data_4QQC # _model_server_result.job_id ebqF3KJvWlkzhnXSyjav2A _model_server_result.datetime_utc '2024-10-13 15:24:42' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 4qqc # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"B","auth_seq_id":801}' # _entry.id 4QQC # _exptl.entry_id 4QQC _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 636.743 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description N-(4-{[3-(3,5-dimethoxyphenyl)-7-{[4-(4-methylpiperazin-1-yl)phenyl]amino}-2-oxo-3,4-dihydropyrimido[4,5-d]pyrimidin-1(2H)-yl]methyl}phenyl)propanamide _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 4QQC _cell.length_a 139.83 _cell.length_b 139.83 _cell.length_c 49.486 _cell.Z_PDB 9 _cell.pdbx_unique_axis ? # _symmetry.entry_id 4QQC _symmetry.cell_setting ? _symmetry.Int_Tables_number 146 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'H 3' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id B _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _struct_conn.conn_type_id covale _struct_conn.details ? _struct_conn.id covale1 _struct_conn.ptnr1_label_asym_id A _struct_conn.ptnr1_label_atom_id SG _struct_conn.ptnr1_label_comp_id CYS _struct_conn.ptnr1_label_seq_id 47 _struct_conn.ptnr1_auth_asym_id A _struct_conn.ptnr1_auth_comp_id CYS _struct_conn.ptnr1_auth_seq_id 477 _struct_conn.ptnr1_symmetry 1_555 _struct_conn.ptnr2_label_asym_id B _struct_conn.ptnr2_label_atom_id C46 _struct_conn.ptnr2_label_comp_id 37O _struct_conn.ptnr2_label_seq_id . _struct_conn.ptnr2_auth_asym_id A _struct_conn.ptnr2_auth_comp_id 37O _struct_conn.ptnr2_auth_seq_id 801 _struct_conn.ptnr2_symmetry 1_555 _struct_conn.pdbx_ptnr1_PDB_ins_code ? _struct_conn.pdbx_ptnr1_label_alt_id ? _struct_conn.pdbx_ptnr1_standard_comp_id ? _struct_conn.pdbx_ptnr2_PDB_ins_code ? _struct_conn.pdbx_ptnr2_label_alt_id ? _struct_conn.pdbx_ptnr3_PDB_ins_code ? _struct_conn.pdbx_ptnr3_label_alt_id ? _struct_conn.pdbx_ptnr3_label_asym_id ? _struct_conn.pdbx_ptnr3_label_atom_id ? _struct_conn.pdbx_ptnr3_label_comp_id ? _struct_conn.pdbx_ptnr3_label_seq_id ? _struct_conn.pdbx_PDB_id ? _struct_conn.pdbx_dist_value 1.642 _struct_conn.pdbx_value_order ? # _chem_comp.formula 'C35 H40 N8 O4' _chem_comp.formula_weight 636.743 _chem_comp.id 37O _chem_comp.mon_nstd_flag . _chem_comp.name N-(4-{[3-(3,5-dimethoxyphenyl)-7-{[4-(4-methylpiperazin-1-yl)phenyl]amino}-2-oxo-3,4-dihydropyrimido[4,5-d]pyrimidin-1(2H)-yl]methyl}phenyl)propanamide _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C36 N07 37O sing 1 n n C36 C37 37O sing 2 n n C22 C23 37O sing 3 n n C22 N21 37O sing 4 n n C38 C37 37O doub 5 n y C38 C39 37O sing 6 n y C23 N18 37O sing 7 n n O32 C34 37O sing 8 n n O32 C27 37O sing 9 n n N07 C08 37O sing 10 n n N07 C05 37O sing 11 n n C37 C42 37O sing 12 n y C24 N21 37O sing 13 n n O35 C08 37O doub 14 n n C39 C40 37O doub 15 n y N21 C20 37O sing 16 n n O47 C44 37O doub 17 n n C08 N09 37O sing 18 n n C26 C27 37O doub 19 n y C26 C25 37O sing 20 n y C05 N04 37O doub 21 n y C05 C06 37O sing 22 n y N04 C03 37O sing 23 n y C14 C13 37O doub 24 n y C14 C15 37O sing 25 n y N18 C15 37O sing 26 n n N18 C19 37O sing 27 n n C10 C06 37O sing 28 n n C10 N09 37O sing 29 n n C13 C12 37O sing 30 n y C15 C16 37O doub 31 n y C27 C28 37O sing 32 n y C06 C01 37O doub 33 n y N09 C25 37O sing 34 n n C03 N11 37O sing 35 n n C03 N02 37O doub 36 n y C12 N11 37O sing 37 n n C12 C17 37O doub 38 n y C16 C17 37O sing 39 n y C42 C41 37O doub 40 n y C01 N02 37O sing 41 n y C20 C19 37O sing 42 n n C25 C30 37O doub 43 n y C40 C41 37O sing 44 n y C40 N43 37O sing 45 n n C44 N43 37O sing 46 n n C44 C45 37O sing 47 n n C28 C29 37O doub 48 n y C46 C45 37O sing 49 n n C30 C29 37O sing 50 n y C29 O31 37O sing 51 n n O31 C33 37O sing 52 n n C01 H1 37O sing 53 n n C10 H2 37O sing 54 n n C10 H3 37O sing 55 n n N11 H4 37O sing 56 n n C13 H5 37O sing 57 n n C14 H6 37O sing 58 n n C16 H7 37O sing 59 n n C17 H8 37O sing 60 n n C19 H9 37O sing 61 n n C20 H10 37O sing 62 n n C22 H11 37O sing 63 n n C23 H12 37O sing 64 n n C24 H13 37O sing 65 n n C24 H14 37O sing 66 n n C24 H15 37O sing 67 n n C26 H16 37O sing 68 n n C28 H17 37O sing 69 n n C30 H18 37O sing 70 n n C33 H19 37O sing 71 n n C33 H20 37O sing 72 n n C33 H21 37O sing 73 n n C34 H22 37O sing 74 n n C34 H23 37O sing 75 n n C34 H24 37O sing 76 n n C36 H25 37O sing 77 n n C36 H26 37O sing 78 n n C38 H27 37O sing 79 n n C39 H28 37O sing 80 n n C41 H29 37O sing 81 n n C42 H30 37O sing 82 n n N43 H31 37O sing 83 n n C45 H32 37O sing 84 n n C45 H33 37O sing 85 n n C46 H34 37O sing 86 n n C46 H35 37O sing 87 n n C46 H36 37O sing 88 n n C19 H37 37O sing 89 n n C20 H38 37O sing 90 n n C22 H39 37O sing 91 n n C23 H40 37O sing 92 n n # _atom_sites.entry_id 4QQC _atom_sites.fract_transf_matrix[1][1] 0.007152 _atom_sites.fract_transf_matrix[1][2] 0.004129 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.008258 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.020208 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 37O A 1 801 1 37O 37O . C 3 SO4 A 1 802 1 SO4 SO4 . D 4 HOH A 1 901 1 HOH HOH . D 4 HOH A 2 902 2 HOH HOH . D 4 HOH A 3 903 3 HOH HOH . D 4 HOH A 4 904 5 HOH HOH . D 4 HOH A 5 905 6 HOH HOH . D 4 HOH A 6 906 7 HOH HOH . D 4 HOH A 7 907 8 HOH HOH . D 4 HOH A 8 908 9 HOH HOH . D 4 HOH A 9 909 10 HOH HOH . D 4 HOH A 10 910 11 HOH HOH . D 4 HOH A 11 911 12 HOH HOH . D 4 HOH A 12 912 13 HOH HOH . D 4 HOH A 13 913 14 HOH HOH . D 4 HOH A 14 914 15 HOH HOH . D 4 HOH A 15 915 16 HOH HOH . D 4 HOH A 16 916 17 HOH HOH . D 4 HOH A 17 917 18 HOH HOH . D 4 HOH A 18 918 19 HOH HOH . D 4 HOH A 19 919 20 HOH HOH . D 4 HOH A 20 920 21 HOH HOH . D 4 HOH A 21 921 22 HOH HOH . D 4 HOH A 22 922 23 HOH HOH . D 4 HOH A 23 923 24 HOH HOH . D 4 HOH A 24 924 25 HOH HOH . D 4 HOH A 25 925 26 HOH HOH . D 4 HOH A 26 926 27 HOH HOH . D 4 HOH A 27 927 28 HOH HOH . D 4 HOH A 28 928 29 HOH HOH . D 4 HOH A 29 929 31 HOH HOH . D 4 HOH A 30 930 32 HOH HOH . D 4 HOH A 31 931 33 HOH HOH . D 4 HOH A 32 932 34 HOH HOH . D 4 HOH A 33 933 35 HOH HOH . D 4 HOH A 34 934 37 HOH HOH . D 4 HOH A 35 935 38 HOH HOH . D 4 HOH A 36 936 39 HOH HOH . D 4 HOH A 37 937 40 HOH HOH . D 4 HOH A 38 938 41 HOH HOH . D 4 HOH A 39 939 42 HOH HOH . D 4 HOH A 40 940 43 HOH HOH . D 4 HOH A 41 941 44 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C01 37O . . . B 2 -24.585 8.523 -1.484 1 33.28 ? C01 37O 801 A 1 HETATM 2 N N02 37O . . . B 2 -25.845 9.024 -1.382 1 34.79 ? N02 37O 801 A 1 HETATM 3 C C03 37O . . . B 2 -26.837 8.244 -1.02 1 33.73 ? C03 37O 801 A 1 HETATM 4 N N04 37O . . . B 2 -26.742 7.035 -0.726 1 33.26 ? N04 37O 801 A 1 HETATM 5 C C05 37O . . . B 2 -25.628 6.395 -0.761 1 36.41 ? C05 37O 801 A 1 HETATM 6 C C06 37O . . . B 2 -24.538 7.102 -1.136 1 33.59 ? C06 37O 801 A 1 HETATM 7 N N07 37O . . . B 2 -25.524 5.086 -0.491 1 43.01 ? N07 37O 801 A 1 HETATM 8 C C08 37O . . . B 2 -24.313 4.504 -0.547 1 38.05 ? C08 37O 801 A 1 HETATM 9 N N09 37O . . . B 2 -23.227 5.237 -0.898 1 28.93 ? N09 37O 801 A 1 HETATM 10 C C10 37O . . . B 2 -23.334 6.498 -1.211 1 32.02 ? C10 37O 801 A 1 HETATM 11 N N11 37O . . . B 2 -28.074 8.896 -0.929 1 34.88 ? N11 37O 801 A 1 HETATM 12 C C12 37O . . . B 2 -29.338 8.299 -0.907 1 38.35 ? C12 37O 801 A 1 HETATM 13 C C13 37O . . . B 2 -30.421 9.095 -0.687 1 39.16 ? C13 37O 801 A 1 HETATM 14 C C14 37O . . . B 2 -31.702 8.603 -0.652 1 40.48 ? C14 37O 801 A 1 HETATM 15 C C15 37O . . . B 2 -31.874 7.255 -0.821 1 47.95 ? C15 37O 801 A 1 HETATM 16 C C16 37O . . . B 2 -30.794 6.448 -1.06 1 45.25 ? C16 37O 801 A 1 HETATM 17 C C17 37O . . . B 2 -29.513 6.964 -1.106 1 41.5 ? C17 37O 801 A 1 HETATM 18 N N18 37O . . . B 2 -33.201 6.674 -0.837 1 55.54 ? N18 37O 801 A 1 HETATM 19 C C19 37O . . . B 2 -33.338 5.375 -1.154 1 57.84 ? C19 37O 801 A 1 HETATM 20 C C20 37O . . . B 2 -34.591 4.793 -1.223 1 63.01 ? C20 37O 801 A 1 HETATM 21 N N21 37O . . . B 2 -35.675 5.543 -0.985 1 67.51 ? N21 37O 801 A 1 HETATM 22 C C22 37O . . . B 2 -35.543 6.852 -0.692 1 67.46 ? C22 37O 801 A 1 HETATM 23 C C23 37O . . . B 2 -34.282 7.429 -0.63 1 61.2 ? C23 37O 801 A 1 HETATM 24 C C24 37O . . . B 2 -36.968 4.94 -1.058 1 67.46 ? C24 37O 801 A 1 HETATM 25 C C25 37O . . . B 2 -21.905 4.679 -1.064 1 30.77 ? C25 37O 801 A 1 HETATM 26 C C26 37O . . . B 2 -21.127 4.211 -0.037 1 27.59 ? C26 37O 801 A 1 HETATM 27 C C27 37O . . . B 2 -19.854 3.712 -0.328 1 30.06 ? C27 37O 801 A 1 HETATM 28 C C28 37O . . . B 2 -19.394 3.682 -1.632 1 31.01 ? C28 37O 801 A 1 HETATM 29 C C29 37O . . . B 2 -20.19 4.144 -2.692 1 33.26 ? C29 37O 801 A 1 HETATM 30 C C30 37O . . . B 2 -21.444 4.654 -2.377 1 32.75 ? C30 37O 801 A 1 HETATM 31 O O31 37O . . . B 2 -19.805 4.139 -4.025 1 30.75 ? O31 37O 801 A 1 HETATM 32 O O32 37O . . . B 2 -19.083 3.236 0.737 1 33.19 ? O32 37O 801 A 1 HETATM 33 C C33 37O . . . B 2 -18.485 3.884 -4.327 1 28.68 ? C33 37O 801 A 1 HETATM 34 C C34 37O . . . B 2 -17.696 3.311 0.65 1 29.36 ? C34 37O 801 A 1 HETATM 35 O O35 37O . . . B 2 -24.174 3.172 -0.227 1 38.44 ? O35 37O 801 A 1 HETATM 36 C C36 37O . . . B 2 -26.718 4.408 -0.002 1 51.75 ? C36 37O 801 A 1 HETATM 37 C C37 37O . . . B 2 -27.321 3.147 -0.547 1 64.76 ? C37 37O 801 A 1 HETATM 38 C C38 37O . . . B 2 -27.364 2.02 0.247 1 70.86 ? C38 37O 801 A 1 HETATM 39 C C39 37O . . . B 2 -27.948 0.825 -0.232 1 78.14 ? C39 37O 801 A 1 HETATM 40 C C40 37O . . . B 2 -28.53 0.774 -1.492 1 84.78 ? C40 37O 801 A 1 HETATM 41 C C41 37O . . . B 2 -28.488 1.927 -2.277 1 81.17 ? C41 37O 801 A 1 HETATM 42 C C42 37O . . . B 2 -27.887 3.13 -1.808 1 72.37 ? C42 37O 801 A 1 HETATM 43 N N43 37O . . . B 2 -29.166 -0.427 -2.027 1 96.02 ? N43 37O 801 A 1 HETATM 44 C C44 37O . . . B 2 -29.953 -1.377 -1.313 1 101.19 ? C44 37O 801 A 1 HETATM 45 C C45 37O . . . B 2 -30.538 -2.541 -2.047 1 101.9 ? C45 37O 801 A 1 HETATM 46 C C46 37O . . . B 2 -30.232 -3.857 -1.377 1 102.1 ? C46 37O 801 A 1 HETATM 47 O O47 37O . . . B 2 -30.162 -1.271 -0.129 1 102.25 ? O47 37O 801 A 1 # _model_server_stats.io_time_ms 7 _model_server_stats.parse_time_ms 13 _model_server_stats.create_model_time_ms 3 _model_server_stats.query_time_ms 291 _model_server_stats.encode_time_ms 6 _model_server_stats.element_count 47 #