data_4QSR # _model_server_result.job_id ZyvIa5BNYfc2KokZqyVrBg _model_server_result.datetime_utc '2024-10-19 05:24:35' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 4qsr # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"E","auth_seq_id":1204}' # _entry.id 4QSR # _exptl.entry_id 4QSR _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 118.174 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description (4S)-2-METHYL-2,4-PENTANEDIOL _entity.pdbx_number_of_molecules 3 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 4QSR _cell.length_a 79.584 _cell.length_b 79.584 _cell.length_c 139.363 _cell.Z_PDB 12 _cell.pdbx_unique_axis ? # _symmetry.entry_id 4QSR _symmetry.cell_setting ? _symmetry.Int_Tables_number 179 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 65 2 2' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id ? monomeric 1 author_defined_assembly 1 PISA dimeric 2 software_defined_assembly 2 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,B,C,D,E,F,G,H 1 1 A,B,C,D,E,F,G,H 2 1,2 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 12_554 x,x-y,-z-1/6 0.5 0.866025 0 0.866025 -0.5 0 0 0 -1 0 0 -23.227167 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 3 D N N ? 3 E N N ? 3 F N N # _chem_comp.formula 'C6 H14 O2' _chem_comp.formula_weight 118.174 _chem_comp.id MPD _chem_comp.mon_nstd_flag . _chem_comp.name (4S)-2-METHYL-2,4-PENTANEDIOL _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 C2 MPD sing 250 n n C1 H11 MPD sing 251 n n C1 H12 MPD sing 252 n n C1 H13 MPD sing 253 n n C2 O2 MPD sing 254 n n C2 CM MPD sing 255 n n C2 C3 MPD sing 256 n n O2 HO2 MPD sing 257 n n CM HM1 MPD sing 258 n n CM HM2 MPD sing 259 n n CM HM3 MPD sing 260 n n C3 C4 MPD sing 261 n n C3 H31 MPD sing 262 n n C3 H32 MPD sing 263 n n C4 O4 MPD sing 264 n n C4 C5 MPD sing 265 n n C4 H4 MPD sing 266 n n O4 HO4 MPD sing 267 n n C5 H51 MPD sing 268 n n C5 H52 MPD sing 269 n n C5 H53 MPD sing 270 n n # _atom_sites.entry_id 4QSR _atom_sites.fract_transf_matrix[1][1] 0.012565 _atom_sites.fract_transf_matrix[1][2] 0.007255 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.014509 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.007176 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 SO4 A 1 1201 1 SO4 SO4 . C 2 SO4 A 1 1202 2 SO4 SO4 . D 3 MPD A 1 1203 5 MPD MPD . E 3 MPD A 1 1204 6 MPD MPD . F 3 MPD A 1 1205 7 MPD MPD . G 4 GOL A 1 1206 8 GOL GOL . H 5 HOH A 1 1301 1 HOH HOH . H 5 HOH A 2 1302 2 HOH HOH . H 5 HOH A 3 1303 3 HOH HOH . H 5 HOH A 4 1304 4 HOH HOH . H 5 HOH A 5 1305 5 HOH HOH . H 5 HOH A 6 1306 6 HOH HOH . H 5 HOH A 7 1307 7 HOH HOH . H 5 HOH A 8 1308 8 HOH HOH . H 5 HOH A 9 1309 9 HOH HOH . H 5 HOH A 10 1310 10 HOH HOH . H 5 HOH A 11 1311 11 HOH HOH . H 5 HOH A 12 1312 12 HOH HOH . H 5 HOH A 13 1313 13 HOH HOH . H 5 HOH A 14 1314 14 HOH HOH . H 5 HOH A 15 1315 15 HOH HOH . H 5 HOH A 16 1316 16 HOH HOH . H 5 HOH A 17 1317 17 HOH HOH . H 5 HOH A 18 1318 18 HOH HOH . H 5 HOH A 19 1319 19 HOH HOH . H 5 HOH A 20 1320 20 HOH HOH . H 5 HOH A 21 1321 21 HOH HOH . H 5 HOH A 22 1322 22 HOH HOH . H 5 HOH A 23 1323 23 HOH HOH . H 5 HOH A 24 1324 24 HOH HOH . H 5 HOH A 25 1325 25 HOH HOH . H 5 HOH A 26 1326 26 HOH HOH . H 5 HOH A 27 1327 27 HOH HOH . H 5 HOH A 28 1328 28 HOH HOH . H 5 HOH A 29 1329 30 HOH HOH . H 5 HOH A 30 1330 31 HOH HOH . H 5 HOH A 31 1331 32 HOH HOH . H 5 HOH A 32 1332 33 HOH HOH . H 5 HOH A 33 1333 34 HOH HOH . H 5 HOH A 34 1334 35 HOH HOH . H 5 HOH A 35 1335 36 HOH HOH . H 5 HOH A 36 1336 37 HOH HOH . H 5 HOH A 37 1337 38 HOH HOH . H 5 HOH A 38 1338 39 HOH HOH . H 5 HOH A 39 1339 40 HOH HOH . H 5 HOH A 40 1340 41 HOH HOH . H 5 HOH A 41 1341 42 HOH HOH . H 5 HOH A 42 1342 43 HOH HOH . H 5 HOH A 43 1343 44 HOH HOH . H 5 HOH A 44 1344 45 HOH HOH . H 5 HOH A 45 1345 46 HOH HOH . H 5 HOH A 46 1346 47 HOH HOH . H 5 HOH A 47 1347 48 HOH HOH . H 5 HOH A 48 1348 49 HOH HOH . H 5 HOH A 49 1349 50 HOH HOH . H 5 HOH A 50 1350 51 HOH HOH . H 5 HOH A 51 1351 52 HOH HOH . H 5 HOH A 52 1352 53 HOH HOH . H 5 HOH A 53 1353 54 HOH HOH . H 5 HOH A 54 1354 55 HOH HOH . H 5 HOH A 55 1355 56 HOH HOH . H 5 HOH A 56 1356 57 HOH HOH . H 5 HOH A 57 1357 58 HOH HOH . H 5 HOH A 58 1358 59 HOH HOH . H 5 HOH A 59 1359 60 HOH HOH . H 5 HOH A 60 1360 61 HOH HOH . H 5 HOH A 61 1361 63 HOH HOH . H 5 HOH A 62 1362 64 HOH HOH . H 5 HOH A 63 1363 65 HOH HOH . H 5 HOH A 64 1364 66 HOH HOH . H 5 HOH A 65 1365 67 HOH HOH . H 5 HOH A 66 1366 68 HOH HOH . H 5 HOH A 67 1367 69 HOH HOH . H 5 HOH A 68 1368 70 HOH HOH . H 5 HOH A 69 1369 71 HOH HOH . H 5 HOH A 70 1370 72 HOH HOH . H 5 HOH A 71 1371 73 HOH HOH . H 5 HOH A 72 1372 74 HOH HOH . H 5 HOH A 73 1373 75 HOH HOH . H 5 HOH A 74 1374 76 HOH HOH . H 5 HOH A 75 1375 77 HOH HOH . H 5 HOH A 76 1376 78 HOH HOH . H 5 HOH A 77 1377 79 HOH HOH . H 5 HOH A 78 1378 80 HOH HOH . H 5 HOH A 79 1379 81 HOH HOH . H 5 HOH A 80 1380 82 HOH HOH . H 5 HOH A 81 1381 83 HOH HOH . H 5 HOH A 82 1382 84 HOH HOH . H 5 HOH A 83 1383 85 HOH HOH . H 5 HOH A 84 1384 86 HOH HOH . H 5 HOH A 85 1385 87 HOH HOH . H 5 HOH A 86 1386 88 HOH HOH . H 5 HOH A 87 1387 89 HOH HOH . H 5 HOH A 88 1388 90 HOH HOH . H 5 HOH A 89 1389 91 HOH HOH . H 5 HOH A 90 1390 92 HOH HOH . H 5 HOH A 91 1391 93 HOH HOH . H 5 HOH A 92 1392 95 HOH HOH . H 5 HOH A 93 1393 96 HOH HOH . H 5 HOH A 94 1394 97 HOH HOH . H 5 HOH A 95 1395 98 HOH HOH . H 5 HOH A 96 1396 99 HOH HOH . H 5 HOH A 97 1397 100 HOH HOH . H 5 HOH A 98 1398 101 HOH HOH . H 5 HOH A 99 1399 102 HOH HOH . H 5 HOH A 100 1400 103 HOH HOH . H 5 HOH A 101 1401 104 HOH HOH . H 5 HOH A 102 1402 105 HOH HOH . H 5 HOH A 103 1403 107 HOH HOH . H 5 HOH A 104 1404 108 HOH HOH . H 5 HOH A 105 1405 109 HOH HOH . H 5 HOH A 106 1406 110 HOH HOH . H 5 HOH A 107 1407 111 HOH HOH . H 5 HOH A 108 1408 112 HOH HOH . H 5 HOH A 109 1409 113 HOH HOH . H 5 HOH A 110 1410 114 HOH HOH . H 5 HOH A 111 1411 115 HOH HOH . H 5 HOH A 112 1412 116 HOH HOH . H 5 HOH A 113 1413 117 HOH HOH . H 5 HOH A 114 1414 118 HOH HOH . H 5 HOH A 115 1415 119 HOH HOH . H 5 HOH A 116 1416 120 HOH HOH . H 5 HOH A 117 1417 121 HOH HOH . H 5 HOH A 118 1418 122 HOH HOH . H 5 HOH A 119 1419 123 HOH HOH . H 5 HOH A 120 1420 124 HOH HOH . H 5 HOH A 121 1421 125 HOH HOH . H 5 HOH A 122 1422 126 HOH HOH . H 5 HOH A 123 1423 127 HOH HOH . H 5 HOH A 124 1424 128 HOH HOH . H 5 HOH A 125 1425 129 HOH HOH . H 5 HOH A 126 1426 130 HOH HOH . H 5 HOH A 127 1427 131 HOH HOH . H 5 HOH A 128 1428 132 HOH HOH . H 5 HOH A 129 1429 133 HOH HOH . H 5 HOH A 130 1430 137 HOH HOH . H 5 HOH A 131 1431 138 HOH HOH . H 5 HOH A 132 1432 139 HOH HOH . H 5 HOH A 133 1433 140 HOH HOH . H 5 HOH A 134 1434 141 HOH HOH . H 5 HOH A 135 1435 142 HOH HOH . H 5 HOH A 136 1436 143 HOH HOH . H 5 HOH A 137 1437 144 HOH HOH . H 5 HOH A 138 1438 145 HOH HOH . H 5 HOH A 139 1439 146 HOH HOH . H 5 HOH A 140 1440 147 HOH HOH . H 5 HOH A 141 1441 148 HOH HOH . H 5 HOH A 142 1442 149 HOH HOH . H 5 HOH A 143 1443 150 HOH HOH . H 5 HOH A 144 1444 151 HOH HOH . H 5 HOH A 145 1445 152 HOH HOH . H 5 HOH A 146 1446 153 HOH HOH . H 5 HOH A 147 1447 154 HOH HOH . H 5 HOH A 148 1448 155 HOH HOH . H 5 HOH A 149 1449 156 HOH HOH . H 5 HOH A 150 1450 157 HOH HOH . H 5 HOH A 151 1451 158 HOH HOH . H 5 HOH A 152 1452 159 HOH HOH . H 5 HOH A 153 1453 160 HOH HOH . H 5 HOH A 154 1454 161 HOH HOH . H 5 HOH A 155 1455 162 HOH HOH . H 5 HOH A 156 1456 163 HOH HOH . H 5 HOH A 157 1457 164 HOH HOH . H 5 HOH A 158 1458 165 HOH HOH . H 5 HOH A 159 1459 166 HOH HOH . H 5 HOH A 160 1460 167 HOH HOH . H 5 HOH A 161 1461 168 HOH HOH . H 5 HOH A 162 1462 169 HOH HOH . H 5 HOH A 163 1463 170 HOH HOH . H 5 HOH A 164 1464 171 HOH HOH . H 5 HOH A 165 1465 172 HOH HOH . H 5 HOH A 166 1466 173 HOH HOH . H 5 HOH A 167 1467 174 HOH HOH . H 5 HOH A 168 1468 175 HOH HOH . H 5 HOH A 169 1469 176 HOH HOH . H 5 HOH A 170 1470 177 HOH HOH . H 5 HOH A 171 1471 178 HOH HOH . H 5 HOH A 172 1472 179 HOH HOH . H 5 HOH A 173 1473 180 HOH HOH . H 5 HOH A 174 1474 181 HOH HOH . H 5 HOH A 175 1475 182 HOH HOH . H 5 HOH A 176 1476 183 HOH HOH . H 5 HOH A 177 1477 184 HOH HOH . H 5 HOH A 178 1478 185 HOH HOH . H 5 HOH A 179 1479 186 HOH HOH . H 5 HOH A 180 1480 187 HOH HOH . H 5 HOH A 181 1481 188 HOH HOH . H 5 HOH A 182 1482 189 HOH HOH . H 5 HOH A 183 1483 190 HOH HOH . H 5 HOH A 184 1484 191 HOH HOH . H 5 HOH A 185 1485 192 HOH HOH . H 5 HOH A 186 1486 193 HOH HOH . H 5 HOH A 187 1487 194 HOH HOH . H 5 HOH A 188 1488 195 HOH HOH . H 5 HOH A 189 1489 196 HOH HOH . H 5 HOH A 190 1490 197 HOH HOH . H 5 HOH A 191 1491 198 HOH HOH . H 5 HOH A 192 1492 199 HOH HOH . H 5 HOH A 193 1493 200 HOH HOH . H 5 HOH A 194 1494 201 HOH HOH . H 5 HOH A 195 1495 203 HOH HOH . H 5 HOH A 196 1496 204 HOH HOH . H 5 HOH A 197 1497 206 HOH HOH . H 5 HOH A 198 1498 207 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 MPD . . . E 3 42.078 32.668 -11.575 1 13.67 ? C1 MPD 1204 A 1 HETATM 2 C C2 MPD . . . E 3 41.636 33.235 -10.206 1 19.6 ? C2 MPD 1204 A 1 HETATM 3 O O2 MPD . . . E 3 42.384 34.449 -9.991 1 15.15 ? O2 MPD 1204 A 1 HETATM 4 C CM MPD . . . E 3 40.132 33.533 -10.127 1 15.39 ? CM MPD 1204 A 1 HETATM 5 C C3 MPD . . . E 3 42.123 32.311 -9.072 1 16.8 ? C3 MPD 1204 A 1 HETATM 6 C C4 MPD . . . E 3 41.524 30.919 -8.885 1 15.05 ? C4 MPD 1204 A 1 HETATM 7 O O4 MPD . . . E 3 42.041 29.976 -9.869 1 17.95 ? O4 MPD 1204 A 1 HETATM 8 C C5 MPD . . . E 3 41.947 30.399 -7.5 1 16.17 ? C5 MPD 1204 A 1 # _model_server_stats.io_time_ms 57 _model_server_stats.parse_time_ms 7 _model_server_stats.create_model_time_ms 2 _model_server_stats.query_time_ms 280 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 8 #