data_4QQZ # _model_server_result.job_id Wh_Rl_TBMafH7oOfnMsNbA _model_server_result.datetime_utc '2024-11-05 00:54:51' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 4qqz # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"Q","auth_seq_id":1003}' # _entry.id 4QQZ # _exptl.entry_id 4QQZ _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 506.196 _entity.id 4 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'PHOSPHOAMINOPHOSPHONIC ACID-ADENYLATE ESTER' _entity.pdbx_number_of_molecules 4 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 104.29 _cell.angle_gamma 90 _cell.entry_id 4QQZ _cell.length_a 86.917 _cell.length_b 222.064 _cell.length_c 124.898 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 4QQZ _symmetry.cell_setting ? _symmetry.Int_Tables_number 4 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1 21 1' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id ? dimeric 2 author_defined_assembly 1 ? dimeric 2 author_defined_assembly 2 ? dimeric 2 author_defined_assembly 3 ? dimeric 2 author_defined_assembly 4 PISA tetrameric 4 software_defined_assembly 5 PISA tetrameric 4 software_defined_assembly 6 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,B,I,J,K 1 1 C,D,L,M,N 2 1 E,F,O,P,Q 3 1 G,H,R,S,T 4 1 A,B,C,D,I,J,K,L,M,N 5 1 E,F,G,H,O,P,Q,R,S,T 6 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 4 K N N ? 4 N N N ? 4 Q N N ? 4 T N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A NE2 HIS 57 A HIS 37 1_555 J FE FE . A FE 1002 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.219 ? metalc ? metalc2 A NE2 HIS 103 A HIS 83 1_555 J FE FE . A FE 1002 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.155 ? metalc ? metalc3 A OD1 ASP 104 A ASP 84 1_555 I FE FE . A FE 1001 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.091 ? metalc ? metalc4 A OD2 ASP 104 A ASP 84 1_555 J FE FE . A FE 1002 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.938 ? metalc ? metalc5 A NE2 HIS 135 A HIS 115 1_555 I FE FE . A FE 1001 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.26 ? metalc ? metalc6 A NE2 HIS 169 A HIS 149 1_555 I FE FE . A FE 1001 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.25 ? metalc ? metalc7 A NE2 HIS 170 A HIS 150 1_555 I FE FE . A FE 1001 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.297 ? metalc ? metalc8 A OD1 ASP 235 A ASP 215 1_555 J FE FE . A FE 1002 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.109 ? metalc ? metalc9 A OD2 ASP 235 A ASP 215 1_555 J FE FE . A FE 1002 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.47 ? metalc ? metalc10 I FE FE . A FE 1001 1_555 B OP1 DA 11 B DA 12 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.178 ? metalc ? metalc11 J FE FE . A FE 1002 1_555 B OP2 DA 11 B DA 12 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.292 ? metalc ? metalc12 C NE2 HIS 57 C HIS 37 1_555 M FE FE . C FE 1002 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.299 ? metalc ? metalc13 C NE2 HIS 103 C HIS 83 1_555 M FE FE . C FE 1002 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.175 ? metalc ? metalc14 C OD1 ASP 104 C ASP 84 1_555 L FE FE . C FE 1001 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.054 ? metalc ? metalc15 C OD2 ASP 104 C ASP 84 1_555 M FE FE . C FE 1002 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.96 ? metalc ? metalc16 C NE2 HIS 135 C HIS 115 1_555 L FE FE . C FE 1001 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.225 ? metalc ? metalc17 C NE2 HIS 169 C HIS 149 1_555 L FE FE . C FE 1001 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.953 ? metalc ? metalc18 C NE2 HIS 170 C HIS 150 1_555 L FE FE . C FE 1001 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.155 ? metalc ? metalc19 C OD1 ASP 235 C ASP 215 1_555 M FE FE . C FE 1002 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.29 ? metalc ? metalc20 C OD2 ASP 235 C ASP 215 1_555 M FE FE . C FE 1002 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.481 ? metalc ? metalc21 L FE FE . C FE 1001 1_555 D OP1 DA 11 D DA 12 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.412 ? metalc ? metalc22 M FE FE . C FE 1002 1_555 D OP2 DA 11 D DA 12 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.549 ? metalc ? metalc23 E NE2 HIS 57 E HIS 37 1_555 P FE FE . E FE 1002 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.258 ? metalc ? metalc24 E NE2 HIS 103 E HIS 83 1_555 P FE FE . E FE 1002 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.266 ? metalc ? metalc25 E OD1 ASP 104 E ASP 84 1_555 O FE FE . E FE 1001 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.077 ? metalc ? metalc26 E OD2 ASP 104 E ASP 84 1_555 P FE FE . E FE 1002 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.986 ? metalc ? metalc27 E NE2 HIS 135 E HIS 115 1_555 O FE FE . E FE 1001 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.265 ? metalc ? metalc28 E NE2 HIS 169 E HIS 149 1_555 O FE FE . E FE 1001 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.208 ? metalc ? metalc29 E NE2 HIS 170 E HIS 150 1_555 O FE FE . E FE 1001 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.153 ? metalc ? metalc30 E OD1 ASP 235 E ASP 215 1_555 P FE FE . E FE 1002 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.213 ? metalc ? metalc31 E OD2 ASP 235 E ASP 215 1_555 P FE FE . E FE 1002 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.492 ? metalc ? metalc32 O FE FE . E FE 1001 1_555 F OP1 DA 11 F DA 12 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.184 ? metalc ? metalc33 P FE FE . E FE 1002 1_555 F OP2 DA 11 F DA 12 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.655 ? metalc ? metalc34 P FE FE . E FE 1002 1_555 F OP1 DA 11 F DA 12 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.789 ? metalc ? metalc35 G NE2 HIS 57 G HIS 37 1_555 S FE FE . G FE 1002 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.438 ? metalc ? metalc36 G NE2 HIS 103 G HIS 83 1_555 S FE FE . G FE 1002 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.057 ? metalc ? metalc37 G OD1 ASP 104 G ASP 84 1_555 R FE FE . G FE 1001 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.993 ? metalc ? metalc38 G OD2 ASP 104 G ASP 84 1_555 S FE FE . G FE 1002 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.826 ? metalc ? metalc39 G NE2 HIS 135 G HIS 115 1_555 R FE FE . G FE 1001 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.11 ? metalc ? metalc40 G NE2 HIS 169 G HIS 149 1_555 R FE FE . G FE 1001 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.108 ? metalc ? metalc41 G NE2 HIS 170 G HIS 150 1_555 R FE FE . G FE 1001 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.296 ? metalc ? metalc42 G OD1 ASP 235 G ASP 215 1_555 S FE FE . G FE 1002 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.252 ? metalc ? metalc43 G OD2 ASP 235 G ASP 215 1_555 S FE FE . G FE 1002 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.462 ? metalc ? metalc44 R FE FE . G FE 1001 1_555 H OP1 DA 11 H DA 12 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.304 ? metalc ? metalc45 S FE FE . G FE 1002 1_555 H OP2 DA 11 H DA 12 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.491 ? # _chem_comp.formula 'C10 H17 N6 O12 P3' _chem_comp.formula_weight 506.196 _chem_comp.id ANP _chem_comp.mon_nstd_flag . _chem_comp.name 'PHOSPHOAMINOPHOSPHONIC ACID-ADENYLATE ESTER' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag PG O1G ANP doub 13 n n PG O2G ANP sing 14 n n PG O3G ANP sing 15 n n PG N3B ANP sing 16 n n O2G HOG2 ANP sing 17 n n O3G HOG3 ANP sing 18 n n PB O1B ANP doub 19 n n PB O2B ANP sing 20 n n PB N3B ANP sing 21 n n PB O3A ANP sing 22 n n O2B HOB2 ANP sing 23 n n N3B HNB1 ANP sing 24 n n PA O1A ANP doub 25 n n PA O2A ANP sing 26 n n PA O3A ANP sing 27 n n PA O5' ANP sing 28 n n O2A HOA2 ANP sing 29 n n O5' C5' ANP sing 30 n n C5' C4' ANP sing 31 n n C5' "H5'1" ANP sing 32 n n C5' "H5'2" ANP sing 33 n n C4' O4' ANP sing 34 n n C4' C3' ANP sing 35 n n C4' H4' ANP sing 36 n n O4' C1' ANP sing 37 n n C3' O3' ANP sing 38 n n C3' C2' ANP sing 39 n n C3' H3' ANP sing 40 n n O3' HO3' ANP sing 41 n n C2' O2' ANP sing 42 n n C2' C1' ANP sing 43 n n C2' H2' ANP sing 44 n n O2' HO2' ANP sing 45 n n C1' N9 ANP sing 46 n n C1' H1' ANP sing 47 n n N9 C8 ANP sing 48 n y N9 C4 ANP sing 49 n y C8 N7 ANP doub 50 n y C8 H8 ANP sing 51 n n N7 C5 ANP sing 52 n y C5 C6 ANP sing 53 n y C5 C4 ANP doub 54 n y C6 N6 ANP sing 55 n n C6 N1 ANP doub 56 n y N6 HN61 ANP sing 57 n n N6 HN62 ANP sing 58 n n N1 C2 ANP sing 59 n y C2 N3 ANP doub 60 n y C2 H2 ANP sing 61 n n N3 C4 ANP sing 62 n y # _atom_sites.entry_id 4QQZ _atom_sites.fract_transf_matrix[1][1] 0.011505 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.002931 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.004503 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.008262 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code I 3 FE A 1 1001 951 FE FE . J 3 FE A 1 1002 952 FE FE . K 4 ANP A 1 1003 960 ANP ANP . L 3 FE C 1 1001 951 FE FE . M 3 FE C 1 1002 952 FE FE . N 4 ANP C 1 1003 960 ANP ANP . O 3 FE E 1 1001 951 FE FE . P 3 FE E 1 1002 952 FE FE . Q 4 ANP E 1 1003 960 ANP ANP . R 3 FE G 1 1001 951 FE FE . S 3 FE G 1 1002 952 FE FE . T 4 ANP G 1 1003 960 ANP ANP . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 P PG ANP . . . Q 4 -54.475 57.411 -14.311 1 107.17 ? PG ANP 1003 E 1 HETATM 2 O O1G ANP . . . Q 4 -53.008 57.436 -14.253 1 87.46 ? O1G ANP 1003 E 1 HETATM 3 O O2G ANP . . . Q 4 -55.195 58.151 -13.261 1 63.94 ? O2G ANP 1003 E 1 HETATM 4 O O3G ANP . . . Q 4 -55.053 56.06 -14.552 1 72.44 ? O3G ANP 1003 E 1 HETATM 5 P PB ANP . . . Q 4 -55.259 59.875 -15.424 1 83.95 ? PB ANP 1003 E 1 HETATM 6 O O1B ANP . . . Q 4 -54.971 60.723 -16.595 1 68.34 ? O1B ANP 1003 E 1 HETATM 7 O O2B ANP . . . Q 4 -56.548 59.609 -14.862 1 85.93 ? O2B ANP 1003 E 1 HETATM 8 N N3B ANP . . . Q 4 -54.807 58.286 -15.741 1 91.33 ? N3B ANP 1003 E 1 HETATM 9 P PA ANP . . . Q 4 -52.731 60.065 -15.079 1 94.94 ? PA ANP 1003 E 1 HETATM 10 O O1A ANP . . . Q 4 -52.69 59.132 -16.195 1 92.2 ? O1A ANP 1003 E 1 HETATM 11 O O2A ANP . . . Q 4 -51.778 59.667 -14.087 1 65.17 ? O2A ANP 1003 E 1 HETATM 12 O O3A ANP . . . Q 4 -54.135 60.172 -14.405 1 85.39 ? O3A ANP 1003 E 1 HETATM 13 O O5' ANP . . . Q 4 -52.529 61.538 -15.464 1 70.25 ? O5' ANP 1003 E 1 HETATM 14 C C5' ANP . . . Q 4 -52.346 61.733 -16.839 1 78.27 ? C5' ANP 1003 E 1 HETATM 15 C C4' ANP . . . Q 4 -51.061 62.452 -17.155 1 74.59 ? C4' ANP 1003 E 1 HETATM 16 O O4' ANP . . . Q 4 -50.331 62.702 -16.008 1 86.83 ? O4' ANP 1003 E 1 HETATM 17 C C3' ANP . . . Q 4 -50.137 61.568 -17.924 1 69.9 ? C3' ANP 1003 E 1 HETATM 18 O O3' ANP . . . Q 4 -49.828 62.211 -19.136 1 68.47 ? O3' ANP 1003 E 1 HETATM 19 C C2' ANP . . . Q 4 -48.824 61.515 -17.217 1 71.42 ? C2' ANP 1003 E 1 HETATM 20 O O2' ANP . . . Q 4 -47.819 61.649 -18.222 1 67.14 ? O2' ANP 1003 E 1 HETATM 21 C C1' ANP . . . Q 4 -48.995 62.753 -16.426 1 84.85 ? C1' ANP 1003 E 1 HETATM 22 N N9 ANP . . . Q 4 -48.071 63.049 -15.322 1 82.45 ? N9 ANP 1003 E 1 HETATM 23 C C8 ANP . . . Q 4 -47.513 64.243 -15.198 1 81.75 ? C8 ANP 1003 E 1 HETATM 24 N N7 ANP . . . Q 4 -46.723 64.372 -14.138 1 72.98 ? N7 ANP 1003 E 1 HETATM 25 C C5 ANP . . . Q 4 -46.793 63.207 -13.538 1 72.44 ? C5 ANP 1003 E 1 HETATM 26 C C6 ANP . . . Q 4 -46.181 62.673 -12.342 1 66.35 ? C6 ANP 1003 E 1 HETATM 27 N N6 ANP . . . Q 4 -45.35 63.384 -11.589 1 65.85 ? N6 ANP 1003 E 1 HETATM 28 N N1 ANP . . . Q 4 -46.462 61.434 -12.037 1 67.04 ? N1 ANP 1003 E 1 HETATM 29 C C2 ANP . . . Q 4 -47.288 60.72 -12.801 1 67.08 ? C2 ANP 1003 E 1 HETATM 30 N N3 ANP . . . Q 4 -47.888 61.142 -13.909 1 63.14 ? N3 ANP 1003 E 1 HETATM 31 C C4 ANP . . . Q 4 -47.672 62.355 -14.319 1 71.26 ? C4 ANP 1003 E 1 # _model_server_stats.io_time_ms 66 _model_server_stats.parse_time_ms 12 _model_server_stats.create_model_time_ms 38 _model_server_stats.query_time_ms 328 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 31 #