data_4QQX # _model_server_result.job_id JgYNwZOb00gsf2PNIvr57g _model_server_result.datetime_utc '2024-11-22 20:29:14' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 4qqx # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"T","auth_seq_id":1003}' # _entry.id 4QQX # _exptl.entry_id 4QQX _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 507.181 _entity.id 4 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description "ADENOSINE-5'-TRIPHOSPHATE" _entity.pdbx_number_of_molecules 4 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 104.1 _cell.angle_gamma 90 _cell.entry_id 4QQX _cell.length_a 87.25 _cell.length_b 222.807 _cell.length_c 125.087 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 4QQX _symmetry.cell_setting ? _symmetry.Int_Tables_number 4 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1 21 1' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id ? dimeric 2 author_defined_assembly 1 ? dimeric 2 author_defined_assembly 2 ? dimeric 2 author_defined_assembly 3 ? dimeric 2 author_defined_assembly 4 PISA tetrameric 4 software_defined_assembly 5 PISA tetrameric 4 software_defined_assembly 6 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression C,D,L,M,N 1 1 A,B,I,J,K 2 1 E,F,O,P,Q 3 1 G,H,R,S,T 4 1 A,B,C,D,I,J,K,L,M,N 5 1 E,F,G,H,O,P,Q,R,S,T 6 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 4 K N N ? 4 N N N ? 4 Q N N ? 4 T N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A NE2 HIS 57 A HIS 37 1_555 J FE FE . A FE 1002 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.14 ? metalc ? metalc2 A NE2 HIS 103 A HIS 83 1_555 J FE FE . A FE 1002 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.281 ? metalc ? metalc3 A OD1 ASP 104 A ASP 84 1_555 I FE FE . A FE 1001 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.984 ? metalc ? metalc4 A OD2 ASP 104 A ASP 84 1_555 J FE FE . A FE 1002 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.825 ? metalc ? metalc5 A NE2 HIS 135 A HIS 115 1_555 I FE FE . A FE 1001 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.151 ? metalc ? metalc6 A NE2 HIS 169 A HIS 149 1_555 I FE FE . A FE 1001 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.413 ? metalc ? metalc7 A NE2 HIS 170 A HIS 150 1_555 I FE FE . A FE 1001 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.204 ? metalc ? metalc8 A OD2 ASP 235 A ASP 215 1_555 J FE FE . A FE 1002 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.217 ? metalc ? metalc9 A OD1 ASP 235 A ASP 215 1_555 J FE FE . A FE 1002 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.266 ? metalc ? metalc10 I FE FE . A FE 1001 1_555 B OP1 DA 11 B DA 12 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.244 ? metalc ? metalc11 J FE FE . A FE 1002 1_555 B OP2 DA 11 B DA 12 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.667 ? metalc ? metalc12 J FE FE . A FE 1002 1_555 B OP1 DA 11 B DA 12 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.708 ? metalc ? metalc13 C NE2 HIS 57 C HIS 37 1_555 M FE FE . C FE 1002 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.227 ? metalc ? metalc14 C NE2 HIS 103 C HIS 83 1_555 M FE FE . C FE 1002 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.371 ? metalc ? metalc15 C OD1 ASP 104 C ASP 84 1_555 L FE FE . C FE 1001 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.154 ? metalc ? metalc16 C OD2 ASP 104 C ASP 84 1_555 M FE FE . C FE 1002 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.947 ? metalc ? metalc17 C NE2 HIS 135 C HIS 115 1_555 L FE FE . C FE 1001 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.223 ? metalc ? metalc18 C NE2 HIS 169 C HIS 149 1_555 L FE FE . C FE 1001 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.973 ? metalc ? metalc19 C NE2 HIS 170 C HIS 150 1_555 L FE FE . C FE 1001 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.096 ? metalc ? metalc20 C OD1 ASP 235 C ASP 215 1_555 M FE FE . C FE 1002 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.172 ? metalc ? metalc21 C OD2 ASP 235 C ASP 215 1_555 M FE FE . C FE 1002 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.529 ? metalc ? metalc22 L FE FE . C FE 1001 1_555 D OP1 DA 11 D DA 12 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.65 ? metalc ? metalc23 M FE FE . C FE 1002 1_555 D OP1 DA 11 D DA 12 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.537 ? metalc ? metalc24 E NE2 HIS 57 E HIS 37 1_555 P FE FE . E FE 1002 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.998 ? metalc ? metalc25 E NE2 HIS 103 E HIS 83 1_555 P FE FE . E FE 1002 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.163 ? metalc ? metalc26 E OD1 ASP 104 E ASP 84 1_555 O FE FE . E FE 1001 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.982 ? metalc ? metalc27 E OD2 ASP 104 E ASP 84 1_555 P FE FE . E FE 1002 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.83 ? metalc ? metalc28 E NE2 HIS 135 E HIS 115 1_555 O FE FE . E FE 1001 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.128 ? metalc ? metalc29 E NE2 HIS 169 E HIS 149 1_555 O FE FE . E FE 1001 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.2 ? metalc ? metalc30 E NE2 HIS 170 E HIS 150 1_555 O FE FE . E FE 1001 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.112 ? metalc ? metalc31 E OD1 ASP 235 E ASP 215 1_555 P FE FE . E FE 1002 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.405 ? metalc ? metalc32 E OD2 ASP 235 E ASP 215 1_555 P FE FE . E FE 1002 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.625 ? metalc ? metalc33 O FE FE . E FE 1001 1_555 F OP1 DA 11 F DA 12 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.068 ? metalc ? metalc34 P FE FE . E FE 1002 1_555 F OP1 DA 11 F DA 12 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.667 ? metalc ? metalc35 G NE2 HIS 57 G HIS 37 1_555 S FE FE . G FE 1002 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.289 ? metalc ? metalc36 G NE2 HIS 103 G HIS 83 1_555 S FE FE . G FE 1002 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.986 ? metalc ? metalc37 G OD1 ASP 104 G ASP 84 1_555 R FE FE . G FE 1001 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.163 ? metalc ? metalc38 G OD2 ASP 104 G ASP 84 1_555 S FE FE . G FE 1002 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.889 ? metalc ? metalc39 G NE2 HIS 135 G HIS 115 1_555 R FE FE . G FE 1001 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.233 ? metalc ? metalc40 G NE2 HIS 169 G HIS 149 1_555 R FE FE . G FE 1001 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.304 ? metalc ? metalc41 G NE2 HIS 170 G HIS 150 1_555 R FE FE . G FE 1001 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.178 ? metalc ? metalc42 G OD1 ASP 235 G ASP 215 1_555 S FE FE . G FE 1002 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.169 ? metalc ? metalc43 G OD2 ASP 235 G ASP 215 1_555 S FE FE . G FE 1002 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.425 ? metalc ? metalc44 R FE FE . G FE 1001 1_555 H OP1 DA 11 H DA 12 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.271 ? # _chem_comp.formula 'C10 H16 N5 O13 P3' _chem_comp.formula_weight 507.181 _chem_comp.id ATP _chem_comp.mon_nstd_flag . _chem_comp.name "ADENOSINE-5'-TRIPHOSPHATE" _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag PG O1G ATP doub 70 n n PG O2G ATP sing 71 n n PG O3G ATP sing 72 n n PG O3B ATP sing 73 n n O2G HOG2 ATP sing 74 n n O3G HOG3 ATP sing 75 n n PB O1B ATP doub 76 n n PB O2B ATP sing 77 n n PB O3B ATP sing 78 n n PB O3A ATP sing 79 n n O2B HOB2 ATP sing 80 n n PA O1A ATP doub 81 n n PA O2A ATP sing 82 n n PA O3A ATP sing 83 n n PA O5' ATP sing 84 n n O2A HOA2 ATP sing 85 n n O5' C5' ATP sing 86 n n C5' C4' ATP sing 87 n n C5' "H5'1" ATP sing 88 n n C5' "H5'2" ATP sing 89 n n C4' O4' ATP sing 90 n n C4' C3' ATP sing 91 n n C4' H4' ATP sing 92 n n O4' C1' ATP sing 93 n n C3' O3' ATP sing 94 n n C3' C2' ATP sing 95 n n C3' H3' ATP sing 96 n n O3' HO3' ATP sing 97 n n C2' O2' ATP sing 98 n n C2' C1' ATP sing 99 n n C2' H2' ATP sing 100 n n O2' HO2' ATP sing 101 n n C1' N9 ATP sing 102 n n C1' H1' ATP sing 103 n n N9 C8 ATP sing 104 n y N9 C4 ATP sing 105 n y C8 N7 ATP doub 106 n y C8 H8 ATP sing 107 n n N7 C5 ATP sing 108 n y C5 C6 ATP sing 109 n y C5 C4 ATP doub 110 n y C6 N6 ATP sing 111 n n C6 N1 ATP doub 112 n y N6 HN61 ATP sing 113 n n N6 HN62 ATP sing 114 n n N1 C2 ATP sing 115 n y C2 N3 ATP doub 116 n y C2 H2 ATP sing 117 n n N3 C4 ATP sing 118 n y # _atom_sites.entry_id 4QQX _atom_sites.fract_transf_matrix[1][1] 0.011461 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.002879 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.004488 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.008243 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code I 3 FE A 1 1001 951 FE FE . J 3 FE A 1 1002 952 FE FE . K 4 ATP A 1 1003 960 ATP ATP . L 3 FE C 1 1001 951 FE FE . M 3 FE C 1 1002 952 FE FE . N 4 ATP C 1 1003 960 ATP ATP . O 3 FE E 1 1001 951 FE FE . P 3 FE E 1 1002 952 FE FE . Q 4 ATP E 1 1003 960 ATP ATP . R 3 FE G 1 1001 951 FE FE . S 3 FE G 1 1002 952 FE FE . T 4 ATP G 1 1003 960 ATP ATP . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 P PG ATP . . . T 4 -88.437 -18.793 -36.94 1 158.86 ? PG ATP 1003 G 1 HETATM 2 O O1G ATP . . . T 4 -86.944 -18.927 -36.987 1 147.82 ? O1G ATP 1003 G 1 HETATM 3 O O2G ATP . . . T 4 -89.026 -18.443 -38.266 1 161.28 ? O2G ATP 1003 G 1 HETATM 4 O O3G ATP . . . T 4 -88.93 -17.931 -35.818 1 137.13 ? O3G ATP 1003 G 1 HETATM 5 P PB ATP . . . T 4 -88.857 -21.558 -37.508 1 148.67 ? PB ATP 1003 G 1 HETATM 6 O O1B ATP . . . T 4 -87.887 -22.531 -36.909 1 128.48 ? O1B ATP 1003 G 1 HETATM 7 O O2B ATP . . . T 4 -88.682 -21.073 -38.909 1 150.56 ? O2B ATP 1003 G 1 HETATM 8 O O3B ATP . . . T 4 -89.008 -20.259 -36.577 1 153.22 ? O3B ATP 1003 G 1 HETATM 9 P PA ATP . . . T 4 -91.552 -21.322 -37.755 1 133.47 ? PA ATP 1003 G 1 HETATM 10 O O1A ATP . . . T 4 -91.071 -19.951 -38.047 1 139.96 ? O1A ATP 1003 G 1 HETATM 11 O O2A ATP . . . T 4 -92.581 -21.541 -36.698 1 131.23 ? O2A ATP 1003 G 1 HETATM 12 O O3A ATP . . . T 4 -90.293 -22.226 -37.427 1 141.32 ? O3A ATP 1003 G 1 HETATM 13 O O5' ATP . . . T 4 -92.125 -21.932 -39.098 1 145.76 ? O5' ATP 1003 G 1 HETATM 14 C C5' ATP . . . T 4 -93.282 -22.751 -39.012 1 151.61 ? C5' ATP 1003 G 1 HETATM 15 C C4' ATP . . . T 4 -94.084 -22.73 -40.303 1 153.91 ? C4' ATP 1003 G 1 HETATM 16 O O4' ATP . . . T 4 -94.723 -23.986 -40.421 1 155.47 ? O4' ATP 1003 G 1 HETATM 17 C C3' ATP . . . T 4 -95.222 -21.741 -40.246 1 149.68 ? C3' ATP 1003 G 1 HETATM 18 O O3' ATP . . . T 4 -95.726 -21.54 -41.56 1 148.45 ? O3' ATP 1003 G 1 HETATM 19 C C2' ATP . . . T 4 -96.304 -22.473 -39.522 1 148.69 ? C2' ATP 1003 G 1 HETATM 20 O O2' ATP . . . T 4 -97.549 -22.051 -40.069 1 143.76 ? O2' ATP 1003 G 1 HETATM 21 C C1' ATP . . . T 4 -96.014 -23.926 -39.836 1 154.9 ? C1' ATP 1003 G 1 HETATM 22 N N9 ATP . . . T 4 -95.94 -24.695 -38.586 1 153.96 ? N9 ATP 1003 G 1 HETATM 23 C C8 ATP . . . T 4 -95.447 -24.248 -37.428 1 155.19 ? C8 ATP 1003 G 1 HETATM 24 N N7 ATP . . . T 4 -95.518 -25.196 -36.468 1 158.1 ? N7 ATP 1003 G 1 HETATM 25 C C5 ATP . . . T 4 -96.067 -26.277 -37.021 1 159.66 ? C5 ATP 1003 G 1 HETATM 26 C C6 ATP . . . T 4 -96.421 -27.621 -36.558 1 159.57 ? C6 ATP 1003 G 1 HETATM 27 N N6 ATP . . . T 4 -96.196 -28.001 -35.283 1 154.67 ? N6 ATP 1003 G 1 HETATM 28 N N1 ATP . . . T 4 -96.974 -28.447 -37.456 1 159.68 ? N1 ATP 1003 G 1 HETATM 29 C C2 ATP . . . T 4 -97.195 -28.075 -38.722 1 159.34 ? C2 ATP 1003 G 1 HETATM 30 N N3 ATP . . . T 4 -96.895 -26.869 -39.208 1 156.3 ? N3 ATP 1003 G 1 HETATM 31 C C4 ATP . . . T 4 -96.338 -25.944 -38.415 1 155.75 ? C4 ATP 1003 G 1 # _model_server_stats.io_time_ms 24 _model_server_stats.parse_time_ms 16 _model_server_stats.create_model_time_ms 65 _model_server_stats.query_time_ms 293 _model_server_stats.encode_time_ms 9 _model_server_stats.element_count 31 #