14 514 27 HOH HOH . J 5 HOH B 15 515 28 HOH HOH . J 5 HOH B 16 516 30 HOH HOH . J 5 HOH B 17 517 31 HOH HOH . J 5 HOH B 18 518 33 HOH HOH . J 5 HOH B 19 519 36 HOH HOH . J 5 HOH B 20 520 37 HOH HOH . J 5 HOH B 21 521 40 HOH HOH . J 5 HOH B 22 522 41 HOH HOH . J 5 HOH B 23 523 42 HOH HOH . J 5 HOH B 24 524 45 HOH HOH . J 5 HOH B 25 525 46 HOH HOH . J 5 HOH B 26 526 47 HOH HOH . J 5 HOH B 27 527 48 HOH HOH . J 5 HOH B 28 528 49 HOH HOH . J 5 HOH B 29 529 50 HOH HOH . J 5 HOH B 30 530 51 HOH HOH . J 5 HOH B 31 531 52 HOH HOH . J 5 HOH B 32 532 53 HOH HOH . J 5 HOH B 33 533 54 HOH HOH . J 5 HOH B 34 534 55 HOH HOH . J 5 HOH B 35 535 58 HOH HOH . J 5 HOH B 36 536 59 HOH HOH . J 5 HOH B 37 537 66 HOH HOH . J 5 HOH B 38 538 68 HOH HOH . J 5 HOH B 39 539 71 HOH HOH . J 5 HOH B 40 540 73 HOH HOH . J 5 HOH B 41 541 76 HOH HOH . J 5 HOH B 42 542 79 HOH HOH . J 5 HOH B 43 543 81 HOH HOH . J 5 HOH B 44 544 83 HOH HOH . J 5 HOH B 45 545 86 HOH HOH . J 5 HOH B 46 546 88 HOH HOH . J 5 HOH B 47 547 89 HOH HOH . J 5 HOH B 48 548 90 HOH HOH . J 5 HOH B 49 549 92 HOH HOH . J 5 HOH B 50 550 93 HOH HOH . J 5 HOH B 51 551 94 HOH HOH . J 5 HOH B 52 552 96 HOH HOH . J 5 HOH B 53 553 98 HOH HOH . J 5 HOH B 54 554 101 HOH HOH . J 5 HOH B 55 555 103 HOH HOH . J 5 HOH B 56 556 104 HOH HOH . J 5 HOH B 57 557 107 HOH HOH . J 5 HOH B 58 558 110 HOH HOH . J 5 HOH B 59 559 113 HOH HOH . J 5 HOH B 60 560 119 HOH HOH . J 5 HOH B 61 561 125 HOH HOH . J 5 HOH B 62 562 130 HOH HOH . J 5 HOH B 63 563 132 HOH HOH . J 5 HOH B 64 564 133 HOH HOH . J 5 HOH B 65 565 135 HOH HOH . J 5 HOH B 66 566 136 HOH HOH . J 5 HOH B 67 567 138 HOH HOH . J 5 HOH B 68 568 139 HOH HOH . J 5 HOH B 69 569 143 HOH HOH . J 5 HOH B 70 570 145 HOH HOH . J 5 HOH B 71 571 147 HOH HOH . J 5 HOH B 72 572 149 HOH HOH . J 5 HOH B 73 573 150 HOH HOH . J 5 HOH B 74 574 156 HOH HOH . J 5 HOH B 75 575 157 HOH HOH . J 5 HOH B 76 576 158 HOH HOH . J 5 HOH B 77 577 163 HOH HOH . J 5 HOH B 78 578 164 HOH HOH . J 5 HOH B 79 579 165 HOH HOH . J 5 HOH B 80 580 166 HOH HOH . J 5 HOH B 81 581 169 HOH HOH . J 5 HOH B 82 582 172 HOH HOH . J 5 HOH B 83 583 173 HOH HOH . J 5 HOH B 84 584 177 HOH HOH . J 5 HOH B 85 585 178 HOH HOH . J 5 HOH B 86 586 185 HOH HOH . J 5 HOH B 87 587 197 HOH HOH . J 5 HOH B 88 588 203 HOH HOH . J 5 HOH B 89 589 213 HOH HOH . J 5 HOH B 90 590 214 HOH HOH . J 5 HOH B 91 591 215 HOH HOH . J 5 HOH B 92 592 217 HOH HOH . J 5 HOH B 93 593 221 HOH HOH . J 5 HOH B 94 594 223 HOH HOH . J 5 HOH B 95 595 227 HOH HOH . J 5 HOH B 96 596 228 HOH HOH . J 5 HOH B 97 597 229 HOH HOH . J 5 HOH B 98 598 230 HOH HOH . J 5 HOH B 99 599 233 HOH HOH . J 5 HOH B 100 600 239 HOH HOH . J 5 HOH B 101 601 240 HOH HOH . J 5 HOH B 102 602 249 HOH HOH . J 5 HOH B 103 603 250 HOH HOH . J 5 HOH B 104 604 255 HOH HOH . J 5 HOH B 105 605 256 HOH HOH . J 5 HOH B 106 606 260 HOH HOH . J 5 HOH B 107 607 261 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 GOL . . . E 4 0.975 9.469 20.215 1 27 ? C1 GOL 403 A 1 HETATM 2 O O1 GOL . . . E 4 2.272 9.986 20.064 1 21.72 ? O1 GOL 403 A 1 HETATM 3 C C2 GOL . . . E 4 0.376 9.324 18.831 1 29.5 ? C2 GOL 403 A 1 HETATM 4 O O2 GOL . . . E 4 0.557 10.53 18.126 1 30.98 ? O2 GOL 403 A 1 HETATM 5 C C3 GOL . . . E 4 -1.103 8.995 18.95 1 28.53 ? C3 GOL 403 A 1 HETATM 6 O O3 GOL . . . E 4 -1.775 10.026 19.639 1 28.69 ? O3 GOL 403 A 1 HETATM 7 H H11 GOL . . . E 4 0.369 10.146 20.818 1 32.4 ? H11 GOL 403 A 1 HETATM 8 H H12 GOL . . . E 4 1.012 8.5 20.712 1 32.4 ? H12 GOL 403 A 1 HETATM 9 H HO1 GOL . . . E 4 2.661 10.153 20.948 1 26.07 ? HO1 GOL 403 A 1 HETATM 10 H H2 GOL . . . E 4 0.879 8.508 18.312 1 35.39 ? H2 GOL 403 A 1 HETATM 11 H HO2 GOL . . . E 4 0.166 10.447 17.231 1 37.18 ? HO2 GOL 403 A 1 HETATM 12 H H31 GOL . . . E 4 -1.228 8.054 19.486 1 34.24 ? H31 GOL 403 A 1 HETATM 13 H H32 GOL . . . E 4 -1.534 8.877 17.956 1 34.24 ? H32 GOL 403 A 1 HETATM 14 H HO3 GOL . . . E 4 -1.51 10.893 19.268 1 34.43 ? HO3 GOL 403 A 1 # _model_server_stats.io_time_ms 13 _model_server_stats.parse_time_ms 9 _model_server_stats.create_model_time_ms 14 _model_server_stats.query_time_ms 283 _model_server_stats.encode_time_ms 7 _model_server_stats.element_count 14 #