data_4QSW # _model_server_result.job_id J9Ti21Pk1o7LnQ-jSZBO5w _model_server_result.datetime_utc '2024-11-26 02:06:21' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 4qsw # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"H","auth_seq_id":1207}' # _entry.id 4QSW # _exptl.entry_id 4QSW _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 258.228 _entity.id 4 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 5-methyluridine _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 4QSW _cell.length_a 79.59 _cell.length_b 79.59 _cell.length_c 138.421 _cell.Z_PDB 12 _cell.pdbx_unique_axis ? # _symmetry.entry_id 4QSW _symmetry.cell_setting ? _symmetry.Int_Tables_number 179 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 65 2 2' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 4 _struct_asym.id H _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _chem_comp.formula 'C10 H14 N2 O6' _chem_comp.formula_weight 258.228 _chem_comp.id 38T _chem_comp.mon_nstd_flag . _chem_comp.name 5-methyluridine _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag OAC CAM 38T doub 1 n n NAI CAM 38T sing 2 n n NAI CAL 38T sing 3 n n OAB CAL 38T doub 4 n n CAM NAR 38T sing 5 n n O2' C2' 38T sing 6 n n C2' C3' 38T sing 7 n n C2' C1' 38T sing 8 n n CAL CAK 38T sing 9 n n O3' C3' 38T sing 10 n n NAR C1' 38T sing 11 n n NAR CAG 38T sing 12 n n C3' C4' 38T sing 13 n n C1' O4' 38T sing 14 n n CAK CAG 38T doub 15 n n CAK CAA 38T sing 16 n n C4' O4' 38T sing 17 n n C4' C5' 38T sing 18 n n O5' C5' 38T sing 19 n n NAI H1 38T sing 20 n n CAA H2 38T sing 21 n n CAA H3 38T sing 22 n n CAA H4 38T sing 23 n n CAG H5 38T sing 24 n n C1' H6 38T sing 25 n n C4' H7 38T sing 26 n n C5' H8 38T sing 27 n n C5' H9 38T sing 28 n n O5' H10 38T sing 29 n n C3' H11 38T sing 30 n n O3' H12 38T sing 31 n n C2' H13 38T sing 32 n n O2' H14 38T sing 33 n n # _atom_sites.entry_id 4QSW _atom_sites.fract_transf_matrix[1][1] 0.012564 _atom_sites.fract_transf_matrix[1][2] 0.007254 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.014508 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.007224 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 SO4 A 1 1201 1 SO4 SO4 . C 3 EDO A 1 1202 2 EDO EDO . D 3 EDO A 1 1203 3 EDO EDO . E 3 EDO A 1 1204 4 EDO EDO . F 3 EDO A 1 1205 5 EDO EDO . G 3 EDO A 1 1206 6 EDO EDO . H 4 38T A 1 1207 1 38T DRG . I 5 HOH A 1 1301 1 HOH HOH . I 5 HOH A 2 1302 2 HOH HOH . I 5 HOH A 3 1303 5 HOH HOH . I 5 HOH A 4 1304 6 HOH HOH . I 5 HOH A 5 1305 7 HOH HOH . I 5 HOH A 6 1306 8 HOH HOH . I 5 HOH A 7 1307 9 HOH HOH . I 5 HOH A 8 1308 10 HOH HOH . I 5 HOH A 9 1309 11 HOH HOH . I 5 HOH A 10 1310 12 HOH HOH . I 5 HOH A 11 1311 13 HOH HOH . I 5 HOH A 12 1312 14 HOH HOH . I 5 HOH A 13 1313 15 HOH HOH . I 5 HOH A 14 1314 16 HOH HOH . I 5 HOH A 15 1315 18 HOH HOH . I 5 HOH A 16 1316 19 HOH HOH . I 5 HOH A 17 1317 20 HOH HOH . I 5 HOH A 18 1318 21 HOH HOH . I 5 HOH A 19 1319 22 HOH HOH . I 5 HOH A 20 1320 23 HOH HOH . I 5 HOH A 21 1321 24 HOH HOH . I 5 HOH A 22 1322 25 HOH HOH . I 5 HOH A 23 1323 26 HOH HOH . I 5 HOH A 24 1324 27 HOH HOH . I 5 HOH A 25 1325 28 HOH HOH . I 5 HOH A 26 1326 29 HOH HOH . I 5 HOH A 27 1327 30 HOH HOH . I 5 HOH A 28 1328 31 HOH HOH . I 5 HOH A 29 1329 32 HOH HOH . I 5 HOH A 30 1330 33 HOH HOH . I 5 HOH A 31 1331 34 HOH HOH . I 5 HOH A 32 1332 35 HOH HOH . I 5 HOH A 33 1333 36 HOH HOH . I 5 HOH A 34 1334 37 HOH HOH . I 5 HOH A 35 1335 38 HOH HOH . I 5 HOH A 36 1336 39 HOH HOH . I 5 HOH A 37 1337 40 HOH HOH . I 5 HOH A 38 1338 41 HOH HOH . I 5 HOH A 39 1339 42 HOH HOH . I 5 HOH A 40 1340 43 HOH HOH . I 5 HOH A 41 1341 44 HOH HOH . I 5 HOH A 42 1342 45 HOH HOH . I 5 HOH A 43 1343 46 HOH HOH . I 5 HOH A 44 1344 47 HOH HOH . I 5 HOH A 45 1345 48 HOH HOH . I 5 HOH A 46 1346 49 HOH HOH . I 5 HOH A 47 1347 50 HOH HOH . I 5 HOH A 48 1348 51 HOH HOH . I 5 HOH A 49 1349 52 HOH HOH . I 5 HOH A 50 1350 53 HOH HOH . I 5 HOH A 51 1351 54 HOH HOH . I 5 HOH A 52 1352 55 HOH HOH . I 5 HOH A 53 1353 56 HOH HOH . I 5 HOH A 54 1354 57 HOH HOH . I 5 HOH A 55 1355 58 HOH HOH . I 5 HOH A 56 1356 59 HOH HOH . I 5 HOH A 57 1357 60 HOH HOH . I 5 HOH A 58 1358 61 HOH HOH . I 5 HOH A 59 1359 62 HOH HOH . I 5 HOH A 60 1360 63 HOH HOH . I 5 HOH A 61 1361 64 HOH HOH . I 5 HOH A 62 1362 65 HOH HOH . I 5 HOH A 63 1363 66 HOH HOH . I 5 HOH A 64 1364 67 HOH HOH . I 5 HOH A 65 1365 68 HOH HOH . I 5 HOH A 66 1366 69 HOH HOH . I 5 HOH A 67 1367 70 HOH HOH . I 5 HOH A 68 1368 72 HOH HOH . I 5 HOH A 69 1369 73 HOH HOH . I 5 HOH A 70 1370 74 HOH HOH . I 5 HOH A 71 1371 75 HOH HOH . I 5 HOH A 72 1372 76 HOH HOH . I 5 HOH A 73 1373 77 HOH HOH . I 5 HOH A 74 1374 78 HOH HOH . I 5 HOH A 75 1375 79 HOH HOH . I 5 HOH A 76 1376 81 HOH HOH . I 5 HOH A 77 1377 82 HOH HOH . I 5 HOH A 78 1378 83 HOH HOH . I 5 HOH A 79 1379 84 HOH HOH . I 5 HOH A 80 1380 85 HOH HOH . I 5 HOH A 81 1381 86 HOH HOH . I 5 HOH A 82 1382 87 HOH HOH . I 5 HOH A 83 1383 88 HOH HOH . I 5 HOH A 84 1384 89 HOH HOH . I 5 HOH A 85 1385 90 HOH HOH . I 5 HOH A 86 1386 91 HOH HOH . I 5 HOH A 87 1387 92 HOH HOH . I 5 HOH A 88 1388 93 HOH HOH . I 5 HOH A 89 1389 94 HOH HOH . I 5 HOH A 90 1390 95 HOH HOH . I 5 HOH A 91 1391 96 HOH HOH . I 5 HOH A 92 1392 97 HOH HOH . I 5 HOH A 93 1393 98 HOH HOH . I 5 HOH A 94 1394 99 HOH HOH . I 5 HOH A 95 1395 100 HOH HOH . I 5 HOH A 96 1396 101 HOH HOH . I 5 HOH A 97 1397 102 HOH HOH . I 5 HOH A 98 1398 103 HOH HOH . I 5 HOH A 99 1399 104 HOH HOH . I 5 HOH A 100 1400 106 HOH HOH . I 5 HOH A 101 1401 107 HOH HOH . I 5 HOH A 102 1402 108 HOH HOH . I 5 HOH A 103 1403 109 HOH HOH . I 5 HOH A 104 1404 111 HOH HOH . I 5 HOH A 105 1405 112 HOH HOH . I 5 HOH A 106 1406 114 HOH HOH . I 5 HOH A 107 1407 115 HOH HOH . I 5 HOH A 108 1408 118 HOH HOH . I 5 HOH A 109 1409 120 HOH HOH . I 5 HOH A 110 1410 121 HOH HOH . I 5 HOH A 111 1411 123 HOH HOH . I 5 HOH A 112 1412 124 HOH HOH . I 5 HOH A 113 1413 125 HOH HOH . I 5 HOH A 114 1414 126 HOH HOH . I 5 HOH A 115 1415 127 HOH HOH . I 5 HOH A 116 1416 128 HOH HOH . I 5 HOH A 117 1417 129 HOH HOH . I 5 HOH A 118 1418 130 HOH HOH . I 5 HOH A 119 1419 131 HOH HOH . I 5 HOH A 120 1420 132 HOH HOH . I 5 HOH A 121 1421 133 HOH HOH . I 5 HOH A 122 1422 134 HOH HOH . I 5 HOH A 123 1423 135 HOH HOH . I 5 HOH A 124 1424 136 HOH HOH . I 5 HOH A 125 1425 139 HOH HOH . I 5 HOH A 126 1426 140 HOH HOH . I 5 HOH A 127 1427 141 HOH HOH . I 5 HOH A 128 1428 142 HOH HOH . I 5 HOH A 129 1429 143 HOH HOH . I 5 HOH A 130 1430 144 HOH HOH . I 5 HOH A 131 1431 145 HOH HOH . I 5 HOH A 132 1432 146 HOH HOH . I 5 HOH A 133 1433 147 HOH HOH . I 5 HOH A 134 1434 148 HOH HOH . I 5 HOH A 135 1435 149 HOH HOH . I 5 HOH A 136 1436 150 HOH HOH . I 5 HOH A 137 1437 151 HOH HOH . I 5 HOH A 138 1438 152 HOH HOH . I 5 HOH A 139 1439 153 HOH HOH . I 5 HOH A 140 1440 154 HOH HOH . I 5 HOH A 141 1441 155 HOH HOH . I 5 HOH A 142 1442 158 HOH HOH . I 5 HOH A 143 1443 159 HOH HOH . I 5 HOH A 144 1444 160 HOH HOH . I 5 HOH A 145 1445 161 HOH HOH . I 5 HOH A 146 1446 162 HOH HOH . I 5 HOH A 147 1447 163 HOH HOH . I 5 HOH A 148 1448 164 HOH HOH . I 5 HOH A 149 1449 165 HOH HOH . I 5 HOH A 150 1450 166 HOH HOH . I 5 HOH A 151 1451 167 HOH HOH . I 5 HOH A 152 1452 169 HOH HOH . I 5 HOH A 153 1453 170 HOH HOH . I 5 HOH A 154 1454 171 HOH HOH . I 5 HOH A 155 1455 172 HOH HOH . I 5 HOH A 156 1456 173 HOH HOH . I 5 HOH A 157 1457 174 HOH HOH . I 5 HOH A 158 1458 175 HOH HOH . I 5 HOH A 159 1459 177 HOH HOH . I 5 HOH A 160 1460 178 HOH HOH . I 5 HOH A 161 1461 179 HOH HOH . I 5 HOH A 162 1462 180 HOH HOH . I 5 HOH A 163 1463 181 HOH HOH . I 5 HOH A 164 1464 182 HOH HOH . I 5 HOH A 165 1465 183 HOH HOH . I 5 HOH A 166 1466 184 HOH HOH . I 5 HOH A 167 1467 185 HOH HOH . I 5 HOH A 168 1468 186 HOH HOH . I 5 HOH A 169 1469 187 HOH HOH . I 5 HOH A 170 1470 188 HOH HOH . I 5 HOH A 171 1471 189 HOH HOH . I 5 HOH A 172 1472 190 HOH HOH . I 5 HOH A 173 1473 191 HOH HOH . I 5 HOH A 174 1474 192 HOH HOH . I 5 HOH A 175 1475 194 HOH HOH . I 5 HOH A 176 1476 195 HOH HOH . I 5 HOH A 177 1477 196 HOH HOH . I 5 HOH A 178 1478 197 HOH HOH . I 5 HOH A 179 1479 198 HOH HOH . I 5 HOH A 180 1480 199 HOH HOH . I 5 HOH A 181 1481 200 HOH HOH . I 5 HOH A 182 1482 201 HOH HOH . I 5 HOH A 183 1483 202 HOH HOH . I 5 HOH A 184 1484 203 HOH HOH . I 5 HOH A 185 1485 205 HOH HOH . I 5 HOH A 186 1486 206 HOH HOH . I 5 HOH A 187 1487 207 HOH HOH . I 5 HOH A 188 1488 208 HOH HOH . I 5 HOH A 189 1489 209 HOH HOH . I 5 HOH A 190 1490 210 HOH HOH . I 5 HOH A 191 1491 211 HOH HOH . I 5 HOH A 192 1492 212 HOH HOH . I 5 HOH A 193 1493 214 HOH HOH . I 5 HOH A 194 1494 215 HOH HOH . I 5 HOH A 195 1495 216 HOH HOH . I 5 HOH A 196 1496 217 HOH HOH . I 5 HOH A 197 1497 218 HOH HOH . I 5 HOH A 198 1498 220 HOH HOH . I 5 HOH A 199 1499 221 HOH HOH . I 5 HOH A 200 1500 222 HOH HOH . I 5 HOH A 201 1501 224 HOH HOH . I 5 HOH A 202 1502 225 HOH HOH . I 5 HOH A 203 1503 226 HOH HOH . I 5 HOH A 204 1504 227 HOH HOH . I 5 HOH A 205 1505 228 HOH HOH . I 5 HOH A 206 1506 229 HOH HOH . I 5 HOH A 207 1507 230 HOH HOH . I 5 HOH A 208 1508 231 HOH HOH . I 5 HOH A 209 1509 232 HOH HOH . I 5 HOH A 210 1510 233 HOH HOH . I 5 HOH A 211 1511 234 HOH HOH . I 5 HOH A 212 1512 235 HOH HOH . I 5 HOH A 213 1513 236 HOH HOH . I 5 HOH A 214 1514 237 HOH HOH . I 5 HOH A 215 1515 238 HOH HOH . I 5 HOH A 216 1516 239 HOH HOH . I 5 HOH A 217 1517 240 HOH HOH . I 5 HOH A 218 1518 241 HOH HOH . I 5 HOH A 219 1519 242 HOH HOH . I 5 HOH A 220 1520 243 HOH HOH . I 5 HOH A 221 1521 244 HOH HOH . I 5 HOH A 222 1522 245 HOH HOH . I 5 HOH A 223 1523 246 HOH HOH . I 5 HOH A 224 1524 247 HOH HOH . I 5 HOH A 225 1525 248 HOH HOH . I 5 HOH A 226 1526 249 HOH HOH . I 5 HOH A 227 1527 250 HOH HOH . I 5 HOH A 228 1528 251 HOH HOH . I 5 HOH A 229 1529 252 HOH HOH . I 5 HOH A 230 1530 253 HOH HOH . I 5 HOH A 231 1531 254 HOH HOH . I 5 HOH A 232 1532 255 HOH HOH . I 5 HOH A 233 1533 256 HOH HOH . I 5 HOH A 234 1534 257 HOH HOH . I 5 HOH A 235 1535 258 HOH HOH . I 5 HOH A 236 1536 259 HOH HOH . I 5 HOH A 237 1537 260 HOH HOH . I 5 HOH A 238 1538 261 HOH HOH . I 5 HOH A 239 1539 262 HOH HOH . I 5 HOH A 240 1540 263 HOH HOH . I 5 HOH A 241 1541 264 HOH HOH . I 5 HOH A 242 1542 265 HOH HOH . I 5 HOH A 243 1543 266 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 O OAC 38T . . . H 4 28.334 44.472 -12.704 1 44.09 ? OAC 38T 1207 A 1 HETATM 2 C CAM 38T . . . H 4 27.317 44.579 -12.007 1 46.09 ? CAM 38T 1207 A 1 HETATM 3 N NAI 38T . . . H 4 26.294 43.725 -12.328 1 44.27 ? NAI 38T 1207 A 1 HETATM 4 C CAL 38T . . . H 4 25.067 43.731 -11.644 1 36.8 ? CAL 38T 1207 A 1 HETATM 5 O OAB 38T . . . H 4 24.275 42.89 -12.04 1 30.54 ? OAB 38T 1207 A 1 HETATM 6 C CAK 38T . . . H 4 24.857 44.622 -10.604 1 36.19 ? CAK 38T 1207 A 1 HETATM 7 C CAA 38T . . . H 4 23.652 44.662 -9.846 1 37.52 ? CAA 38T 1207 A 1 HETATM 8 C CAG 38T . . . H 4 25.916 45.506 -10.286 1 40.84 ? CAG 38T 1207 A 1 HETATM 9 N NAR 38T . . . H 4 27.146 45.473 -10.997 1 42.02 ? NAR 38T 1207 A 1 HETATM 10 C C1' 38T . . . H 4 28.249 46.418 -10.673 1 53.46 ? C1' 38T 1207 A 1 HETATM 11 O O4' 38T . . . H 4 28.162 46.992 -9.301 1 58.03 ? O4' 38T 1207 A 1 HETATM 12 C C4' 38T . . . H 4 27.887 48.434 -9.448 1 58.04 ? C4' 38T 1207 A 1 HETATM 13 C C5' 38T . . . H 4 26.943 48.961 -8.379 1 58.23 ? C5' 38T 1207 A 1 HETATM 14 O O5' 38T . . . H 4 25.695 48.338 -8.688 1 48.67 ? O5' 38T 1207 A 1 HETATM 15 C C3' 38T . . . H 4 27.289 48.576 -10.881 1 59.6 ? C3' 38T 1207 A 1 HETATM 16 O O3' 38T . . . H 4 27.389 49.956 -11.395 1 64.31 ? O3' 38T 1207 A 1 HETATM 17 C C2' 38T . . . H 4 28.185 47.621 -11.654 1 57.85 ? C2' 38T 1207 A 1 HETATM 18 O O2' 38T . . . H 4 29.509 48.223 -11.896 1 50.78 ? O2' 38T 1207 A 1 # _model_server_stats.io_time_ms 7 _model_server_stats.parse_time_ms 6 _model_server_stats.create_model_time_ms 3 _model_server_stats.query_time_ms 266 _model_server_stats.encode_time_ms 4 _model_server_stats.element_count 18 #