data_4QQX # _model_server_result.job_id X6Na6rhEFJ2duxQTcRcJvw _model_server_result.datetime_utc '2024-11-22 20:59:58' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 4qqx # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"N","auth_seq_id":1003}' # _entry.id 4QQX # _exptl.entry_id 4QQX _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 507.181 _entity.id 4 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description "ADENOSINE-5'-TRIPHOSPHATE" _entity.pdbx_number_of_molecules 4 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 104.1 _cell.angle_gamma 90 _cell.entry_id 4QQX _cell.length_a 87.25 _cell.length_b 222.807 _cell.length_c 125.087 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 4QQX _symmetry.cell_setting ? _symmetry.Int_Tables_number 4 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1 21 1' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id ? dimeric 2 author_defined_assembly 1 ? dimeric 2 author_defined_assembly 2 ? dimeric 2 author_defined_assembly 3 ? dimeric 2 author_defined_assembly 4 PISA tetrameric 4 software_defined_assembly 5 PISA tetrameric 4 software_defined_assembly 6 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression C,D,L,M,N 1 1 A,B,I,J,K 2 1 E,F,O,P,Q 3 1 G,H,R,S,T 4 1 A,B,C,D,I,J,K,L,M,N 5 1 E,F,G,H,O,P,Q,R,S,T 6 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 4 K N N ? 4 N N N ? 4 Q N N ? 4 T N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A NE2 HIS 57 A HIS 37 1_555 J FE FE . A FE 1002 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.14 ? metalc ? metalc2 A NE2 HIS 103 A HIS 83 1_555 J FE FE . A FE 1002 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.281 ? metalc ? metalc3 A OD1 ASP 104 A ASP 84 1_555 I FE FE . A FE 1001 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.984 ? metalc ? metalc4 A OD2 ASP 104 A ASP 84 1_555 J FE FE . A FE 1002 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.825 ? metalc ? metalc5 A NE2 HIS 135 A HIS 115 1_555 I FE FE . A FE 1001 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.151 ? metalc ? metalc6 A NE2 HIS 169 A HIS 149 1_555 I FE FE . A FE 1001 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.413 ? metalc ? metalc7 A NE2 HIS 170 A HIS 150 1_555 I FE FE . A FE 1001 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.204 ? metalc ? metalc8 A OD2 ASP 235 A ASP 215 1_555 J FE FE . A FE 1002 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.217 ? metalc ? metalc9 A OD1 ASP 235 A ASP 215 1_555 J FE FE . A FE 1002 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.266 ? metalc ? metalc10 I FE FE . A FE 1001 1_555 B OP1 DA 11 B DA 12 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.244 ? metalc ? metalc11 J FE FE . A FE 1002 1_555 B OP2 DA 11 B DA 12 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.667 ? metalc ? metalc12 J FE FE . A FE 1002 1_555 B OP1 DA 11 B DA 12 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.708 ? metalc ? metalc13 C NE2 HIS 57 C HIS 37 1_555 M FE FE . C FE 1002 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.227 ? metalc ? metalc14 C NE2 HIS 103 C HIS 83 1_555 M FE FE . C FE 1002 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.371 ? metalc ? metalc15 C OD1 ASP 104 C ASP 84 1_555 L FE FE . C FE 1001 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.154 ? metalc ? metalc16 C OD2 ASP 104 C ASP 84 1_555 M FE FE . C FE 1002 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.947 ? metalc ? metalc17 C NE2 HIS 135 C HIS 115 1_555 L FE FE . C FE 1001 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.223 ? metalc ? metalc18 C NE2 HIS 169 C HIS 149 1_555 L FE FE . C FE 1001 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.973 ? metalc ? metalc19 C NE2 HIS 170 C HIS 150 1_555 L FE FE . C FE 1001 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.096 ? metalc ? metalc20 C OD1 ASP 235 C ASP 215 1_555 M FE FE . C FE 1002 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.172 ? metalc ? metalc21 C OD2 ASP 235 C ASP 215 1_555 M FE FE . C FE 1002 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.529 ? metalc ? metalc22 L FE FE . C FE 1001 1_555 D OP1 DA 11 D DA 12 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.65 ? metalc ? metalc23 M FE FE . C FE 1002 1_555 D OP1 DA 11 D DA 12 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.537 ? metalc ? metalc24 E NE2 HIS 57 E HIS 37 1_555 P FE FE . E FE 1002 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.998 ? metalc ? metalc25 E NE2 HIS 103 E HIS 83 1_555 P FE FE . E FE 1002 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.163 ? metalc ? metalc26 E OD1 ASP 104 E ASP 84 1_555 O FE FE . E FE 1001 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.982 ? metalc ? metalc27 E OD2 ASP 104 E ASP 84 1_555 P FE FE . E FE 1002 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.83 ? metalc ? metalc28 E NE2 HIS 135 E HIS 115 1_555 O FE FE . E FE 1001 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.128 ? metalc ? metalc29 E NE2 HIS 169 E HIS 149 1_555 O FE FE . E FE 1001 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.2 ? metalc ? metalc30 E NE2 HIS 170 E HIS 150 1_555 O FE FE . E FE 1001 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.112 ? metalc ? metalc31 E OD1 ASP 235 E ASP 215 1_555 P FE FE . E FE 1002 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.405 ? metalc ? metalc32 E OD2 ASP 235 E ASP 215 1_555 P FE FE . E FE 1002 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.625 ? metalc ? metalc33 O FE FE . E FE 1001 1_555 F OP1 DA 11 F DA 12 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.068 ? metalc ? metalc34 P FE FE . E FE 1002 1_555 F OP1 DA 11 F DA 12 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.667 ? metalc ? metalc35 G NE2 HIS 57 G HIS 37 1_555 S FE FE . G FE 1002 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.289 ? metalc ? metalc36 G NE2 HIS 103 G HIS 83 1_555 S FE FE . G FE 1002 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.986 ? metalc ? metalc37 G OD1 ASP 104 G ASP 84 1_555 R FE FE . G FE 1001 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.163 ? metalc ? metalc38 G OD2 ASP 104 G ASP 84 1_555 S FE FE . G FE 1002 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.889 ? metalc ? metalc39 G NE2 HIS 135 G HIS 115 1_555 R FE FE . G FE 1001 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.233 ? metalc ? metalc40 G NE2 HIS 169 G HIS 149 1_555 R FE FE . G FE 1001 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.304 ? metalc ? metalc41 G NE2 HIS 170 G HIS 150 1_555 R FE FE . G FE 1001 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.178 ? metalc ? metalc42 G OD1 ASP 235 G ASP 215 1_555 S FE FE . G FE 1002 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.169 ? metalc ? metalc43 G OD2 ASP 235 G ASP 215 1_555 S FE FE . G FE 1002 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.425 ? metalc ? metalc44 R FE FE . G FE 1001 1_555 H OP1 DA 11 H DA 12 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.271 ? # _chem_comp.formula 'C10 H16 N5 O13 P3' _chem_comp.formula_weight 507.181 _chem_comp.id ATP _chem_comp.mon_nstd_flag . _chem_comp.name "ADENOSINE-5'-TRIPHOSPHATE" _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag PG O1G ATP doub 70 n n PG O2G ATP sing 71 n n PG O3G ATP sing 72 n n PG O3B ATP sing 73 n n O2G HOG2 ATP sing 74 n n O3G HOG3 ATP sing 75 n n PB O1B ATP doub 76 n n PB O2B ATP sing 77 n n PB O3B ATP sing 78 n n PB O3A ATP sing 79 n n O2B HOB2 ATP sing 80 n n PA O1A ATP doub 81 n n PA O2A ATP sing 82 n n PA O3A ATP sing 83 n n PA O5' ATP sing 84 n n O2A HOA2 ATP sing 85 n n O5' C5' ATP sing 86 n n C5' C4' ATP sing 87 n n C5' "H5'1" ATP sing 88 n n C5' "H5'2" ATP sing 89 n n C4' O4' ATP sing 90 n n C4' C3' ATP sing 91 n n C4' H4' ATP sing 92 n n O4' C1' ATP sing 93 n n C3' O3' ATP sing 94 n n C3' C2' ATP sing 95 n n C3' H3' ATP sing 96 n n O3' HO3' ATP sing 97 n n C2' O2' ATP sing 98 n n C2' C1' ATP sing 99 n n C2' H2' ATP sing 100 n n O2' HO2' ATP sing 101 n n C1' N9 ATP sing 102 n n C1' H1' ATP sing 103 n n N9 C8 ATP sing 104 n y N9 C4 ATP sing 105 n y C8 N7 ATP doub 106 n y C8 H8 ATP sing 107 n n N7 C5 ATP sing 108 n y C5 C6 ATP sing 109 n y C5 C4 ATP doub 110 n y C6 N6 ATP sing 111 n n C6 N1 ATP doub 112 n y N6 HN61 ATP sing 113 n n N6 HN62 ATP sing 114 n n N1 C2 ATP sing 115 n y C2 N3 ATP doub 116 n y C2 H2 ATP sing 117 n n N3 C4 ATP sing 118 n y # _atom_sites.entry_id 4QQX _atom_sites.fract_transf_matrix[1][1] 0.011461 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.002879 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.004488 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.008243 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code I 3 FE A 1 1001 951 FE FE . J 3 FE A 1 1002 952 FE FE . K 4 ATP A 1 1003 960 ATP ATP . L 3 FE C 1 1001 951 FE FE . M 3 FE C 1 1002 952 FE FE . N 4 ATP C 1 1003 960 ATP ATP . O 3 FE E 1 1001 951 FE FE . P 3 FE E 1 1002 952 FE FE . Q 4 ATP E 1 1003 960 ATP ATP . R 3 FE G 1 1001 951 FE FE . S 3 FE G 1 1002 952 FE FE . T 4 ATP G 1 1003 960 ATP ATP . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 P PG ATP . . . N 4 -81.223 52.61 46.263 1 159.92 ? PG ATP 1003 C 1 HETATM 2 O O1G ATP . . . N 4 -82.296 51.66 45.813 1 130.2 ? O1G ATP 1003 C 1 HETATM 3 O O2G ATP . . . N 4 -80.927 52.595 47.728 1 160.88 ? O2G ATP 1003 C 1 HETATM 4 O O3G ATP . . . N 4 -79.996 52.569 45.404 1 142.29 ? O3G ATP 1003 C 1 HETATM 5 P PB ATP . . . N 4 -82.615 54.76 47.246 1 139.62 ? PB ATP 1003 C 1 HETATM 6 O O1B ATP . . . N 4 -83.653 55.668 46.67 1 132.84 ? O1B ATP 1003 C 1 HETATM 7 O O2B ATP . . . N 4 -81.617 55.269 48.231 1 134.23 ? O2B ATP 1003 C 1 HETATM 8 O O3B ATP . . . N 4 -81.832 54.075 46.045 1 144.07 ? O3B ATP 1003 C 1 HETATM 9 P PA ATP . . . N 4 -84.81 53.605 48.389 1 132.16 ? PA ATP 1003 C 1 HETATM 10 O O1A ATP . . . N 4 -85.196 52.32 49.057 1 124.89 ? O1A ATP 1003 C 1 HETATM 11 O O2A ATP . . . N 4 -85.635 54.184 47.289 1 131.04 ? O2A ATP 1003 C 1 HETATM 12 O O3A ATP . . . N 4 -83.314 53.488 47.884 1 145.9 ? O3A ATP 1003 C 1 HETATM 13 O O5' ATP . . . N 4 -84.628 54.73 49.486 1 138.81 ? O5' ATP 1003 C 1 HETATM 14 C C5' ATP . . . N 4 -85.585 55.766 49.593 1 141.74 ? C5' ATP 1003 C 1 HETATM 15 C C4' ATP . . . N 4 -86.144 55.743 51.001 1 144.25 ? C4' ATP 1003 C 1 HETATM 16 O O4' ATP . . . N 4 -87.06 56.812 51.151 1 142.06 ? O4' ATP 1003 C 1 HETATM 17 C C3' ATP . . . N 4 -86.923 54.469 51.219 1 143.95 ? C3' ATP 1003 C 1 HETATM 18 O O3' ATP . . . N 4 -86.709 53.994 52.543 1 140.58 ? O3' ATP 1003 C 1 HETATM 19 C C2' ATP . . . N 4 -88.365 54.851 51.176 1 138.73 ? C2' ATP 1003 C 1 HETATM 20 O O2' ATP . . . N 4 -88.981 54.122 52.223 1 134.85 ? O2' ATP 1003 C 1 HETATM 21 C C1' ATP . . . N 4 -88.33 56.311 51.534 1 145 ? C1' ATP 1003 C 1 HETATM 22 N N9 ATP . . . N 4 -89.377 57.056 50.82 1 154.85 ? N9 ATP 1003 C 1 HETATM 23 C C8 ATP . . . N 4 -90.64 56.657 50.62 1 154.48 ? C8 ATP 1003 C 1 HETATM 24 N N7 ATP . . . N 4 -91.341 57.594 49.943 1 154.08 ? N7 ATP 1003 C 1 HETATM 25 C C5 ATP . . . N 4 -90.508 58.613 49.712 1 156.04 ? C5 ATP 1003 C 1 HETATM 26 C C6 ATP . . . N 4 -90.6 59.915 49.048 1 160.59 ? C6 ATP 1003 C 1 HETATM 27 N N6 ATP . . . N 4 -91.769 60.295 48.49 1 155.89 ? N6 ATP 1003 C 1 HETATM 28 N N1 ATP . . . N 4 -89.491 60.691 49.019 1 164.44 ? N1 ATP 1003 C 1 HETATM 29 C C2 ATP . . . N 4 -88.331 60.309 49.577 1 152.81 ? C2 ATP 1003 C 1 HETATM 30 N N3 ATP . . . N 4 -88.185 59.131 50.199 1 156.85 ? N3 ATP 1003 C 1 HETATM 31 C C4 ATP . . . N 4 -89.215 58.26 50.292 1 158.52 ? C4 ATP 1003 C 1 # _model_server_stats.io_time_ms 0 _model_server_stats.parse_time_ms 9 _model_server_stats.create_model_time_ms 49 _model_server_stats.query_time_ms 263 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 31 #