data_4QRP # _model_server_result.job_id iEpOSV2peU0GMpnc3c5PLA _model_server_result.datetime_utc '2024-11-28 07:25:30' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 4qrp # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"P","auth_seq_id":303}' # _entry.id 4QRP # _exptl.entry_id 4QRP _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 22.99 _entity.id 7 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'SODIUM ION' _entity.pdbx_number_of_molecules 3 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 101.97 _cell.angle_gamma 90 _cell.entry_id 4QRP _cell.length_a 74.16 _cell.length_b 252.19 _cell.length_c 79.45 _cell.Z_PDB 6 _cell.pdbx_unique_axis ? # _symmetry.entry_id 4QRP _symmetry.cell_setting ? _symmetry.Int_Tables_number 4 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1 21 1' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id ? pentameric 5 author_defined_assembly 1 ? pentameric 5 author_defined_assembly 2 ? dimeric 2 author_defined_assembly 3 PISA dodecameric 12 software_defined_assembly 4 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,B,C,D,E,M,N,O,P,BA,CA 1 1 F,G,H,I,J,Q,R,S,T,U,DA,EA,FA,GA,HA 2 1 K,L,V,W,X,Y,Z,AA,IA,JA 3 1 A,B,C,I,J,S,T,U,GA,HA 4 2 D,E,F,G,H,K,L,M,N,O,P,Q,R,V,W,X,Y,Z,AA,BA,CA,DA,EA,FA,IA,JA 4 1 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 1_454 x-1,y,z-1 1 0 0 0 1 0 0 0 1 -57.682109 0 -77.722465 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 7 P N N ? 7 R N N ? 7 Z N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 E SG CYS 23 E CYS 23 1_555 E SG CYS 92 E CYS 104 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.893 ? disulf ? disulf2 E SG CYS 146 E CYS 158 1_555 E SG CYS 211 E CYS 223 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.808 ? disulf ? disulf3 G SG CYS 26 G CYS 25 1_555 G SG CYS 81 G CYS 80 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.608 ? disulf ? disulf4 I SG CYS 23 I CYS 23 1_555 I SG CYS 92 I CYS 104 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.994 ? disulf ? disulf5 K SG CYS 24 K CYS 22 1_555 K SG CYS 91 K CYS 103 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.807 ? # _chem_comp.formula 'Na 1' _chem_comp.formula_weight 22.99 _chem_comp.id NA _chem_comp.mon_nstd_flag . _chem_comp.name 'SODIUM ION' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # _atom_sites.entry_id 4QRP _atom_sites.fract_transf_matrix[1][1] 0.013484 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.002859 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.003965 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.012866 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code M 6 IOD D 1 301 26 IOD IOD . N 6 IOD E 1 301 3 IOD IOD . O 6 IOD E 1 302 5 IOD IOD . P 7 NA E 1 303 14 NA NA . Q 6 IOD G 1 101 4 IOD IOD . R 7 NA G 1 102 13 NA NA . S 6 IOD I 1 301 8 IOD IOD . T 6 IOD I 1 302 27 IOD IOD . U 6 IOD J 1 301 7 IOD IOD . V 6 IOD K 1 301 9 IOD IOD . W 6 IOD K 1 302 24 IOD IOD . X 6 IOD L 1 301 11 IOD IOD . Y 6 IOD L 1 302 12 IOD IOD . Z 7 NA L 1 303 21 NA NA . AA 6 IOD L 1 304 25 IOD IOD . BA 8 HOH D 1 401 13 HOH HOH . BA 8 HOH D 2 402 46 HOH HOH . BA 8 HOH D 3 403 55 HOH HOH . BA 8 HOH D 4 404 56 HOH HOH . BA 8 HOH D 5 405 61 HOH HOH . CA 8 HOH E 1 401 6 HOH HOH . CA 8 HOH E 2 402 8 HOH HOH . CA 8 HOH E 3 403 11 HOH HOH . CA 8 HOH E 4 404 22 HOH HOH . CA 8 HOH E 5 405 24 HOH HOH . CA 8 HOH E 6 406 26 HOH HOH . CA 8 HOH E 7 407 31 HOH HOH . CA 8 HOH E 8 408 35 HOH HOH . CA 8 HOH E 9 409 58 HOH HOH . DA 8 HOH F 1 301 5 HOH HOH . DA 8 HOH F 2 302 7 HOH HOH . DA 8 HOH F 3 303 16 HOH HOH . DA 8 HOH F 4 304 21 HOH HOH . DA 8 HOH F 5 305 27 HOH HOH . DA 8 HOH F 6 306 32 HOH HOH . DA 8 HOH F 7 307 36 HOH HOH . DA 8 HOH F 8 308 49 HOH HOH . DA 8 HOH F 9 309 59 HOH HOH . DA 8 HOH F 10 310 60 HOH HOH . EA 8 HOH G 1 201 1 HOH HOH . EA 8 HOH G 2 202 3 HOH HOH . EA 8 HOH G 3 203 19 HOH HOH . EA 8 HOH G 4 204 23 HOH HOH . EA 8 HOH G 5 205 43 HOH HOH . EA 8 HOH G 6 206 51 HOH HOH . FA 8 HOH H 1 101 42 HOH HOH . GA 8 HOH I 1 401 15 HOH HOH . GA 8 HOH I 2 402 50 HOH HOH . GA 8 HOH I 3 403 57 HOH HOH . HA 8 HOH J 1 401 18 HOH HOH . HA 8 HOH J 2 402 45 HOH HOH . HA 8 HOH J 3 403 48 HOH HOH . IA 8 HOH K 1 401 2 HOH HOH . IA 8 HOH K 2 402 4 HOH HOH . IA 8 HOH K 3 403 12 HOH HOH . IA 8 HOH K 4 404 14 HOH HOH . IA 8 HOH K 5 405 20 HOH HOH . IA 8 HOH K 6 406 28 HOH HOH . IA 8 HOH K 7 407 29 HOH HOH . IA 8 HOH K 8 408 30 HOH HOH . IA 8 HOH K 9 409 39 HOH HOH . IA 8 HOH K 10 410 40 HOH HOH . IA 8 HOH K 11 411 41 HOH HOH . IA 8 HOH K 12 412 47 HOH HOH . IA 8 HOH K 13 413 53 HOH HOH . IA 8 HOH K 14 414 54 HOH HOH . JA 8 HOH L 1 401 10 HOH HOH . JA 8 HOH L 2 402 17 HOH HOH . JA 8 HOH L 3 403 25 HOH HOH . JA 8 HOH L 4 404 34 HOH HOH . JA 8 HOH L 5 405 44 HOH HOH . # _atom_site.group_PDB HETATM _atom_site.id 1 _atom_site.type_symbol NA _atom_site.label_atom_id NA _atom_site.label_comp_id NA _atom_site.label_seq_id . _atom_site.label_alt_id . _atom_site.pdbx_PDB_ins_code . _atom_site.label_asym_id P _atom_site.label_entity_id 7 _atom_site.Cartn_x 1.09 _atom_site.Cartn_y -52.967 _atom_site.Cartn_z -25.078 _atom_site.occupancy 1 _atom_site.B_iso_or_equiv 39.78 _atom_site.pdbx_formal_charge ? _atom_site.auth_atom_id NA _atom_site.auth_comp_id NA _atom_site.auth_seq_id 303 _atom_site.auth_asym_id E _atom_site.pdbx_PDB_model_num 1 # _model_server_stats.io_time_ms 14 _model_server_stats.parse_time_ms 10 _model_server_stats.create_model_time_ms 21 _model_server_stats.query_time_ms 275 _model_server_stats.encode_time_ms 5 _model_server_stats.element_count 1 #