data_4QTF # _model_server_result.job_id 2y7x-RoPKGdJr_YgLKC5OA _model_server_result.datetime_utc '2024-11-18 12:47:54' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 4qtf # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"B","auth_seq_id":501}' # _entry.id 4QTF # _exptl.entry_id 4QTF _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 921.899 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description GLCNAC(BETA1-4)-MURNAC(1,6-ANHYDRO)-L-ALA-GAMMA-D-GLU-MESO-A2PM-D-ALA _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 4QTF _cell.length_a 57.272 _cell.length_b 65.881 _cell.length_c 207.456 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 4QTF _symmetry.cell_setting ? _symmetry.Int_Tables_number 20 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'C 2 2 21' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id ? monomeric 1 author_defined_assembly 1 PISA dimeric 2 software_defined_assembly 2 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,B,C,D 1 1 A,B,C,D 2 1,2 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 4_555 x,-y,-z 1 0 0 0 -1 0 0 0 -1 0 0 0 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id B _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _struct_conn.conn_type_id covale _struct_conn.details ? _struct_conn.id covale1 _struct_conn.ptnr1_label_asym_id A _struct_conn.ptnr1_label_atom_id SG _struct_conn.ptnr1_label_comp_id CYS _struct_conn.ptnr1_label_seq_id 296 _struct_conn.ptnr1_auth_asym_id A _struct_conn.ptnr1_auth_comp_id CYS _struct_conn.ptnr1_auth_seq_id 354 _struct_conn.ptnr1_symmetry 1_555 _struct_conn.ptnr2_label_asym_id C _struct_conn.ptnr2_label_atom_id CAT _struct_conn.ptnr2_label_comp_id 3V5 _struct_conn.ptnr2_label_seq_id . _struct_conn.ptnr2_auth_asym_id A _struct_conn.ptnr2_auth_comp_id 3V5 _struct_conn.ptnr2_auth_seq_id 502 _struct_conn.ptnr2_symmetry 1_555 _struct_conn.pdbx_ptnr1_PDB_ins_code ? _struct_conn.pdbx_ptnr1_label_alt_id ? _struct_conn.pdbx_ptnr1_standard_comp_id ? _struct_conn.pdbx_ptnr2_PDB_ins_code ? _struct_conn.pdbx_ptnr2_label_alt_id ? _struct_conn.pdbx_ptnr3_PDB_ins_code ? _struct_conn.pdbx_ptnr3_label_alt_id ? _struct_conn.pdbx_ptnr3_label_asym_id ? _struct_conn.pdbx_ptnr3_label_atom_id ? _struct_conn.pdbx_ptnr3_label_comp_id ? _struct_conn.pdbx_ptnr3_label_seq_id ? _struct_conn.pdbx_PDB_id ? _struct_conn.pdbx_dist_value 1.655 _struct_conn.pdbx_value_order ? # _chem_comp.formula 'C37 H59 N7 O20' _chem_comp.formula_weight 921.899 _chem_comp.id MLD _chem_comp.mon_nstd_flag . _chem_comp.name GLCNAC(BETA1-4)-MURNAC(1,6-ANHYDRO)-L-ALA-GAMMA-D-GLU-MESO-A2PM-D-ALA _chem_comp.type non-polymer _chem_comp.pdbx_synonyms 2-ACETAMIDO-2-DEOXY-BETA-D-GLUCOPYRANOSE(BETA1-4)-2-ACETAMIDO-1,6-ANHYDRO-3-O-[(R)-1-CARBOXYETHYL]-2-DEOXY-BETA-D-GLUCOPYRANOSE-L-ALANYL-GAMMA-D-GLUTAMYL-MESO-DIAMINOPIMELYL-D-ALANINE # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag CAA CAB MLD sing 275 n n CAA HAA1 MLD sing 276 n n CAA HAA2 MLD sing 277 n n CAA HAA3 MLD sing 278 n n CAB OAC MLD doub 279 n n CAB N2 MLD sing 280 n n N2 C2 MLD sing 281 n n N2 HN2 MLD sing 282 n n C2 C3 MLD sing 283 n n C2 C1 MLD sing 284 n n C2 H2 MLD sing 285 n n C3 O3 MLD sing 286 n n C3 C4 MLD sing 287 n n C3 H3 MLD sing 288 n n O3 HO3 MLD sing 289 n n C4 O4 MLD sing 290 n n C4 C5 MLD sing 291 n n C4 H4 MLD sing 292 n n O4 HO4 MLD sing 293 n n C5 C6 MLD sing 294 n n C5 O5 MLD sing 295 n n C5 H5 MLD sing 296 n n C6 O6 MLD sing 297 n n C6 H61 MLD sing 298 n n C6 H62 MLD sing 299 n n O6 HO6 MLD sing 300 n n O5 C1 MLD sing 301 n n C1 O1 MLD sing 302 n n C1 H1 MLD sing 303 n n O1 CA4 MLD sing 304 n n CA4 CA5 MLD sing 305 n n CA4 CA3 MLD sing 306 n n CA4 HA4 MLD sing 307 n n CA5 OA5 MLD sing 308 n n CA5 CA6 MLD sing 309 n n CA5 HA5 MLD sing 310 n n OA5 CA1 MLD sing 311 n n CA6 OA6 MLD sing 312 n n CA6 HA61 MLD sing 313 n n CA6 HA62 MLD sing 314 n n OA6 CA1 MLD sing 315 n n CA1 CA2 MLD sing 316 n n CA1 HA1 MLD sing 317 n n CA2 NAD MLD sing 318 n n CA2 CA3 MLD sing 319 n n CA2 HA2 MLD sing 320 n n NAD CAE MLD sing 321 n n NAD HNAD MLD sing 322 n n CAE CAF MLD sing 323 n n CAE OAG MLD doub 324 n n CAF HAF1 MLD sing 325 n n CAF HAF2 MLD sing 326 n n CAF HAF3 MLD sing 327 n n CA3 OAH MLD sing 328 n n CA3 HA3 MLD sing 329 n n OAH CAI MLD sing 330 n n CAI CAJ MLD sing 331 n n CAI CAL MLD sing 332 n n CAI HAI MLD sing 333 n n CAJ HAJ1 MLD sing 334 n n CAJ HAJ2 MLD sing 335 n n CAJ HAJ3 MLD sing 336 n n CAL OAM MLD doub 337 n n CAL N MLD sing 338 n n N CA MLD sing 339 n n N HN MLD sing 340 n n CA CB MLD sing 341 n n CA C MLD sing 342 n n CA HA MLD sing 343 n n CB HB1 MLD sing 344 n n CB HB2 MLD sing 345 n n CB HB3 MLD sing 346 n n C O MLD doub 347 n n C NAN MLD sing 348 n n NAN CAO MLD sing 349 n n NAN HNAN MLD sing 350 n n CAO CAP MLD sing 351 n n CAO CBB MLD sing 352 n n CAO HAO MLD sing 353 n n CAP OBA MLD sing 354 n n CAP OAQ MLD doub 355 n n OBA HOBA MLD sing 356 n n CBB CBC MLD sing 357 n n CBB HBB1 MLD sing 358 n n CBB HBB2 MLD sing 359 n n CBC CBD MLD sing 360 n n CBC HBC1 MLD sing 361 n n CBC HBC2 MLD sing 362 n n CBD OBE MLD doub 363 n n CBD NBF MLD sing 364 n n NBF CBG MLD sing 365 n n NBF HNBF MLD sing 366 n n CBG CBH MLD sing 367 n n CBG CBP MLD sing 368 n n CBG HBG MLD sing 369 n n CBH OBI MLD doub 370 n n CBH NBJ MLD sing 371 n n NBJ CBK MLD sing 372 n n NBJ HNBJ MLD sing 373 n n CBK CBL MLD sing 374 n n CBK CBM MLD sing 375 n n CBK HBK MLD sing 376 n n CBL HBL1 MLD sing 377 n n CBL HBL2 MLD sing 378 n n CBL HBL3 MLD sing 379 n n CBM OBO MLD doub 380 n n CBM OBN MLD sing 381 n n OBN HOBN MLD sing 382 n n CBP CBQ MLD sing 383 n n CBP HBP1 MLD sing 384 n n CBP HBP2 MLD sing 385 n n CBQ CBR MLD sing 386 n n CBQ HBQ1 MLD sing 387 n n CBQ HBQ2 MLD sing 388 n n CBR CBS MLD sing 389 n n CBR HBR1 MLD sing 390 n n CBR HBR2 MLD sing 391 n n CBS CBT MLD sing 392 n n CBS NBW MLD sing 393 n n CBS HBS MLD sing 394 n n CBT OBV MLD doub 395 n n CBT OBU MLD sing 396 n n OBU HOBU MLD sing 397 n n NBW HBW1 MLD sing 398 n n NBW HBW2 MLD sing 399 n n # _atom_sites.entry_id 4QTF _atom_sites.fract_transf_matrix[1][1] 0.017461 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.015179 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.00482 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 MLD A 1 501 501 MLD MLD . C 3 3V5 A 1 502 354 3V5 CYS . D 4 HOH A 1 601 1 HOH HOH . D 4 HOH A 2 602 2 HOH HOH . D 4 HOH A 3 603 3 HOH HOH . D 4 HOH A 4 604 4 HOH HOH . D 4 HOH A 5 605 5 HOH HOH . D 4 HOH A 6 606 6 HOH HOH . D 4 HOH A 7 607 7 HOH HOH . D 4 HOH A 8 608 8 HOH HOH . D 4 HOH A 9 609 9 HOH HOH . D 4 HOH A 10 610 10 HOH HOH . D 4 HOH A 11 611 11 HOH HOH . D 4 HOH A 12 612 12 HOH HOH . D 4 HOH A 13 613 13 HOH HOH . D 4 HOH A 14 614 14 HOH HOH . D 4 HOH A 15 615 15 HOH HOH . D 4 HOH A 16 616 16 HOH HOH . D 4 HOH A 17 617 17 HOH HOH . D 4 HOH A 18 618 18 HOH HOH . D 4 HOH A 19 619 19 HOH HOH . D 4 HOH A 20 620 20 HOH HOH . D 4 HOH A 21 621 21 HOH HOH . D 4 HOH A 22 622 22 HOH HOH . D 4 HOH A 23 623 23 HOH HOH . D 4 HOH A 24 624 24 HOH HOH . D 4 HOH A 25 625 25 HOH HOH . D 4 HOH A 26 626 26 HOH HOH . D 4 HOH A 27 627 27 HOH HOH . D 4 HOH A 28 628 28 HOH HOH . D 4 HOH A 29 629 29 HOH HOH . D 4 HOH A 30 630 30 HOH HOH . D 4 HOH A 31 631 31 HOH HOH . D 4 HOH A 32 632 32 HOH HOH . D 4 HOH A 33 633 33 HOH HOH . D 4 HOH A 34 634 34 HOH HOH . D 4 HOH A 35 635 35 HOH HOH . D 4 HOH A 36 636 36 HOH HOH . D 4 HOH A 37 637 37 HOH HOH . D 4 HOH A 38 638 38 HOH HOH . D 4 HOH A 39 639 39 HOH HOH . D 4 HOH A 40 640 40 HOH HOH . D 4 HOH A 41 641 41 HOH HOH . D 4 HOH A 42 642 42 HOH HOH . D 4 HOH A 43 643 43 HOH HOH . D 4 HOH A 44 644 44 HOH HOH . D 4 HOH A 45 645 45 HOH HOH . D 4 HOH A 46 646 46 HOH HOH . D 4 HOH A 47 647 47 HOH HOH . D 4 HOH A 48 648 48 HOH HOH . D 4 HOH A 49 649 49 HOH HOH . D 4 HOH A 50 650 50 HOH HOH . D 4 HOH A 51 651 51 HOH HOH . D 4 HOH A 52 652 52 HOH HOH . D 4 HOH A 53 653 53 HOH HOH . D 4 HOH A 54 654 54 HOH HOH . D 4 HOH A 55 655 55 HOH HOH . D 4 HOH A 56 656 56 HOH HOH . D 4 HOH A 57 657 57 HOH HOH . D 4 HOH A 58 658 58 HOH HOH . D 4 HOH A 59 659 59 HOH HOH . D 4 HOH A 60 660 60 HOH HOH . D 4 HOH A 61 661 61 HOH HOH . D 4 HOH A 62 662 62 HOH HOH . D 4 HOH A 63 663 63 HOH HOH . D 4 HOH A 64 664 64 HOH HOH . D 4 HOH A 65 665 65 HOH HOH . D 4 HOH A 66 666 66 HOH HOH . D 4 HOH A 67 667 67 HOH HOH . D 4 HOH A 68 668 68 HOH HOH . D 4 HOH A 69 669 69 HOH HOH . D 4 HOH A 70 670 70 HOH HOH . D 4 HOH A 71 671 71 HOH HOH . D 4 HOH A 72 672 72 HOH HOH . D 4 HOH A 73 673 73 HOH HOH . D 4 HOH A 74 674 74 HOH HOH . D 4 HOH A 75 675 75 HOH HOH . D 4 HOH A 76 676 76 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 N N2 MLD . . . B 2 2.3 22.049 -14.262 1 98.88 ? N2 MLD 501 A 1 HETATM 2 C C2 MLD . . . B 2 3.498 21.303 -13.912 1 97.66 ? C2 MLD 501 A 1 HETATM 3 O O5 MLD . . . B 2 3.914 19.82 -12.074 1 97.91 ? O5 MLD 501 A 1 HETATM 4 C C1 MLD . . . B 2 3.205 19.92 -13.308 1 95.77 ? C1 MLD 501 A 1 HETATM 5 O O1 MLD . . . B 2 1.763 19.76 -13.204 1 105.49 ? O1 MLD 501 A 1 HETATM 6 C CA4 MLD . . . B 2 1.118 18.605 -12.616 1 88.98 ? CA4 MLD 501 A 1 HETATM 7 C CA5 MLD . . . B 2 1.303 18.576 -11.062 1 89.67 ? CA5 MLD 501 A 1 HETATM 8 O OA5 MLD . . . B 2 1.965 17.371 -10.729 1 82.18 ? OA5 MLD 501 A 1 HETATM 9 C CA6 MLD . . . B 2 0.013 18.437 -10.243 1 85.22 ? CA6 MLD 501 A 1 HETATM 10 O OA6 MLD . . . B 2 -0.251 17.042 -10.363 1 89.4 ? OA6 MLD 501 A 1 HETATM 11 C CA1 MLD . . . B 2 0.913 16.422 -10.982 1 85.03 ? CA1 MLD 501 A 1 HETATM 12 C CA2 MLD . . . B 2 0.846 16.125 -12.533 1 68.79 ? CA2 MLD 501 A 1 HETATM 13 N NAD MLD . . . B 2 1.328 14.778 -13.003 1 71.51 ? NAD MLD 501 A 1 HETATM 14 C CAE MLD . . . B 2 2.11 13.768 -12.444 1 51.98 ? CAE MLD 501 A 1 HETATM 15 C CAF MLD . . . B 2 2.542 13.824 -11.103 1 30.06 ? CAF MLD 501 A 1 HETATM 16 O OAG MLD . . . B 2 2.531 12.765 -13.011 1 57.27 ? OAG MLD 501 A 1 HETATM 17 C CA3 MLD . . . B 2 1.533 17.297 -13.339 1 75.01 ? CA3 MLD 501 A 1 HETATM 18 O OAH MLD . . . B 2 1.326 17.389 -14.807 1 66.98 ? OAH MLD 501 A 1 HETATM 19 C CAI MLD . . . B 2 2.271 17.998 -15.802 1 56.71 ? CAI MLD 501 A 1 HETATM 20 C CAJ MLD . . . B 2 2.045 19.465 -16.107 1 60.88 ? CAJ MLD 501 A 1 HETATM 21 C CAL MLD . . . B 2 2.453 17.431 -17.235 1 55.87 ? CAL MLD 501 A 1 HETATM 22 O OAM MLD . . . B 2 3.369 16.639 -17.323 1 36.4 ? OAM MLD 501 A 1 HETATM 23 N N MLD . . . B 2 1.746 17.736 -18.394 1 51.25 ? N MLD 501 A 1 HETATM 24 C CA MLD . . . B 2 1.954 17.004 -19.676 1 50.17 ? CA MLD 501 A 1 HETATM 25 C CB MLD . . . B 2 0.937 17.348 -20.784 1 51.66 ? CB MLD 501 A 1 HETATM 26 C C MLD . . . B 2 3.371 17.242 -20.156 1 56.13 ? C MLD 501 A 1 HETATM 27 O O MLD . . . B 2 3.819 18.361 -19.981 1 48.91 ? O MLD 501 A 1 HETATM 28 N NAN MLD . . . B 2 4.099 16.233 -20.686 1 53.92 ? NAN MLD 501 A 1 HETATM 29 C CAO MLD . . . B 2 5.462 16.373 -21.112 1 51.22 ? CAO MLD 501 A 1 HETATM 30 C CAP MLD . . . B 2 6.482 15.333 -20.698 1 59.84 ? CAP MLD 501 A 1 HETATM 31 O OBA MLD . . . B 2 7.543 15.296 -21.358 1 67.99 ? OBA MLD 501 A 1 HETATM 32 O OAQ MLD . . . B 2 6.35 14.554 -19.723 1 52.05 ? OAQ MLD 501 A 1 HETATM 33 C CBB MLD . . . B 2 5.349 16.52 -22.614 1 53.34 ? CBB MLD 501 A 1 HETATM 34 C CBC MLD . . . B 2 6.059 17.849 -22.83 1 58.88 ? CBC MLD 501 A 1 HETATM 35 C CBD MLD . . . B 2 5.702 18.336 -24.19 1 71.35 ? CBD MLD 501 A 1 HETATM 36 O OBE MLD . . . B 2 5.11 19.395 -24.261 1 79.04 ? OBE MLD 501 A 1 HETATM 37 N NBF MLD . . . B 2 5.985 17.525 -25.207 1 80.52 ? NBF MLD 501 A 1 HETATM 38 C CBG MLD . . . B 2 5.439 17.675 -26.546 1 82.76 ? CBG MLD 501 A 1 HETATM 39 C CBP MLD . . . B 2 6.373 16.994 -27.544 1 84.45 ? CBP MLD 501 A 1 HETATM 40 C CBQ MLD . . . B 2 5.8 16.969 -28.958 1 86.96 ? CBQ MLD 501 A 1 HETATM 41 C CBR MLD . . . B 2 5.622 18.358 -29.575 1 92.63 ? CBR MLD 501 A 1 HETATM 42 C CBS MLD . . . B 2 6.763 19.387 -29.443 1 91.61 ? CBS MLD 501 A 1 HETATM 43 C CBT MLD . . . B 2 8.149 18.843 -29.734 1 97.27 ? CBT MLD 501 A 1 HETATM 44 O OBV MLD . . . B 2 8.997 19.631 -30.204 1 90.5 ? OBV MLD 501 A 1 HETATM 45 O OBU MLD . . . B 2 8.431 17.643 -29.513 1 103.42 ? OBU MLD 501 A 1 HETATM 46 N NBW MLD . . . B 2 6.714 20.003 -28.134 1 75.29 ? NBW MLD 501 A 1 # _model_server_stats.io_time_ms 10 _model_server_stats.parse_time_ms 8 _model_server_stats.create_model_time_ms 6 _model_server_stats.query_time_ms 256 _model_server_stats.encode_time_ms 4 _model_server_stats.element_count 46 #