data_4QPJ
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_model_server_result.job_id            gxfsbrboBVealjuRWzyvrg 
_model_server_result.datetime_utc      '2024-10-28 02:41:44' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          4qpj 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"F","auth_seq_id":302}' 
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_entry.id    4QPJ 
#
_exptl.entry_id    4QPJ 
_exptl.method      'X-RAY DIFFRACTION' 
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_entity.details                     ? 
_entity.formula_weight              92.094 
_entity.id                          3 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            GLYCEROL 
_entity.pdbx_number_of_molecules    5 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         120 
_cell.entry_id            4QPJ 
_cell.length_a            124.951 
_cell.length_b            124.951 
_cell.length_c            136.332 
_cell.Z_PDB               12 
_cell.pdbx_unique_axis    ? 
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_symmetry.entry_id                 4QPJ 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        154 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 32 2 1' 
#
loop_
_pdbx_struct_assembly.method_details
_pdbx_struct_assembly.oligomeric_details
_pdbx_struct_assembly.oligomeric_count
_pdbx_struct_assembly.details
_pdbx_struct_assembly.id
PISA tetrameric 4 author_and_software_defined_assembly 1 
PISA tetrameric 4 software_defined_assembly 2 
#
loop_
_pdbx_struct_assembly_gen.asym_id_list
_pdbx_struct_assembly_gen.assembly_id
_pdbx_struct_assembly_gen.oper_expression
A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R,S 1 1 
A,C,E,F,G,H,M,N,P,R 2 1 
B,D,I,J,K,L,O,Q,S 2 2 
#
loop_
_pdbx_struct_oper_list.id
_pdbx_struct_oper_list.type
_pdbx_struct_oper_list.name
_pdbx_struct_oper_list.symmetry_operation
_pdbx_struct_oper_list.matrix[1][1]
_pdbx_struct_oper_list.matrix[1][2]
_pdbx_struct_oper_list.matrix[1][3]
_pdbx_struct_oper_list.matrix[2][1]
_pdbx_struct_oper_list.matrix[2][2]
_pdbx_struct_oper_list.matrix[2][3]
_pdbx_struct_oper_list.matrix[3][1]
_pdbx_struct_oper_list.matrix[3][2]
_pdbx_struct_oper_list.matrix[3][3]
_pdbx_struct_oper_list.vector[1]
_pdbx_struct_oper_list.vector[2]
_pdbx_struct_oper_list.vector[3]
1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 
2 'crystal symmetry operation' 4_655 y+1,x,-z -0.5 0.866025 0 0.866025 0.5 0 0 0 -1 124.951 0 0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 3 E N N 
? 3 F N N 
? 3 I N N 
? 3 J N N 
? 3 M N N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
metalc ? metalc1 A O PHE 126 A PHE 92 1_555 H CA CA . A CA 304 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.712 ? 
metalc ? metalc2 A O GLU 129 A GLU 95 1_555 H CA CA . A CA 304 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.829 ? 
metalc ? metalc3 A O PRO 131 A PRO 97 1_555 H CA CA . A CA 304 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.748 ? 
metalc ? metalc4 A OD1 ASN 158 A ASN 124 1_555 G NA NA . A NA 303 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.88 ? 
metalc ? metalc5 A O ILE 161 A ILE 127 1_555 G NA NA . A NA 303 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.087 ? 
metalc ? metalc6 G NA NA . A NA 303 1_555 P O HOH . A HOH 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.178 ? 
metalc ? metalc7 G NA NA . A NA 303 1_555 P O HOH . A HOH 413 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.97 ? 
metalc ? metalc8 B O PHE 126 B PHE 92 1_555 L CA CA . B CA 304 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.857 ? 
metalc ? metalc9 B O GLU 129 B GLU 95 1_555 L CA CA . B CA 304 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.885 ? 
metalc ? metalc10 B O PRO 131 B PRO 97 1_555 L CA CA . B CA 304 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.648 ? 
metalc ? metalc11 D O ASP 43 D ASP 9 1_555 O MG MG . D MG 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.887 ? 
metalc ? metalc12 D OD2 ASP 85 D ASP 51 1_555 O MG MG . D MG 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.751 ? 
#
_chem_comp.formula           'C3 H8 O3' 
_chem_comp.formula_weight    92.094 
_chem_comp.id                GOL 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              GLYCEROL 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     GLYCERIN;PROPANE-1,2,3-TRIOL 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
C1 O1 GOL sing 129 n n 
C1 C2 GOL sing 130 n n 
C1 H11 GOL sing 131 n n 
C1 H12 GOL sing 132 n n 
O1 HO1 GOL sing 133 n n 
C2 O2 GOL sing 134 n n 
C2 C3 GOL sing 135 n n 
C2 H2 GOL sing 136 n n 
O2 HO2 GOL sing 137 n n 
C3 O3 GOL sing 138 n n 
C3 H31 GOL sing 139 n n 
C3 H32 GOL sing 140 n n 
O3 HO3 GOL sing 141 n n 
#
_atom_sites.entry_id                     4QPJ 
_atom_sites.fract_transf_matrix[1][1]    0.008003 
_atom_sites.fract_transf_matrix[1][2]    0.004621 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.009241 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.007335 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
E 3 GOL A 1 301 2 GOL GOL . 
F 3 GOL A 1 302 3 GOL GOL . 
G 4 NA A 1 303 1 NA NA . 
H 5 CA A 1 304 1 CA CA . 
I 3 GOL B 1 301 1 GOL GOL . 
J 3 GOL B 1 302 4 GOL GOL . 
K 6 CL B 1 303 1 CL CL . 
L 5 CA B 1 304 1 CA CA . 
M 3 GOL C 1 201 5 GOL GOL . 
N 5 CA C 1 202 2 CA CA . 
O 7 MG D 1 201 1 MG MG . 
P 8 HOH A 1 401 1 HOH HOH . 
P 8 HOH A 2 402 5 HOH HOH . 
P 8 HOH A 3 403 9 HOH HOH . 
P 8 HOH A 4 404 10 HOH HOH . 
P 8 HOH A 5 405 11 HOH HOH . 
P 8 HOH A 6 406 13 HOH HOH . 
P 8 HOH A 7 407 17 HOH HOH . 
P 8 HOH A 8 408 19 HOH HOH . 
P 8 HOH A 9 409 20 HOH HOH . 
P 8 HOH A 10 410 21 HOH HOH . 
P 8 HOH A 11 411 22 HOH HOH . 
P 8 HOH A 12 412 23 HOH HOH . 
P 8 HOH A 13 413 27 HOH HOH . 
Q 8 HOH B 1 401 3 HOH HOH . 
Q 8 HOH B 2 402 8 HOH HOH . 
Q 8 HOH B 3 403 24 HOH HOH . 
R 8 HOH C 1 301 6 HOH HOH . 
R 8 HOH C 2 302 12 HOH HOH . 
R 8 HOH C 3 303 14 HOH HOH . 
R 8 HOH C 4 304 15 HOH HOH . 
R 8 HOH C 5 305 16 HOH HOH . 
S 8 HOH D 1 301 4 HOH HOH . 
S 8 HOH D 2 302 18 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C C1 GOL . . . F 3 53.419 -24.602 4.912 1 57.09 ? C1 GOL 302 A 1 
HETATM 2 O O1 GOL . . . F 3 54.374 -23.619 5.249 1 68.94 ? O1 GOL 302 A 1 
HETATM 3 C C2 GOL . . . F 3 53.725 -25.755 5.844 1 60.29 ? C2 GOL 302 A 1 
HETATM 4 O O2 GOL . . . F 3 52.69 -26.716 5.883 1 56.88 ? O2 GOL 302 A 1 
HETATM 5 C C3 GOL . . . F 3 53.971 -25.132 7.206 1 54.7 ? C3 GOL 302 A 1 
HETATM 6 O O3 GOL . . . F 3 54.248 -26.169 8.115 1 67.35 ? O3 GOL 302 A 1 
#
_model_server_stats.io_time_ms              66 
_model_server_stats.parse_time_ms           6 
_model_server_stats.create_model_time_ms    6 
_model_server_stats.query_time_ms           230 
_model_server_stats.encode_time_ms          6 
_model_server_stats.element_count           6 
#