data_4QQ5 # _model_server_result.job_id ArbmPLm1lt44tnpmSaWdbA _model_server_result.datetime_utc '2024-10-13 15:16:22' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 4qq5 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"B","auth_seq_id":801}' # _entry.id 4QQ5 # _exptl.entry_id 4QQ5 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 636.743 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description N-(4-{[3-(3,5-dimethoxyphenyl)-7-{[4-(4-methylpiperazin-1-yl)phenyl]amino}-2-oxo-3,4-dihydropyrimido[4,5-d]pyrimidin-1(2H)-yl]methyl}phenyl)propanamide _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 4QQ5 _cell.length_a 139.599 _cell.length_b 139.599 _cell.length_c 49.66 _cell.Z_PDB 9 _cell.pdbx_unique_axis ? # _symmetry.entry_id 4QQ5 _symmetry.cell_setting ? _symmetry.Int_Tables_number 146 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'H 3' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id ? monomeric 1 author_defined_assembly 1 PISA trimeric 3 software_defined_assembly 2 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,B 1 1 A,B 2 1,2,3 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 2_675 -y+1,x-y+2,z -0.5 -0.866025 0 0.866025 -0.5 0 0 0 1 0 241.792561 0 3 'crystal symmetry operation' 3_465 -x+y-1,-x+1,z -0.5 0.866025 0 -0.866025 -0.5 0 0 0 1 -209.3985 120.89628 0 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id B _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _struct_conn.conn_type_id covale _struct_conn.details ? _struct_conn.id covale1 _struct_conn.ptnr1_label_asym_id A _struct_conn.ptnr1_label_atom_id SG _struct_conn.ptnr1_label_comp_id CYS _struct_conn.ptnr1_label_seq_id 47 _struct_conn.ptnr1_auth_asym_id A _struct_conn.ptnr1_auth_comp_id CYS _struct_conn.ptnr1_auth_seq_id 482 _struct_conn.ptnr1_symmetry 1_555 _struct_conn.ptnr2_label_asym_id B _struct_conn.ptnr2_label_atom_id C46 _struct_conn.ptnr2_label_comp_id 37O _struct_conn.ptnr2_label_seq_id . _struct_conn.ptnr2_auth_asym_id A _struct_conn.ptnr2_auth_comp_id 37O _struct_conn.ptnr2_auth_seq_id 801 _struct_conn.ptnr2_symmetry 1_555 _struct_conn.pdbx_ptnr1_PDB_ins_code ? _struct_conn.pdbx_ptnr1_label_alt_id ? _struct_conn.pdbx_ptnr1_standard_comp_id ? _struct_conn.pdbx_ptnr2_PDB_ins_code ? _struct_conn.pdbx_ptnr2_label_alt_id ? _struct_conn.pdbx_ptnr3_PDB_ins_code ? _struct_conn.pdbx_ptnr3_label_alt_id ? _struct_conn.pdbx_ptnr3_label_asym_id ? _struct_conn.pdbx_ptnr3_label_atom_id ? _struct_conn.pdbx_ptnr3_label_comp_id ? _struct_conn.pdbx_ptnr3_label_seq_id ? _struct_conn.pdbx_PDB_id ? _struct_conn.pdbx_dist_value 1.747 _struct_conn.pdbx_value_order ? # _chem_comp.formula 'C35 H40 N8 O4' _chem_comp.formula_weight 636.743 _chem_comp.id 37O _chem_comp.mon_nstd_flag . _chem_comp.name N-(4-{[3-(3,5-dimethoxyphenyl)-7-{[4-(4-methylpiperazin-1-yl)phenyl]amino}-2-oxo-3,4-dihydropyrimido[4,5-d]pyrimidin-1(2H)-yl]methyl}phenyl)propanamide _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C36 N07 37O sing 1 n n C36 C37 37O sing 2 n n C22 C23 37O sing 3 n n C22 N21 37O sing 4 n n C38 C37 37O doub 5 n y C38 C39 37O sing 6 n y C23 N18 37O sing 7 n n O32 C34 37O sing 8 n n O32 C27 37O sing 9 n n N07 C08 37O sing 10 n n N07 C05 37O sing 11 n n C37 C42 37O sing 12 n y C24 N21 37O sing 13 n n O35 C08 37O doub 14 n n C39 C40 37O doub 15 n y N21 C20 37O sing 16 n n O47 C44 37O doub 17 n n C08 N09 37O sing 18 n n C26 C27 37O doub 19 n y C26 C25 37O sing 20 n y C05 N04 37O doub 21 n y C05 C06 37O sing 22 n y N04 C03 37O sing 23 n y C14 C13 37O doub 24 n y C14 C15 37O sing 25 n y N18 C15 37O sing 26 n n N18 C19 37O sing 27 n n C10 C06 37O sing 28 n n C10 N09 37O sing 29 n n C13 C12 37O sing 30 n y C15 C16 37O doub 31 n y C27 C28 37O sing 32 n y C06 C01 37O doub 33 n y N09 C25 37O sing 34 n n C03 N11 37O sing 35 n n C03 N02 37O doub 36 n y C12 N11 37O sing 37 n n C12 C17 37O doub 38 n y C16 C17 37O sing 39 n y C42 C41 37O doub 40 n y C01 N02 37O sing 41 n y C20 C19 37O sing 42 n n C25 C30 37O doub 43 n y C40 C41 37O sing 44 n y C40 N43 37O sing 45 n n C44 N43 37O sing 46 n n C44 C45 37O sing 47 n n C28 C29 37O doub 48 n y C46 C45 37O sing 49 n n C30 C29 37O sing 50 n y C29 O31 37O sing 51 n n O31 C33 37O sing 52 n n C01 H1 37O sing 53 n n C10 H2 37O sing 54 n n C10 H3 37O sing 55 n n N11 H4 37O sing 56 n n C13 H5 37O sing 57 n n C14 H6 37O sing 58 n n C16 H7 37O sing 59 n n C17 H8 37O sing 60 n n C19 H9 37O sing 61 n n C20 H10 37O sing 62 n n C22 H11 37O sing 63 n n C23 H12 37O sing 64 n n C24 H13 37O sing 65 n n C24 H14 37O sing 66 n n C24 H15 37O sing 67 n n C26 H16 37O sing 68 n n C28 H17 37O sing 69 n n C30 H18 37O sing 70 n n C33 H19 37O sing 71 n n C33 H20 37O sing 72 n n C33 H21 37O sing 73 n n C34 H22 37O sing 74 n n C34 H23 37O sing 75 n n C34 H24 37O sing 76 n n C36 H25 37O sing 77 n n C36 H26 37O sing 78 n n C38 H27 37O sing 79 n n C39 H28 37O sing 80 n n C41 H29 37O sing 81 n n C42 H30 37O sing 82 n n N43 H31 37O sing 83 n n C45 H32 37O sing 84 n n C45 H33 37O sing 85 n n C46 H34 37O sing 86 n n C46 H35 37O sing 87 n n C46 H36 37O sing 88 n n C19 H37 37O sing 89 n n C20 H38 37O sing 90 n n C22 H39 37O sing 91 n n C23 H40 37O sing 92 n n # _atom_sites.entry_id 4QQ5 _atom_sites.fract_transf_matrix[1][1] 0.007163 _atom_sites.fract_transf_matrix[1][2] 0.004136 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.008272 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.020137 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # _pdbx_nonpoly_scheme.asym_id B _pdbx_nonpoly_scheme.entity_id 2 _pdbx_nonpoly_scheme.mon_id 37O _pdbx_nonpoly_scheme.pdb_strand_id A _pdbx_nonpoly_scheme.ndb_seq_num 1 _pdbx_nonpoly_scheme.pdb_seq_num 801 _pdbx_nonpoly_scheme.auth_seq_num 1 _pdbx_nonpoly_scheme.pdb_mon_id 37O _pdbx_nonpoly_scheme.auth_mon_id LIG _pdbx_nonpoly_scheme.pdb_ins_code . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C01 37O . . . B 2 -64.525 146.109 2.618 1 23.69 ? C01 37O 801 A 1 HETATM 2 N N02 37O . . . B 2 -64.321 147.43 2.676 1 22.72 ? N02 37O 801 A 1 HETATM 3 C C03 37O . . . B 2 -63.161 147.997 2.373 1 27 ? C03 37O 801 A 1 HETATM 4 N N04 37O . . . B 2 -62.114 147.252 1.949 1 26.81 ? N04 37O 801 A 1 HETATM 5 C C05 37O . . . B 2 -62.229 145.901 1.846 1 27.23 ? C05 37O 801 A 1 HETATM 6 C C06 37O . . . B 2 -63.461 145.287 2.188 1 24.24 ? C06 37O 801 A 1 HETATM 7 N N07 37O . . . B 2 -61.142 145.079 1.385 1 30.65 ? N07 37O 801 A 1 HETATM 8 C C08 37O . . . B 2 -61.119 143.722 1.768 1 26.78 ? C08 37O 801 A 1 HETATM 9 N N09 37O . . . B 2 -62.298 143.198 2.356 1 27.43 ? N09 37O 801 A 1 HETATM 10 C C10 37O . . . B 2 -63.527 143.865 2.049 1 23 ? C10 37O 801 A 1 HETATM 11 N N11 37O . . . B 2 -63.085 149.428 2.5 1 32.55 ? N11 37O 801 A 1 HETATM 12 C C12 37O . . . B 2 -61.914 150.246 2.394 1 38.3 ? C12 37O 801 A 1 HETATM 13 C C13 37O . . . B 2 -62.154 151.71 2.099 1 39.69 ? C13 37O 801 A 1 HETATM 14 C C14 37O . . . B 2 -61.111 152.557 1.992 1 42.75 ? C14 37O 801 A 1 HETATM 15 C C15 37O . . . B 2 -59.677 152.046 2.175 1 46.62 ? C15 37O 801 A 1 HETATM 16 C C16 37O . . . B 2 -59.446 150.737 2.448 1 45.08 ? C16 37O 801 A 1 HETATM 17 C C17 37O . . . B 2 -60.63 149.778 2.576 1 43.78 ? C17 37O 801 A 1 HETATM 18 N N18 37O . . . B 2 -58.635 153.015 2.044 1 52.32 ? N18 37O 801 A 1 HETATM 19 C C19 37O . . . B 2 -57.448 152.957 2.821 1 53.61 ? C19 37O 801 A 1 HETATM 20 C C20 37O . . . B 2 -56.492 153.927 2.653 1 58.39 ? C20 37O 801 A 1 HETATM 21 N N21 37O . . . B 2 -56.689 154.982 1.722 1 60.95 ? N21 37O 801 A 1 HETATM 22 C C22 37O . . . B 2 -57.887 155.038 0.945 1 61.56 ? C22 37O 801 A 1 HETATM 23 C C23 37O . . . B 2 -58.833 154.073 1.112 1 59.08 ? C23 37O 801 A 1 HETATM 24 C C24 37O . . . B 2 -55.671 156.014 1.547 1 61.96 ? C24 37O 801 A 1 HETATM 25 C C25 37O . . . B 2 -62.401 141.798 2.727 1 30.46 ? C25 37O 801 A 1 HETATM 26 C C26 37O . . . B 2 -62.108 140.797 1.797 1 30.52 ? C26 37O 801 A 1 HETATM 27 C C27 37O . . . B 2 -62.225 139.458 2.178 1 31.72 ? C27 37O 801 A 1 HETATM 28 C C28 37O . . . B 2 -62.638 139.133 3.501 1 30 ? C28 37O 801 A 1 HETATM 29 C C29 37O . . . B 2 -62.932 140.16 4.419 1 28.13 ? C29 37O 801 A 1 HETATM 30 C C30 37O . . . B 2 -62.818 141.496 4.022 1 29.75 ? C30 37O 801 A 1 HETATM 31 O O31 37O . . . B 2 -63.37 139.903 5.764 1 26.85 ? O31 37O 801 A 1 HETATM 32 O O32 37O . . . B 2 -61.913 138.459 1.216 1 29.94 ? O32 37O 801 A 1 HETATM 33 C C33 37O . . . B 2 -63.733 138.535 6.073 1 26.68 ? C33 37O 801 A 1 HETATM 34 C C34 37O . . . B 2 -62.275 137.146 1.574 1 27.28 ? C34 37O 801 A 1 HETATM 35 O O35 37O . . . B 2 -59.967 142.951 1.579 1 26.67 ? O35 37O 801 A 1 HETATM 36 C C36 37O . . . B 2 -60.005 145.721 0.709 1 37.4 ? C36 37O 801 A 1 HETATM 37 C C37 37O . . . B 2 -58.694 145.835 1.474 1 44.02 ? C37 37O 801 A 1 HETATM 38 C C38 37O . . . B 2 -57.593 145.18 1.003 1 47.48 ? C38 37O 801 A 1 HETATM 39 C C39 37O . . . B 2 -56.383 145.296 1.678 1 51.93 ? C39 37O 801 A 1 HETATM 40 C C40 37O . . . B 2 -56.308 146.082 2.823 1 56.24 ? C40 37O 801 A 1 HETATM 41 C C41 37O . . . B 2 -57.418 146.747 3.269 1 53.49 ? C41 37O 801 A 1 HETATM 42 C C42 37O . . . B 2 -58.622 146.633 2.603 1 47.84 ? C42 37O 801 A 1 HETATM 43 N N43 37O . . . B 2 -55.096 146.277 3.564 1 61.99 ? N43 37O 801 A 1 HETATM 44 C C44 37O . . . B 2 -53.806 146.441 2.942 1 68.99 ? C44 37O 801 A 1 HETATM 45 C C45 37O . . . B 2 -52.587 146.699 3.837 1 75.45 ? C45 37O 801 A 1 HETATM 46 C C46 37O . . . B 2 -51.429 145.724 3.587 1 77.79 ? C46 37O 801 A 1 HETATM 47 O O47 37O . . . B 2 -53.663 146.366 1.738 1 69.83 ? O47 37O 801 A 1 # _model_server_stats.io_time_ms 19 _model_server_stats.parse_time_ms 11 _model_server_stats.create_model_time_ms 3 _model_server_stats.query_time_ms 275 _model_server_stats.encode_time_ms 3 _model_server_stats.element_count 47 #