data_4QTN # _model_server_result.job_id gWkl5z4l-P5wHmIwY_gxmQ _model_server_result.datetime_utc '2024-11-24 01:15:26' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 4qtn # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"J","auth_seq_id":302}' # _entry.id 4QTN # _exptl.entry_id 4QTN _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 292.369 _entity.id 3 _entity.src_method man _entity.type non-polymer _entity.pdbx_description 'octyl beta-D-glucopyranoside' _entity.pdbx_number_of_molecules 4 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 4QTN _cell.length_a 93.32 _cell.length_b 112.93 _cell.length_c 120.37 _cell.Z_PDB 12 _cell.pdbx_unique_axis ? # _symmetry.entry_id 4QTN _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 21 21 21' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details trimeric _pdbx_struct_assembly.oligomeric_count 3 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 3 E N N ? 3 G N N ? 3 H N N ? 3 J N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order covale ? covale1 A C LEU 24 A LEU 24 1_555 A N MSE 25 A MSE 25 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.322 ? covale ? covale2 A C MSE 25 A MSE 25 1_555 A N PHE 26 A PHE 26 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.322 ? covale ? covale3 A C GLU 87 A GLU 87 1_555 A N MSE 88 A MSE 88 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.331 ? covale ? covale4 A C MSE 88 A MSE 88 1_555 A N MSE 89 A MSE 89 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.333 ? covale ? covale5 A C MSE 89 A MSE 89 1_555 A N LEU 90 A LEU 90 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.328 ? covale ? covale6 A C ALA 104 A ALA 104 1_555 A N MSE 105 A MSE 105 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.347 ? covale ? covale7 A C MSE 105 A MSE 105 1_555 A N TRP 106 A TRP 106 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.325 ? covale ? covale8 A C HIS 109 A HIS 109 1_555 A N MSE 110 A MSE 110 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.312 ? covale ? covale9 A C MSE 110 A MSE 110 1_555 A N ALA 111 A ALA 111 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.323 ? covale ? covale10 A C LEU 173 A LEU 173 1_555 A N MSE 174 A MSE 174 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.33 ? covale ? covale11 A C MSE 174 A MSE 174 1_555 A N ILE 175 A ILE 175 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.342 ? covale ? covale12 A C LEU 212 A LEU 212 1_555 A N MSE 213 A MSE 213 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.336 ? covale ? covale13 A C MSE 213 A MSE 213 1_555 A N TYR 214 A TYR 214 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.332 ? covale ? covale14 A C VAL 215 A VAL 215 1_555 A N MSE 216 A MSE 216 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.33 ? covale ? covale15 A C MSE 216 A MSE 216 1_555 A N TYR 217 A TYR 217 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.329 ? covale ? covale16 B C LEU 24 B LEU 24 1_555 B N MSE 25 B MSE 25 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.328 ? covale ? covale17 B C MSE 25 B MSE 25 1_555 B N PHE 26 B PHE 26 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.332 ? covale ? covale18 B C GLU 87 B GLU 87 1_555 B N MSE 88 B MSE 88 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.333 ? covale ? covale19 B C MSE 88 B MSE 88 1_555 B N MSE 89 B MSE 89 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.329 ? covale ? covale20 B C MSE 89 B MSE 89 1_555 B N LEU 90 B LEU 90 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.33 ? covale ? covale21 B C ALA 104 B ALA 104 1_555 B N MSE 105 B MSE 105 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.342 ? covale ? covale22 B C MSE 105 B MSE 105 1_555 B N TRP 106 B TRP 106 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.328 ? covale ? covale23 B C HIS 109 B HIS 109 1_555 B N MSE 110 B MSE 110 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.316 ? covale ? covale24 B C MSE 110 B MSE 110 1_555 B N ALA 111 B ALA 111 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.323 ? covale ? covale25 B C LEU 173 B LEU 173 1_555 B N MSE 174 B MSE 174 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.332 ? covale ? covale26 B C MSE 174 B MSE 174 1_555 B N ILE 175 B ILE 175 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.335 ? covale ? covale27 B C LEU 212 B LEU 212 1_555 B N MSE 213 B MSE 213 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.331 ? covale ? covale28 B C MSE 213 B MSE 213 1_555 B N TYR 214 B TYR 214 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.33 ? covale ? covale29 B C VAL 215 B VAL 215 1_555 B N MSE 216 B MSE 216 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.32 ? covale ? covale30 B C MSE 216 B MSE 216 1_555 B N TYR 217 B TYR 217 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.336 ? covale ? covale31 C C LEU 24 C LEU 24 1_555 C N MSE 25 C MSE 25 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.325 ? covale ? covale32 C C MSE 25 C MSE 25 1_555 C N PHE 26 C PHE 26 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.326 ? covale ? covale33 C C GLU 87 C GLU 87 1_555 C N MSE 88 C MSE 88 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.327 ? covale ? covale34 C C MSE 88 C MSE 88 1_555 C N MSE 89 C MSE 89 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.336 ? covale ? covale35 C C MSE 89 C MSE 89 1_555 C N LEU 90 C LEU 90 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.337 ? covale ? covale36 C C ALA 104 C ALA 104 1_555 C N MSE 105 C MSE 105 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.338 ? covale ? covale37 C C MSE 105 C MSE 105 1_555 C N TRP 106 C TRP 106 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.331 ? covale ? covale38 C C HIS 109 C HIS 109 1_555 C N MSE 110 C MSE 110 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.329 ? covale ? covale39 C C MSE 110 C MSE 110 1_555 C N ALA 111 C ALA 111 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.335 ? covale ? covale40 C C LEU 173 C LEU 173 1_555 C N MSE 174 C MSE 174 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.336 ? covale ? covale41 C C MSE 174 C MSE 174 1_555 C N ILE 175 C ILE 175 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.331 ? covale ? covale42 C C LEU 212 C LEU 212 1_555 C N MSE 213 C MSE 213 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.331 ? covale ? covale43 C C MSE 213 C MSE 213 1_555 C N TYR 214 C TYR 214 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.336 ? covale ? covale44 C C VAL 215 C VAL 215 1_555 C N MSE 216 C MSE 216 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.333 ? covale ? covale45 C C MSE 216 C MSE 216 1_555 C N TYR 217 C TYR 217 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.33 ? # _chem_comp.formula 'C14 H28 O6' _chem_comp.formula_weight 292.369 _chem_comp.id BOG _chem_comp.mon_nstd_flag n _chem_comp.name 'octyl beta-D-glucopyranoside' _chem_comp.type d-saccharide _chem_comp.pdbx_synonyms 'Beta-Octylglucoside;octyl beta-D-glucoside;octyl D-glucoside;octyl glucoside' # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 O1 BOG sing 70 n n C1 C2 BOG sing 71 n n C1 O5 BOG sing 72 n n C1 H1 BOG sing 73 n n O1 C1' BOG sing 74 n n C2 O2 BOG sing 75 n n C2 C3 BOG sing 76 n n C2 H2 BOG sing 77 n n O2 HO2 BOG sing 78 n n C3 O3 BOG sing 79 n n C3 C4 BOG sing 80 n n C3 H3 BOG sing 81 n n O3 HO3 BOG sing 82 n n C4 O4 BOG sing 83 n n C4 C5 BOG sing 84 n n C4 H4 BOG sing 85 n n O4 HO4 BOG sing 86 n n C5 O5 BOG sing 87 n n C5 C6 BOG sing 88 n n C5 H5 BOG sing 89 n n C6 O6 BOG sing 90 n n C6 H61 BOG sing 91 n n C6 H62 BOG sing 92 n n O6 HO6 BOG sing 93 n n C1' C2' BOG sing 94 n n C1' "H1'1" BOG sing 95 n n C1' "H1'2" BOG sing 96 n n C2' C3' BOG sing 97 n n C2' "H2'1" BOG sing 98 n n C2' "H2'2" BOG sing 99 n n C3' C4' BOG sing 100 n n C3' "H3'1" BOG sing 101 n n C3' "H3'2" BOG sing 102 n n C4' C5' BOG sing 103 n n C4' "H4'1" BOG sing 104 n n C4' "H4'2" BOG sing 105 n n C5' C6' BOG sing 106 n n C5' "H5'1" BOG sing 107 n n C5' "H5'2" BOG sing 108 n n C6' C7' BOG sing 109 n n C6' "H6'1" BOG sing 110 n n C6' "H6'2" BOG sing 111 n n C7' C8' BOG sing 112 n n C7' "H7'1" BOG sing 113 n n C7' "H7'2" BOG sing 114 n n C8' "H8'1" BOG sing 115 n n C8' "H8'2" BOG sing 116 n n C8' "H8'3" BOG sing 117 n n # _pdbx_chem_comp_identifier.comp_id BOG _pdbx_chem_comp_identifier.identifier b-octylglucoside _pdbx_chem_comp_identifier.type 'IUPAC CARBOHYDRATE SYMBOL' _pdbx_chem_comp_identifier.program PDB-CARE _pdbx_chem_comp_identifier.program_version 1 # _atom_sites.entry_id 4QTN _atom_sites.fract_transf_matrix[1][1] 0.010716 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.008855 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.008308 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code D 2 NNR A 1 301 1 NNR NNR . E 3 BOG A 1 302 1 BOG BOG . F 2 NNR B 1 301 2 NNR NNR . G 3 BOG B 1 302 2 BOG BOG . H 3 BOG B 1 303 3 BOG BOG . I 2 NNR C 1 301 3 NNR NNR . J 3 BOG C 1 302 4 BOG BOG . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 BOG . . . J 3 49.028 50.885 67.509 1 124.67 ? C1 BOG 302 C 1 HETATM 2 O O1 BOG . . . J 3 49.372 50.887 66.168 1 107.69 ? O1 BOG 302 C 1 HETATM 3 C C2 BOG . . . J 3 50.25 51.233 68.348 1 141.13 ? C2 BOG 302 C 1 HETATM 4 O O2 BOG . . . J 3 51.321 50.229 68.18 1 129 ? O2 BOG 302 C 1 HETATM 5 C C3 BOG . . . J 3 49.897 51.299 69.791 1 153.92 ? C3 BOG 302 C 1 HETATM 6 O O3 BOG . . . J 3 51.112 51.615 70.543 1 158.22 ? O3 BOG 302 C 1 HETATM 7 C C4 BOG . . . J 3 48.836 52.312 70.079 1 151.21 ? C4 BOG 302 C 1 HETATM 8 O O4 BOG . . . J 3 48.387 52.165 71.439 1 136.47 ? O4 BOG 302 C 1 HETATM 9 C C5 BOG . . . J 3 47.619 52.26 69.126 1 141.55 ? C5 BOG 302 C 1 HETATM 10 O O5 BOG . . . J 3 47.914 51.871 67.707 1 128.76 ? O5 BOG 302 C 1 HETATM 11 C C6 BOG . . . J 3 47.012 53.618 69.109 1 142.32 ? C6 BOG 302 C 1 HETATM 12 O O6 BOG . . . J 3 45.627 53.541 68.786 1 145.08 ? O6 BOG 302 C 1 HETATM 13 C C1' BOG . . . J 3 49.546 49.572 65.578 1 100.23 ? C1' BOG 302 C 1 HETATM 14 C C2' BOG . . . J 3 50.44 49.732 64.306 1 94.48 ? C2' BOG 302 C 1 HETATM 15 C C3' BOG . . . J 3 50.572 48.411 63.589 1 89.41 ? C3' BOG 302 C 1 HETATM 16 C C4' BOG . . . J 3 51.317 48.661 62.241 1 87.12 ? C4' BOG 302 C 1 HETATM 17 C C5' BOG . . . J 3 51.543 47.317 61.484 1 81.58 ? C5' BOG 302 C 1 HETATM 18 C C6' BOG . . . J 3 52.463 46.39 62.318 1 101.14 ? C6' BOG 302 C 1 HETATM 19 C C7' BOG . . . J 3 51.878 44.957 62.377 1 113.08 ? C7' BOG 302 C 1 HETATM 20 C C8' BOG . . . J 3 52.547 44.035 61.298 1 103.31 ? C8' BOG 302 C 1 # _model_server_stats.io_time_ms 17 _model_server_stats.parse_time_ms 10 _model_server_stats.create_model_time_ms 24 _model_server_stats.query_time_ms 290 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 20 #