data_4QR7 # _model_server_result.job_id MFM24rE2j2vqMSzBTUAPsw _model_server_result.datetime_utc '2024-11-18 09:44:30' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 4qr7 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"C","auth_seq_id":502}' # _entry.id 4QR7 # _exptl.entry_id 4QR7 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 385.478 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description '(2S,3R,4S)-4-{[(3S,5S)-5-(dimethylcarbamoyl)pyrrolidin-3-yl]sulfanyl}-2-[(2S,3R)-3-hydroxy-1-oxobutan-2-yl]-3-methyl-3,4-dihydro-2H-pyrrole-5-carboxylic acid' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 4QR7 _cell.length_a 57.33 _cell.length_b 66.459 _cell.length_c 206.865 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 4QR7 _symmetry.cell_setting ? _symmetry.Int_Tables_number 20 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'C 2 2 21' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id ? monomeric 1 author_defined_assembly 1 PISA dimeric 2 software_defined_assembly 2 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,B,C,D 1 1 A,B,C,D 2 1,2 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 4_545 x,-y-1,-z 1 0 0 0 -1 0 0 0 -1 0 -66.459 0 # _struct_asym.details ? _struct_asym.entity_id 3 _struct_asym.id C _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _struct_conn.conn_type_id covale _struct_conn.details ? _struct_conn.id covale1 _struct_conn.ptnr1_label_asym_id A _struct_conn.ptnr1_label_atom_id SG _struct_conn.ptnr1_label_comp_id CYS _struct_conn.ptnr1_label_seq_id 298 _struct_conn.ptnr1_auth_asym_id A _struct_conn.ptnr1_auth_comp_id CYS _struct_conn.ptnr1_auth_seq_id 354 _struct_conn.ptnr1_symmetry 1_555 _struct_conn.ptnr2_label_asym_id C _struct_conn.ptnr2_label_atom_id CAA _struct_conn.ptnr2_label_comp_id DWZ _struct_conn.ptnr2_label_seq_id . _struct_conn.ptnr2_auth_asym_id A _struct_conn.ptnr2_auth_comp_id DWZ _struct_conn.ptnr2_auth_seq_id 502 _struct_conn.ptnr2_symmetry 1_555 _struct_conn.pdbx_ptnr1_PDB_ins_code ? _struct_conn.pdbx_ptnr1_label_alt_id ? _struct_conn.pdbx_ptnr1_standard_comp_id ? _struct_conn.pdbx_ptnr2_PDB_ins_code ? _struct_conn.pdbx_ptnr2_label_alt_id ? _struct_conn.pdbx_ptnr3_PDB_ins_code ? _struct_conn.pdbx_ptnr3_label_alt_id ? _struct_conn.pdbx_ptnr3_label_asym_id ? _struct_conn.pdbx_ptnr3_label_atom_id ? _struct_conn.pdbx_ptnr3_label_comp_id ? _struct_conn.pdbx_ptnr3_label_seq_id ? _struct_conn.pdbx_PDB_id ? _struct_conn.pdbx_dist_value 1.485 _struct_conn.pdbx_value_order ? # _chem_comp.formula 'C17 H27 N3 O5 S' _chem_comp.formula_weight 385.478 _chem_comp.id DWZ _chem_comp.mon_nstd_flag . _chem_comp.name '(2S,3R,4S)-4-{[(3S,5S)-5-(dimethylcarbamoyl)pyrrolidin-3-yl]sulfanyl}-2-[(2S,3R)-3-hydroxy-1-oxobutan-2-yl]-3-methyl-3,4-dihydro-2H-pyrrole-5-carboxylic acid' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms 'Meropenem, bound form' # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag CBE HBE DWZ sing 83 n n CBE HBEA DWZ sing 84 n n CBE HBEB DWZ sing 85 n n NBC CBE DWZ sing 86 n n CBD NBC DWZ sing 87 n n CBD HBD DWZ sing 88 n n CBD HBDA DWZ sing 89 n n CBD HBDB DWZ sing 90 n n C NBC DWZ sing 91 n n C CA DWZ sing 92 n n O C DWZ doub 93 n n CA N DWZ sing 94 n n CA HA DWZ sing 95 n n CB CA DWZ sing 96 n n CB CG DWZ sing 97 n n CB HB DWZ sing 98 n n CB HBA DWZ sing 99 n n N HN DWZ sing 100 n n CD N DWZ sing 101 n n CD HD DWZ sing 102 n n CD HDA DWZ sing 103 n n CG CD DWZ sing 104 n n CG HG DWZ sing 105 n n SAK CG DWZ sing 106 n n SAK CAI DWZ sing 107 n n CAI HAI DWZ sing 108 n n CAH CAI DWZ sing 109 n n CAH CAS DWZ sing 110 n n CAH HAH DWZ sing 111 n n CAS HAS DWZ sing 112 n n CAS HASA DWZ sing 113 n n CAS HASB DWZ sing 114 n n CAL CAI DWZ sing 115 n n CAL CAM DWZ sing 116 n n CAM OAU DWZ sing 117 n n OAT CAM DWZ doub 118 n n OAU HOAU DWZ sing 119 n n NAJ CAL DWZ doub 120 n n NAJ CAD DWZ sing 121 n n CAD CAH DWZ sing 122 n n CAD CAB DWZ sing 123 n n CAD HAD DWZ sing 124 n n CAB HAB DWZ sing 125 n n CAE CAB DWZ sing 126 n n CAE CAF DWZ sing 127 n n CAE HAE DWZ sing 128 n n CAF HAF DWZ sing 129 n n CAF HAFA DWZ sing 130 n n CAF HAFB DWZ sing 131 n n OAG CAE DWZ sing 132 n n OAG HOAG DWZ sing 133 n n CAA CAB DWZ sing 134 n n CAA OAC DWZ doub 135 n n CAA HAA DWZ sing 136 n n # _atom_sites.entry_id 4QR7 _atom_sites.fract_transf_matrix[1][1] 0.017443 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.015047 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.004834 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 MLD A 1 501 501 MLD MLD . C 3 DWZ A 1 502 502 DWZ DWZ . D 4 HOH A 1 601 1 HOH HOH . D 4 HOH A 2 602 2 HOH HOH . D 4 HOH A 3 603 3 HOH HOH . D 4 HOH A 4 604 4 HOH HOH . D 4 HOH A 5 605 5 HOH HOH . D 4 HOH A 6 606 6 HOH HOH . D 4 HOH A 7 607 7 HOH HOH . D 4 HOH A 8 608 8 HOH HOH . D 4 HOH A 9 609 9 HOH HOH . D 4 HOH A 10 610 10 HOH HOH . D 4 HOH A 11 611 11 HOH HOH . D 4 HOH A 12 612 12 HOH HOH . D 4 HOH A 13 613 13 HOH HOH . D 4 HOH A 14 614 14 HOH HOH . D 4 HOH A 15 615 15 HOH HOH . D 4 HOH A 16 616 16 HOH HOH . D 4 HOH A 17 617 17 HOH HOH . D 4 HOH A 18 618 18 HOH HOH . D 4 HOH A 19 619 19 HOH HOH . D 4 HOH A 20 620 20 HOH HOH . D 4 HOH A 21 621 21 HOH HOH . D 4 HOH A 22 622 22 HOH HOH . D 4 HOH A 23 623 23 HOH HOH . D 4 HOH A 24 624 24 HOH HOH . D 4 HOH A 25 625 25 HOH HOH . D 4 HOH A 26 626 26 HOH HOH . D 4 HOH A 27 627 27 HOH HOH . D 4 HOH A 28 628 28 HOH HOH . D 4 HOH A 29 629 29 HOH HOH . D 4 HOH A 30 630 30 HOH HOH . D 4 HOH A 31 631 31 HOH HOH . D 4 HOH A 32 632 32 HOH HOH . D 4 HOH A 33 633 33 HOH HOH . D 4 HOH A 34 634 34 HOH HOH . D 4 HOH A 35 635 35 HOH HOH . D 4 HOH A 36 636 36 HOH HOH . D 4 HOH A 37 637 37 HOH HOH . D 4 HOH A 38 638 38 HOH HOH . D 4 HOH A 39 639 39 HOH HOH . D 4 HOH A 40 640 40 HOH HOH . D 4 HOH A 41 641 41 HOH HOH . D 4 HOH A 42 642 42 HOH HOH . D 4 HOH A 43 643 43 HOH HOH . D 4 HOH A 44 644 44 HOH HOH . D 4 HOH A 45 645 45 HOH HOH . D 4 HOH A 46 646 46 HOH HOH . D 4 HOH A 47 647 47 HOH HOH . D 4 HOH A 48 648 48 HOH HOH . D 4 HOH A 49 649 49 HOH HOH . D 4 HOH A 50 650 50 HOH HOH . D 4 HOH A 51 651 51 HOH HOH . D 4 HOH A 52 652 52 HOH HOH . D 4 HOH A 53 653 53 HOH HOH . D 4 HOH A 54 654 54 HOH HOH . D 4 HOH A 55 655 55 HOH HOH . D 4 HOH A 56 656 56 HOH HOH . D 4 HOH A 57 657 57 HOH HOH . D 4 HOH A 58 658 58 HOH HOH . D 4 HOH A 59 659 59 HOH HOH . D 4 HOH A 60 660 60 HOH HOH . D 4 HOH A 61 661 61 HOH HOH . D 4 HOH A 62 662 62 HOH HOH . D 4 HOH A 63 663 63 HOH HOH . D 4 HOH A 64 664 64 HOH HOH . D 4 HOH A 65 665 65 HOH HOH . D 4 HOH A 66 666 66 HOH HOH . D 4 HOH A 67 667 67 HOH HOH . D 4 HOH A 68 668 68 HOH HOH . D 4 HOH A 69 669 69 HOH HOH . D 4 HOH A 70 670 70 HOH HOH . D 4 HOH A 71 671 71 HOH HOH . D 4 HOH A 72 672 72 HOH HOH . D 4 HOH A 73 673 73 HOH HOH . D 4 HOH A 74 674 74 HOH HOH . D 4 HOH A 75 675 75 HOH HOH . D 4 HOH A 76 676 76 HOH HOH . D 4 HOH A 77 677 77 HOH HOH . D 4 HOH A 78 678 78 HOH HOH . D 4 HOH A 79 679 79 HOH HOH . D 4 HOH A 80 680 80 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C CBE DWZ . . . C 3 23.149 -0.894 37.333 1 90.19 ? CBE DWZ 502 A 1 HETATM 2 N NBC DWZ . . . C 3 23.049 -2.199 36.707 1 94.49 ? NBC DWZ 502 A 1 HETATM 3 C CBD DWZ . . . C 3 22.248 -2.245 35.496 1 93.42 ? CBD DWZ 502 A 1 HETATM 4 C C DWZ . . . C 3 23.653 -3.248 37.251 1 90.22 ? C DWZ 502 A 1 HETATM 5 O O DWZ . . . C 3 24.453 -3.959 36.665 1 92.44 ? O DWZ 502 A 1 HETATM 6 C CA DWZ . . . C 3 23.246 -3.409 38.682 1 91 ? CA DWZ 502 A 1 HETATM 7 C CB DWZ . . . C 3 23.669 -4.684 39.374 1 91.17 ? CB DWZ 502 A 1 HETATM 8 N N DWZ . . . C 3 21.809 -3.369 38.814 1 91.09 ? N DWZ 502 A 1 HETATM 9 C CD DWZ . . . C 3 21.329 -4.272 39.831 1 94.69 ? CD DWZ 502 A 1 HETATM 10 C CG DWZ . . . C 3 22.528 -5.083 40.304 1 90.88 ? CG DWZ 502 A 1 HETATM 11 S SAK DWZ . . . C 3 22.162 -6.802 40.155 1 95.36 ? SAK DWZ 502 A 1 HETATM 12 C CAI DWZ . . . C 3 22.325 -7.82 41.599 1 95.43 ? CAI DWZ 502 A 1 HETATM 13 C CAH DWZ . . . C 3 21.964 -9.277 41.304 1 87.36 ? CAH DWZ 502 A 1 HETATM 14 C CAS DWZ . . . C 3 20.652 -9.691 41.939 1 83.83 ? CAS DWZ 502 A 1 HETATM 15 C CAL DWZ . . . C 3 23.699 -7.954 42.167 1 97.21 ? CAL DWZ 502 A 1 HETATM 16 C CAM DWZ . . . C 3 24.478 -6.816 42.664 1 93.32 ? CAM DWZ 502 A 1 HETATM 17 O OAT DWZ . . . C 3 25.017 -6.814 43.797 1 80.33 ? OAT DWZ 502 A 1 HETATM 18 O OAU DWZ . . . C 3 24.554 -5.83 41.929 1 95.62 ? OAU DWZ 502 A 1 HETATM 19 N NAJ DWZ . . . C 3 24.081 -9.149 42.261 1 89.87 ? NAJ DWZ 502 A 1 HETATM 20 C CAD DWZ . . . C 3 23.199 -10.147 41.642 1 83.96 ? CAD DWZ 502 A 1 HETATM 21 C CAB DWZ . . . C 3 23.228 -11.547 42.392 1 76.69 ? CAB DWZ 502 A 1 HETATM 22 C CAE DWZ . . . C 3 24.603 -11.702 43.063 1 77.07 ? CAE DWZ 502 A 1 HETATM 23 C CAF DWZ . . . C 3 25.752 -11.305 42.165 1 75.55 ? CAF DWZ 502 A 1 HETATM 24 O OAG DWZ . . . C 3 24.744 -10.799 44.123 1 80.17 ? OAG DWZ 502 A 1 HETATM 25 C CAA DWZ . . . C 3 22.081 -12.133 43.283 1 70.18 ? CAA DWZ 502 A 1 HETATM 26 O OAC DWZ . . . C 3 21.967 -11.39 44.498 1 66.41 ? OAC DWZ 502 A 1 # _model_server_stats.io_time_ms 9 _model_server_stats.parse_time_ms 13 _model_server_stats.create_model_time_ms 8 _model_server_stats.query_time_ms 334 _model_server_stats.encode_time_ms 5 _model_server_stats.element_count 26 #