data_4QTF
#
_model_server_result.job_id            Y8UH0paYXOB0GXpYje1N8Q 
_model_server_result.datetime_utc      '2024-11-18 12:28:50' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          4qtf 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"C","auth_seq_id":502}' 
#
_entry.id    4QTF 
#
_exptl.entry_id    4QTF 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              289.351 
_entity.id                          3 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            (3S,5S)-3-({[(aminomethyl)amino]methyl}sulfanyl)-5-[(2S)-1,3-dioxobutan-2-yl]-L-proline 
_entity.pdbx_number_of_molecules    1 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            4QTF 
_cell.length_a            57.272 
_cell.length_b            65.881 
_cell.length_c            207.456 
_cell.Z_PDB               8 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 4QTF 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        20 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'C 2 2 21' 
#
loop_
_pdbx_struct_assembly.method_details
_pdbx_struct_assembly.oligomeric_details
_pdbx_struct_assembly.oligomeric_count
_pdbx_struct_assembly.details
_pdbx_struct_assembly.id
? monomeric 1 author_defined_assembly 1 
PISA dimeric 2 software_defined_assembly 2 
#
loop_
_pdbx_struct_assembly_gen.asym_id_list
_pdbx_struct_assembly_gen.assembly_id
_pdbx_struct_assembly_gen.oper_expression
A,B,C,D 1 1 
A,B,C,D 2 1,2 
#
loop_
_pdbx_struct_oper_list.id
_pdbx_struct_oper_list.type
_pdbx_struct_oper_list.name
_pdbx_struct_oper_list.symmetry_operation
_pdbx_struct_oper_list.matrix[1][1]
_pdbx_struct_oper_list.matrix[1][2]
_pdbx_struct_oper_list.matrix[1][3]
_pdbx_struct_oper_list.matrix[2][1]
_pdbx_struct_oper_list.matrix[2][2]
_pdbx_struct_oper_list.matrix[2][3]
_pdbx_struct_oper_list.matrix[3][1]
_pdbx_struct_oper_list.matrix[3][2]
_pdbx_struct_oper_list.matrix[3][3]
_pdbx_struct_oper_list.vector[1]
_pdbx_struct_oper_list.vector[2]
_pdbx_struct_oper_list.vector[3]
1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 
2 'crystal symmetry operation' 4_555 x,-y,-z 1 0 0 0 -1 0 0 0 -1 0 0 0 
#
_struct_asym.details                        ? 
_struct_asym.entity_id                      3 
_struct_asym.id                             C 
_struct_asym.pdbx_modified                  N 
_struct_asym.pdbx_blank_PDB_chainid_flag    N 
#
_struct_conn.conn_type_id                   covale 
_struct_conn.details                        ? 
_struct_conn.id                             covale1 
_struct_conn.ptnr1_label_asym_id            A 
_struct_conn.ptnr1_label_atom_id            SG 
_struct_conn.ptnr1_label_comp_id            CYS 
_struct_conn.ptnr1_label_seq_id             296 
_struct_conn.ptnr1_auth_asym_id             A 
_struct_conn.ptnr1_auth_comp_id             CYS 
_struct_conn.ptnr1_auth_seq_id              354 
_struct_conn.ptnr1_symmetry                 1_555 
_struct_conn.ptnr2_label_asym_id            C 
_struct_conn.ptnr2_label_atom_id            CAT 
_struct_conn.ptnr2_label_comp_id            3V5 
_struct_conn.ptnr2_label_seq_id             . 
_struct_conn.ptnr2_auth_asym_id             A 
_struct_conn.ptnr2_auth_comp_id             3V5 
_struct_conn.ptnr2_auth_seq_id              502 
_struct_conn.ptnr2_symmetry                 1_555 
_struct_conn.pdbx_ptnr1_PDB_ins_code        ? 
_struct_conn.pdbx_ptnr1_label_alt_id        ? 
_struct_conn.pdbx_ptnr1_standard_comp_id    ? 
_struct_conn.pdbx_ptnr2_PDB_ins_code        ? 
_struct_conn.pdbx_ptnr2_label_alt_id        ? 
_struct_conn.pdbx_ptnr3_PDB_ins_code        ? 
_struct_conn.pdbx_ptnr3_label_alt_id        ? 
_struct_conn.pdbx_ptnr3_label_asym_id       ? 
_struct_conn.pdbx_ptnr3_label_atom_id       ? 
_struct_conn.pdbx_ptnr3_label_comp_id       ? 
_struct_conn.pdbx_ptnr3_label_seq_id        ? 
_struct_conn.pdbx_PDB_id                    ? 
_struct_conn.pdbx_dist_value                1.655 
_struct_conn.pdbx_value_order               ? 
#
_chem_comp.formula           'C11 H19 N3 O4 S' 
_chem_comp.formula_weight    289.351 
_chem_comp.id                3V5 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              (3S,5S)-3-({[(aminomethyl)amino]methyl}sulfanyl)-5-[(2S)-1,3-dioxobutan-2-yl]-L-proline 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     'olivanic acid analog, open from' 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
NAN CAJ 3V5 sing 1 n n 
NAN CAK 3V5 sing 2 n n 
CAJ NAB 3V5 sing 3 n n 
CAK SAQ 3V5 sing 4 n n 
SAQ CAW 3V5 sing 5 n n 
CAW CAX 3V5 sing 6 n n 
CAW CAM 3V5 sing 7 n n 
OAF CAS 3V5 doub 8 n n 
CAX CAS 3V5 sing 9 n n 
CAX NAO 3V5 sing 10 n n 
CAS OAH 3V5 sing 11 n n 
CAM CAV 3V5 sing 12 n n 
NAO CAV 3V5 sing 13 n n 
CAV CAY 3V5 sing 14 n n 
CAY CAT 3V5 sing 15 n n 
CAY CAR 3V5 sing 16 n n 
CAT OAG 3V5 doub 17 n n 
CAR CAA 3V5 sing 18 n n 
CAR OAE 3V5 doub 19 n n 
OAH H1 3V5 sing 20 n n 
CAX H2 3V5 sing 21 n n 
CAW H3 3V5 sing 22 n n 
CAK H4 3V5 sing 23 n n 
CAK H5 3V5 sing 24 n n 
NAN H6 3V5 sing 25 n n 
CAJ H8 3V5 sing 26 n n 
CAJ H9 3V5 sing 27 n n 
NAB H10 3V5 sing 28 n n 
NAB H11 3V5 sing 29 n n 
CAM H13 3V5 sing 30 n n 
CAM H14 3V5 sing 31 n n 
NAO H15 3V5 sing 32 n n 
CAV H17 3V5 sing 33 n n 
CAY H18 3V5 sing 34 n n 
CAA H19 3V5 sing 35 n n 
CAA H20 3V5 sing 36 n n 
CAA H21 3V5 sing 37 n n 
CAT H22 3V5 sing 38 n n 
#
_atom_sites.entry_id                     4QTF 
_atom_sites.fract_transf_matrix[1][1]    0.017461 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.015179 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.00482 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
B 2 MLD A 1 501 501 MLD MLD . 
C 3 3V5 A 1 502 354 3V5 CYS . 
D 4 HOH A 1 601 1 HOH HOH . 
D 4 HOH A 2 602 2 HOH HOH . 
D 4 HOH A 3 603 3 HOH HOH . 
D 4 HOH A 4 604 4 HOH HOH . 
D 4 HOH A 5 605 5 HOH HOH . 
D 4 HOH A 6 606 6 HOH HOH . 
D 4 HOH A 7 607 7 HOH HOH . 
D 4 HOH A 8 608 8 HOH HOH . 
D 4 HOH A 9 609 9 HOH HOH . 
D 4 HOH A 10 610 10 HOH HOH . 
D 4 HOH A 11 611 11 HOH HOH . 
D 4 HOH A 12 612 12 HOH HOH . 
D 4 HOH A 13 613 13 HOH HOH . 
D 4 HOH A 14 614 14 HOH HOH . 
D 4 HOH A 15 615 15 HOH HOH . 
D 4 HOH A 16 616 16 HOH HOH . 
D 4 HOH A 17 617 17 HOH HOH . 
D 4 HOH A 18 618 18 HOH HOH . 
D 4 HOH A 19 619 19 HOH HOH . 
D 4 HOH A 20 620 20 HOH HOH . 
D 4 HOH A 21 621 21 HOH HOH . 
D 4 HOH A 22 622 22 HOH HOH . 
D 4 HOH A 23 623 23 HOH HOH . 
D 4 HOH A 24 624 24 HOH HOH . 
D 4 HOH A 25 625 25 HOH HOH . 
D 4 HOH A 26 626 26 HOH HOH . 
D 4 HOH A 27 627 27 HOH HOH . 
D 4 HOH A 28 628 28 HOH HOH . 
D 4 HOH A 29 629 29 HOH HOH . 
D 4 HOH A 30 630 30 HOH HOH . 
D 4 HOH A 31 631 31 HOH HOH . 
D 4 HOH A 32 632 32 HOH HOH . 
D 4 HOH A 33 633 33 HOH HOH . 
D 4 HOH A 34 634 34 HOH HOH . 
D 4 HOH A 35 635 35 HOH HOH . 
D 4 HOH A 36 636 36 HOH HOH . 
D 4 HOH A 37 637 37 HOH HOH . 
D 4 HOH A 38 638 38 HOH HOH . 
D 4 HOH A 39 639 39 HOH HOH . 
D 4 HOH A 40 640 40 HOH HOH . 
D 4 HOH A 41 641 41 HOH HOH . 
D 4 HOH A 42 642 42 HOH HOH . 
D 4 HOH A 43 643 43 HOH HOH . 
D 4 HOH A 44 644 44 HOH HOH . 
D 4 HOH A 45 645 45 HOH HOH . 
D 4 HOH A 46 646 46 HOH HOH . 
D 4 HOH A 47 647 47 HOH HOH . 
D 4 HOH A 48 648 48 HOH HOH . 
D 4 HOH A 49 649 49 HOH HOH . 
D 4 HOH A 50 650 50 HOH HOH . 
D 4 HOH A 51 651 51 HOH HOH . 
D 4 HOH A 52 652 52 HOH HOH . 
D 4 HOH A 53 653 53 HOH HOH . 
D 4 HOH A 54 654 54 HOH HOH . 
D 4 HOH A 55 655 55 HOH HOH . 
D 4 HOH A 56 656 56 HOH HOH . 
D 4 HOH A 57 657 57 HOH HOH . 
D 4 HOH A 58 658 58 HOH HOH . 
D 4 HOH A 59 659 59 HOH HOH . 
D 4 HOH A 60 660 60 HOH HOH . 
D 4 HOH A 61 661 61 HOH HOH . 
D 4 HOH A 62 662 62 HOH HOH . 
D 4 HOH A 63 663 63 HOH HOH . 
D 4 HOH A 64 664 64 HOH HOH . 
D 4 HOH A 65 665 65 HOH HOH . 
D 4 HOH A 66 666 66 HOH HOH . 
D 4 HOH A 67 667 67 HOH HOH . 
D 4 HOH A 68 668 68 HOH HOH . 
D 4 HOH A 69 669 69 HOH HOH . 
D 4 HOH A 70 670 70 HOH HOH . 
D 4 HOH A 71 671 71 HOH HOH . 
D 4 HOH A 72 672 72 HOH HOH . 
D 4 HOH A 73 673 73 HOH HOH . 
D 4 HOH A 74 674 74 HOH HOH . 
D 4 HOH A 75 675 75 HOH HOH . 
D 4 HOH A 76 676 76 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 O OAF 3V5 . . . C 3 22.065 25.094 41.073 1 90.76 ? OAF 3V5 502 A 1 
HETATM 2 C CAS 3V5 . . . C 3 22.097 23.892 41.334 1 86.26 ? CAS 3V5 502 A 1 
HETATM 3 O OAH 3V5 . . . C 3 21.135 23.255 41.745 1 79.26 ? OAH 3V5 502 A 1 
HETATM 4 C CAX 3V5 . . . C 3 23.401 23.209 41.204 1 88.62 ? CAX 3V5 502 A 1 
HETATM 5 C CAW 3V5 . . . C 3 23.313 21.866 40.487 1 87.67 ? CAW 3V5 502 A 1 
HETATM 6 S SAQ 3V5 . . . C 3 24.447 21.939 39.13 1 106.7 ? SAQ 3V5 502 A 1 
HETATM 7 C CAK 3V5 . . . C 3 23.817 21.386 37.581 1 98.25 ? CAK 3V5 502 A 1 
HETATM 8 N NAN 3V5 . . . C 3 23.893 22.411 36.564 1 95.24 ? NAN 3V5 502 A 1 
HETATM 9 C CAJ 3V5 . . . C 3 24.654 23.634 36.739 1 94.28 ? CAJ 3V5 502 A 1 
HETATM 10 N NAB 3V5 . . . C 3 23.899 24.604 37.496 1 95.69 ? NAB 3V5 502 A 1 
HETATM 11 C CAM 3V5 . . . C 3 23.635 20.822 41.556 1 79.48 ? CAM 3V5 502 A 1 
HETATM 12 N NAO 3V5 . . . C 3 23.813 22.89 42.523 1 83.47 ? NAO 3V5 502 A 1 
HETATM 13 C CAV 3V5 . . . C 3 23.153 21.639 42.726 1 75.52 ? CAV 3V5 502 A 1 
HETATM 14 C CAY 3V5 . . . C 3 23.068 21.247 44.175 1 68.73 ? CAY 3V5 502 A 1 
HETATM 15 C CAR 3V5 . . . C 3 24.119 20.389 44.868 1 75.53 ? CAR 3V5 502 A 1 
HETATM 16 C CAA 3V5 . . . C 3 25.517 20.927 44.981 1 75.63 ? CAA 3V5 502 A 1 
HETATM 17 O OAE 3V5 . . . C 3 23.843 19.364 45.448 1 72.63 ? OAE 3V5 502 A 1 
HETATM 18 C CAT 3V5 . . . C 3 21.621 20.92 44.267 1 56.83 ? CAT 3V5 502 A 1 
HETATM 19 O OAG 3V5 . . . C 3 20.98 21.629 44.99 1 53.5 ? OAG 3V5 502 A 1 
#
_model_server_stats.io_time_ms              44 
_model_server_stats.parse_time_ms           9 
_model_server_stats.create_model_time_ms    7 
_model_server_stats.query_time_ms           339 
_model_server_stats.encode_time_ms          5 
_model_server_stats.element_count           19 
#