data_4QQU # _model_server_result.job_id KinnVdwDkyr4HMLsjt4DfQ _model_server_result.datetime_utc '2024-10-20 21:05:32' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 4qqu # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"F","auth_seq_id":805}' # _entry.id 4QQU # _exptl.entry_id 4QQU _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 703.657 _entity.id 5 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'N-[4-({[(6S)-2-amino-4-oxo-3,4,5,6,7,8-hexahydropteridin-6-yl]methyl}amino)benzoyl]-L-gamma-glutamyl-L-gamma-glutamyl-L-glutamic acid' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 4QQU _cell.length_a 74.978 _cell.length_b 99.102 _cell.length_c 103.902 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 4QQU _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 21 21 21' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 5 _struct_asym.id F _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A NE2 HIS 679 A HIS 657 1_555 C ZN ZN . A ZN 802 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.211 ? metalc ? metalc2 A SG CYS 681 A CYS 659 1_555 C ZN ZN . A ZN 802 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.18 ? metalc ? metalc3 A SG CYS 761 A CYS 739 1_555 C ZN ZN . A ZN 802 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.364 ? metalc ? metalc4 B SD HCS . A HCS 801 1_555 C ZN ZN . A ZN 802 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.94 ? # _chem_comp.formula 'C29 H37 N9 O12' _chem_comp.formula_weight 703.657 _chem_comp.id 39S _chem_comp.mon_nstd_flag . _chem_comp.name 'N-[4-({[(6S)-2-amino-4-oxo-3,4,5,6,7,8-hexahydropteridin-6-yl]methyl}amino)benzoyl]-L-gamma-glutamyl-L-gamma-glutamyl-L-glutamic acid' _chem_comp.type peptide-like _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag O C3 39S doub 1 n n O7 C27 39S doub 2 n n O1 C3 39S sing 3 n n C3 C2 39S sing 4 n n C27 O6 39S sing 5 n n C27 C11 39S sing 6 n n C2 C1 39S sing 7 n n O4 C12 39S doub 8 n n C11 N2 39S sing 9 n n C11 C10 39S sing 10 n n O2 C4 39S doub 11 n n C C1 39S sing 12 n n C N 39S sing 13 n n C C29 39S sing 14 n n C12 N2 39S sing 15 n n C12 C13 39S sing 16 n n O11 C29 39S doub 17 n n C26 C13 39S doub 18 n y C26 C25 39S sing 19 n y C13 C14 39S sing 20 n y C10 C9 39S sing 21 n n C25 C16 39S doub 22 n y C4 N 39S sing 23 n n C4 C5 39S sing 24 n n C29 O10 39S sing 25 n n C17 N3 39S sing 26 n n C17 C18 39S sing 27 n n C14 C15 39S doub 28 n y C16 C15 39S sing 29 n y C16 N3 39S sing 30 n n C5 C6 39S sing 31 n n C9 C8 39S sing 32 n n C6 C7 39S sing 33 n n C18 N8 39S sing 34 n n C18 C19 39S sing 35 n n N1 C8 39S sing 36 n n N1 C7 39S sing 37 n n O8 C28 39S doub 38 n n C8 O3 39S doub 39 n n N8 C21 39S sing 40 n n C7 C28 39S sing 41 n n C28 O9 39S sing 42 n n C19 N4 39S sing 43 n n O5 C22 39S doub 44 n n C21 C22 39S sing 45 n n C21 C20 39S doub 46 n n N4 C20 39S sing 47 n n C22 N5 39S sing 48 n n C20 N7 39S sing 49 n n N5 C23 39S sing 50 n n N7 C23 39S doub 51 n n C23 N6 39S sing 52 n n N6 H1 39S sing 53 n n N6 H2 39S sing 54 n n N8 H4 39S sing 55 n n C18 H6 39S sing 56 n n C19 H7 39S sing 57 n n C19 H8 39S sing 58 n n N4 H9 39S sing 59 n n C17 H10 39S sing 60 n n C17 H11 39S sing 61 n n N3 H12 39S sing 62 n n C26 H13 39S sing 63 n n C25 H14 39S sing 64 n n C15 H15 39S sing 65 n n C14 H16 39S sing 66 n n N2 H17 39S sing 67 n n C11 H18 39S sing 68 n n C10 H19 39S sing 69 n n C10 H20 39S sing 70 n n C9 H21 39S sing 71 n n C9 H22 39S sing 72 n n O6 H23 39S sing 73 n n N1 H24 39S sing 74 n n C7 H25 39S sing 75 n n C6 H26 39S sing 76 n n C6 H27 39S sing 77 n n C5 H28 39S sing 78 n n C5 H29 39S sing 79 n n O9 H30 39S sing 80 n n N H31 39S sing 81 n n C H32 39S sing 82 n n C1 H33 39S sing 83 n n C1 H34 39S sing 84 n n C2 H35 39S sing 85 n n C2 H36 39S sing 86 n n O1 H37 39S sing 87 n n O10 H38 39S sing 88 n n N5 H39 39S sing 89 n n # _atom_sites.entry_id 4QQU _atom_sites.fract_transf_matrix[1][1] 0.013337 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.010091 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.009624 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 HCS A 1 801 1 HCS HCS . C 3 ZN A 1 802 1 ZN ZN . D 4 PO4 A 1 803 1 PO4 PO4 . E 4 PO4 A 1 804 2 PO4 PO4 . F 5 39S A 1 805 1 39S 39S . G 6 HOH A 1 901 1 HOH HOH . G 6 HOH A 2 902 2 HOH HOH . G 6 HOH A 3 903 3 HOH HOH . G 6 HOH A 4 904 4 HOH HOH . G 6 HOH A 5 905 5 HOH HOH . G 6 HOH A 6 906 6 HOH HOH . G 6 HOH A 7 907 7 HOH HOH . G 6 HOH A 8 908 8 HOH HOH . G 6 HOH A 9 909 9 HOH HOH . G 6 HOH A 10 910 10 HOH HOH . G 6 HOH A 11 911 11 HOH HOH . G 6 HOH A 12 912 12 HOH HOH . G 6 HOH A 13 913 13 HOH HOH . G 6 HOH A 14 914 14 HOH HOH . G 6 HOH A 15 915 15 HOH HOH . G 6 HOH A 16 916 16 HOH HOH . G 6 HOH A 17 917 17 HOH HOH . G 6 HOH A 18 918 18 HOH HOH . G 6 HOH A 19 919 19 HOH HOH . G 6 HOH A 20 920 20 HOH HOH . G 6 HOH A 21 921 21 HOH HOH . G 6 HOH A 22 922 22 HOH HOH . G 6 HOH A 23 923 23 HOH HOH . G 6 HOH A 24 924 24 HOH HOH . G 6 HOH A 25 925 25 HOH HOH . G 6 HOH A 26 926 29 HOH HOH . G 6 HOH A 27 927 30 HOH HOH . G 6 HOH A 28 928 32 HOH HOH . G 6 HOH A 29 929 33 HOH HOH . G 6 HOH A 30 930 34 HOH HOH . G 6 HOH A 31 931 35 HOH HOH . G 6 HOH A 32 932 37 HOH HOH . G 6 HOH A 33 933 38 HOH HOH . G 6 HOH A 34 934 39 HOH HOH . G 6 HOH A 35 935 40 HOH HOH . G 6 HOH A 36 936 41 HOH HOH . G 6 HOH A 37 937 42 HOH HOH . G 6 HOH A 38 938 43 HOH HOH . G 6 HOH A 39 939 44 HOH HOH . G 6 HOH A 40 940 52 HOH HOH . G 6 HOH A 41 941 53 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 N N7 39S . . . F 5 21.546 -34.604 -24.705 1 20.64 ? N7 39S 805 A 1 HETATM 2 C C23 39S . . . F 5 21.375 -35.917 -24.407 1 21.95 ? C23 39S 805 A 1 HETATM 3 N N6 39S . . . F 5 20.399 -36.261 -23.515 1 22.56 ? N6 39S 805 A 1 HETATM 4 N N5 39S . . . F 5 22.125 -36.899 -24.949 1 21.65 ? N5 39S 805 A 1 HETATM 5 C C22 39S . . . F 5 23.093 -36.651 -25.832 1 21.76 ? C22 39S 805 A 1 HETATM 6 O O5 39S . . . F 5 23.775 -37.613 -26.297 1 23.43 ? O5 39S 805 A 1 HETATM 7 C C21 39S . . . F 5 23.332 -35.231 -26.197 1 20.9 ? C21 39S 805 A 1 HETATM 8 N N8 39S . . . F 5 24.327 -34.81 -27.088 1 20.99 ? N8 39S 805 A 1 HETATM 9 C C18 39S . . . F 5 23.987 -33.578 -27.817 1 20.48 ? C18 39S 805 A 1 HETATM 10 C C19 39S . . . F 5 23.67 -32.507 -26.801 1 20.84 ? C19 39S 805 A 1 HETATM 11 N N4 39S . . . F 5 22.664 -32.951 -25.861 1 21.31 ? N4 39S 805 A 1 HETATM 12 C C20 39S . . . F 5 22.488 -34.234 -25.563 1 20.54 ? C20 39S 805 A 1 HETATM 13 C C17 39S . . . F 5 22.908 -33.716 -28.894 1 20.06 ? C17 39S 805 A 1 HETATM 14 N N3 39S . . . F 5 21.675 -34.383 -28.454 1 20.58 ? N3 39S 805 A 1 HETATM 15 C C13 39S . . . F 5 20.374 -38.225 -29.476 1 21.9 ? C13 39S 805 A 1 HETATM 16 C C26 39S . . . F 5 21.631 -37.795 -29.819 1 21.16 ? C26 39S 805 A 1 HETATM 17 C C25 39S . . . F 5 22.076 -36.54 -29.468 1 20.84 ? C25 39S 805 A 1 HETATM 18 C C16 39S . . . F 5 21.275 -35.652 -28.784 1 20.27 ? C16 39S 805 A 1 HETATM 19 C C15 39S . . . F 5 20.005 -36.074 -28.468 1 20.18 ? C15 39S 805 A 1 HETATM 20 C C14 39S . . . F 5 19.56 -37.34 -28.8 1 20.95 ? C14 39S 805 A 1 HETATM 21 C C12 39S . . . F 5 19.955 -39.613 -29.885 1 24 ? C12 39S 805 A 1 HETATM 22 O O4 39S . . . F 5 20.787 -40.313 -30.472 1 27.01 ? O4 39S 805 A 1 HETATM 23 N N2 39S . . . F 5 18.711 -40.054 -29.698 1 24.24 ? N2 39S 805 A 1 HETATM 24 C C11 39S . . . F 5 18.265 -41.257 -30.376 1 25.68 ? C11 39S 805 A 1 HETATM 25 C C27 39S . . . F 5 17.127 -40.856 -31.256 1 25.85 ? C27 39S 805 A 1 HETATM 26 O O7 39S . . . F 5 17.296 -40.905 -32.465 1 24.46 ? O7 39S 805 A 1 HETATM 27 C C10 39S . . . F 5 17.863 -42.423 -29.476 1 27.03 ? C10 39S 805 A 1 HETATM 28 C C9 39S . . . F 5 18.29 -42.267 -28.021 1 29.08 ? C9 39S 805 A 1 HETATM 29 C C8 39S . . . F 5 17.61 -43.307 -27.15 1 30.01 ? C8 39S 805 A 1 HETATM 30 O O3 39S . . . F 5 17.062 -42.905 -26.13 1 29.59 ? O3 39S 805 A 1 HETATM 31 O O6 39S . . . F 5 15.955 -40.452 -30.719 1 27.07 ? O6 39S 805 A 1 HETATM 32 N N1 39S . . . F 5 17.645 -44.585 -27.598 1 30.19 ? N1 39S 805 A 1 HETATM 33 C C7 39S . . . F 5 16.877 -45.714 -27.063 1 29.73 ? C7 39S 805 A 1 HETATM 34 C C28 39S . . . F 5 17.65 -47.037 -26.952 1 30.61 ? C28 39S 805 A 1 HETATM 35 O O8 39S . . . F 5 18.816 -47.212 -27.567 1 33.3 ? O8 39S 805 A 1 HETATM 36 C C6 39S . . . F 5 15.612 -45.813 -27.953 1 28.55 ? C6 39S 805 A 1 HETATM 37 C C5 39S . . . F 5 15.356 -47.181 -28.602 1 28.23 ? C5 39S 805 A 1 HETATM 38 C C4 39S . . . F 5 14.079 -47.264 -29.416 1 27.04 ? C4 39S 805 A 1 HETATM 39 O O2 39S . . . F 5 13.7 -46.342 -30.086 1 26.75 ? O2 39S 805 A 1 HETATM 40 O O9 39S . . . F 5 17.262 -48.022 -26.319 1 29.16 ? O9 39S 805 A 1 HETATM 41 N N 39S . . . F 5 13.388 -48.391 -29.327 1 27.71 ? N 39S 805 A 1 HETATM 42 C C 39S . . . F 5 12.073 -48.586 -29.922 1 29.07 ? C 39S 805 A 1 HETATM 43 C C29 39S . . . F 5 10.958 -47.797 -29.263 1 29.23 ? C29 39S 805 A 1 HETATM 44 O O11 39S . . . F 5 9.908 -47.576 -29.866 1 30.45 ? O11 39S 805 A 1 HETATM 45 C C1 39S . . . F 5 11.708 -50.071 -29.855 1 29.63 ? C1 39S 805 A 1 HETATM 46 C C2 39S . . . F 5 12.737 -50.932 -30.575 1 30.63 ? C2 39S 805 A 1 HETATM 47 C C3 39S . . . F 5 12.838 -50.455 -31.994 1 30.87 ? C3 39S 805 A 1 HETATM 48 O O 39S . . . F 5 13.986 -49.892 -32.415 1 32.85 ? O 39S 805 A 1 HETATM 49 O O1 39S . . . F 5 11.859 -50.578 -32.725 1 28.86 ? O1 39S 805 A 1 HETATM 50 O O10 39S . . . F 5 11.084 -47.329 -28.018 1 27.62 ? O10 39S 805 A 1 # _model_server_stats.io_time_ms 19 _model_server_stats.parse_time_ms 11 _model_server_stats.create_model_time_ms 27 _model_server_stats.query_time_ms 369 _model_server_stats.encode_time_ms 7 _model_server_stats.element_count 50 #