data_4QTU # _model_server_result.job_id IV0vWDKZpY5XzViTuSgSbg _model_server_result.datetime_utc '2024-11-17 08:44:36' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 4qtu # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"S","auth_seq_id":308}' # _entry.id 4QTU # _exptl.entry_id 4QTU _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 62.068 _entity.id 4 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 1,2-ETHANEDIOL _entity.pdbx_number_of_molecules 19 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 94.55 _cell.angle_gamma 90 _cell.entry_id 4QTU _cell.length_a 75.472 _cell.length_b 53.733 _cell.length_c 85.205 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 4QTU _symmetry.cell_setting ? _symmetry.Int_Tables_number 4 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1 21 1' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id PISA dimeric 2 author_and_software_defined_assembly 1 PISA dimeric 2 author_and_software_defined_assembly 2 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,B,E,F,G,H,I,J,K,L,M,N,O,P,Q,R,S,T,U,V,BA,CA 1 1 C,D,W,X,Y,Z,AA,DA,EA 2 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 4 F N N ? 4 G N N ? 4 H N N ? 4 I N N ? 4 J N N ? 4 K N N ? 4 M N N ? 4 N N N ? 4 O N N ? 4 P N N ? 4 Q N N ? 4 R N N ? 4 S N N ? 4 T N N ? 4 U N N ? 4 V N N ? 4 X N N ? 4 Y N N ? 4 AA N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order covale ? covale1 B C LEU 123 B LEU 123 1_555 B N CSO 124 B CSO 124 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.334 ? covale ? covale2 B C CSO 124 B CSO 124 1_555 B N ASN 125 B ASN 125 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.328 ? covale ? covale3 D C LEU 123 D LEU 123 1_555 D N CSO 124 D CSO 124 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.331 ? covale ? covale4 D C CSO 124 D CSO 124 1_555 D N ASN 125 D ASN 125 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.329 ? metalc ? metalc1 A SG CYS 11 A CYS 11 1_555 E ZN ZN . A ZN 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.43 ? metalc ? metalc2 A SG CYS 16 A CYS 16 1_555 E ZN ZN . A ZN 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.274 ? metalc ? metalc3 A SG CYS 112 A CYS 112 1_555 E ZN ZN . A ZN 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.263 ? metalc ? metalc4 A SG CYS 115 A CYS 115 1_555 E ZN ZN . A ZN 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.353 ? metalc ? metalc5 C SG CYS 11 C CYS 11 1_555 W ZN ZN . C ZN 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.35 ? metalc ? metalc6 C SG CYS 16 C CYS 16 1_555 W ZN ZN . C ZN 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.281 ? metalc ? metalc7 C SG CYS 112 C CYS 112 1_555 W ZN ZN . C ZN 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.408 ? metalc ? metalc8 C SG CYS 115 C CYS 115 1_555 W ZN ZN . C ZN 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.416 ? # _chem_comp.formula 'C2 H6 O2' _chem_comp.formula_weight 62.068 _chem_comp.id EDO _chem_comp.mon_nstd_flag . _chem_comp.name 1,2-ETHANEDIOL _chem_comp.type non-polymer _chem_comp.pdbx_synonyms 'ETHYLENE GLYCOL' # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 O1 EDO sing 97 n n C1 C2 EDO sing 98 n n C1 H11 EDO sing 99 n n C1 H12 EDO sing 100 n n O1 HO1 EDO sing 101 n n C2 O2 EDO sing 102 n n C2 H21 EDO sing 103 n n C2 H22 EDO sing 104 n n O2 HO2 EDO sing 105 n n # _atom_sites.entry_id 4QTU _atom_sites.fract_transf_matrix[1][1] 0.01325 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.001055 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.018611 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.011774 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code E 3 ZN A 1 201 1138 ZN ZN . F 4 EDO A 1 202 9 EDO EDO . G 4 EDO A 1 203 1 EDO EDO . H 4 EDO A 1 204 1 EDO EDO . I 4 EDO A 1 205 1 EDO EDO . J 4 EDO A 1 206 1 EDO EDO . K 4 EDO A 1 207 1 EDO EDO . L 5 SAM B 1 301 300 SAM SAM . M 4 EDO B 1 302 1 EDO EDO . N 4 EDO B 1 303 3 EDO EDO . O 4 EDO B 1 304 5 EDO EDO . P 4 EDO B 1 305 6 EDO EDO . Q 4 EDO B 1 306 8 EDO EDO . R 4 EDO B 1 307 1 EDO EDO . S 4 EDO B 1 308 1 EDO EDO . T 4 EDO B 1 309 1 EDO EDO . U 4 EDO B 1 310 1 EDO EDO . V 4 EDO B 1 311 2 EDO EDO . W 3 ZN C 1 201 1138 ZN ZN . X 4 EDO C 1 202 4 EDO EDO . Y 4 EDO C 1 203 1 EDO EDO . Z 5 SAM D 1 301 400 SAM SAM . AA 4 EDO D 1 302 2 EDO EDO . BA 6 HOH A 1 301 2 HOH HOH . BA 6 HOH A 2 302 10 HOH HOH . BA 6 HOH A 3 303 14 HOH HOH . BA 6 HOH A 4 304 17 HOH HOH . BA 6 HOH A 5 305 20 HOH HOH . BA 6 HOH A 6 306 26 HOH HOH . BA 6 HOH A 7 307 33 HOH HOH . BA 6 HOH A 8 308 41 HOH HOH . BA 6 HOH A 9 309 43 HOH HOH . BA 6 HOH A 10 310 49 HOH HOH . BA 6 HOH A 11 311 53 HOH HOH . BA 6 HOH A 12 312 55 HOH HOH . BA 6 HOH A 13 313 57 HOH HOH . BA 6 HOH A 14 314 59 HOH HOH . BA 6 HOH A 15 315 62 HOH HOH . BA 6 HOH A 16 316 63 HOH HOH . BA 6 HOH A 17 317 64 HOH HOH . BA 6 HOH A 18 318 65 HOH HOH . BA 6 HOH A 19 319 70 HOH HOH . BA 6 HOH A 20 320 71 HOH HOH . BA 6 HOH A 21 321 74 HOH HOH . BA 6 HOH A 22 322 75 HOH HOH . BA 6 HOH A 23 323 77 HOH HOH . BA 6 HOH A 24 324 80 HOH HOH . BA 6 HOH A 25 325 81 HOH HOH . BA 6 HOH A 26 326 83 HOH HOH . BA 6 HOH A 27 327 84 HOH HOH . BA 6 HOH A 28 328 89 HOH HOH . BA 6 HOH A 29 329 90 HOH HOH . BA 6 HOH A 30 330 91 HOH HOH . BA 6 HOH A 31 331 92 HOH HOH . BA 6 HOH A 32 332 97 HOH HOH . BA 6 HOH A 33 333 98 HOH HOH . BA 6 HOH A 34 334 101 HOH HOH . BA 6 HOH A 35 335 106 HOH HOH . BA 6 HOH A 36 336 115 HOH HOH . BA 6 HOH A 37 337 119 HOH HOH . BA 6 HOH A 38 338 126 HOH HOH . BA 6 HOH A 39 339 131 HOH HOH . BA 6 HOH A 40 340 137 HOH HOH . BA 6 HOH A 41 341 142 HOH HOH . BA 6 HOH A 42 342 147 HOH HOH . BA 6 HOH A 43 343 153 HOH HOH . BA 6 HOH A 44 344 160 HOH HOH . BA 6 HOH A 45 345 163 HOH HOH . BA 6 HOH A 46 346 170 HOH HOH . BA 6 HOH A 47 347 171 HOH HOH . BA 6 HOH A 48 348 177 HOH HOH . BA 6 HOH A 49 349 184 HOH HOH . BA 6 HOH A 50 350 189 HOH HOH . BA 6 HOH A 51 351 192 HOH HOH . BA 6 HOH A 52 352 195 HOH HOH . CA 6 HOH B 1 401 1 HOH HOH . CA 6 HOH B 2 402 4 HOH HOH . CA 6 HOH B 3 403 5 HOH HOH . CA 6 HOH B 4 404 7 HOH HOH . CA 6 HOH B 5 405 9 HOH HOH . CA 6 HOH B 6 406 11 HOH HOH . CA 6 HOH B 7 407 13 HOH HOH . CA 6 HOH B 8 408 16 HOH HOH . CA 6 HOH B 9 409 18 HOH HOH . CA 6 HOH B 10 410 19 HOH HOH . CA 6 HOH B 11 411 29 HOH HOH . CA 6 HOH B 12 412 30 HOH HOH . CA 6 HOH B 13 413 31 HOH HOH . CA 6 HOH B 14 414 32 HOH HOH . CA 6 HOH B 15 415 34 HOH HOH . CA 6 HOH B 16 416 38 HOH HOH . CA 6 HOH B 17 417 39 HOH HOH . CA 6 HOH B 18 418 40 HOH HOH . CA 6 HOH B 19 419 42 HOH HOH . CA 6 HOH B 20 420 44 HOH HOH . CA 6 HOH B 21 421 47 HOH HOH . CA 6 HOH B 22 422 48 HOH HOH . CA 6 HOH B 23 423 50 HOH HOH . CA 6 HOH B 24 424 51 HOH HOH . CA 6 HOH B 25 425 52 HOH HOH . CA 6 HOH B 26 426 58 HOH HOH . CA 6 HOH B 27 427 60 HOH HOH . CA 6 HOH B 28 428 67 HOH HOH . CA 6 HOH B 29 429 72 HOH HOH . CA 6 HOH B 30 430 76 HOH HOH . CA 6 HOH B 31 431 78 HOH HOH . CA 6 HOH B 32 432 82 HOH HOH . CA 6 HOH B 33 433 94 HOH HOH . CA 6 HOH B 34 434 95 HOH HOH . CA 6 HOH B 35 435 100 HOH HOH . CA 6 HOH B 36 436 102 HOH HOH . CA 6 HOH B 37 437 104 HOH HOH . CA 6 HOH B 38 438 107 HOH HOH . CA 6 HOH B 39 439 108 HOH HOH . CA 6 HOH B 40 440 109 HOH HOH . CA 6 HOH B 41 441 111 HOH HOH . CA 6 HOH B 42 442 113 HOH HOH . CA 6 HOH B 43 443 114 HOH HOH . CA 6 HOH B 44 444 117 HOH HOH . CA 6 HOH B 45 445 121 HOH HOH . CA 6 HOH B 46 446 124 HOH HOH . CA 6 HOH B 47 447 125 HOH HOH . CA 6 HOH B 48 448 128 HOH HOH . CA 6 HOH B 49 449 129 HOH HOH . CA 6 HOH B 50 450 133 HOH HOH . CA 6 HOH B 51 451 140 HOH HOH . CA 6 HOH B 52 452 141 HOH HOH . CA 6 HOH B 53 453 143 HOH HOH . CA 6 HOH B 54 454 148 HOH HOH . CA 6 HOH B 55 455 150 HOH HOH . CA 6 HOH B 56 456 151 HOH HOH . CA 6 HOH B 57 457 154 HOH HOH . CA 6 HOH B 58 458 155 HOH HOH . CA 6 HOH B 59 459 158 HOH HOH . CA 6 HOH B 60 460 159 HOH HOH . CA 6 HOH B 61 461 176 HOH HOH . CA 6 HOH B 62 462 182 HOH HOH . CA 6 HOH B 63 463 183 HOH HOH . CA 6 HOH B 64 464 185 HOH HOH . CA 6 HOH B 65 465 188 HOH HOH . CA 6 HOH B 66 466 190 HOH HOH . CA 6 HOH B 67 467 191 HOH HOH . CA 6 HOH B 68 468 193 HOH HOH . CA 6 HOH B 69 469 194 HOH HOH . DA 6 HOH C 1 301 6 HOH HOH . DA 6 HOH C 2 302 21 HOH HOH . DA 6 HOH C 3 303 22 HOH HOH . DA 6 HOH C 4 304 24 HOH HOH . DA 6 HOH C 5 305 25 HOH HOH . DA 6 HOH C 6 306 37 HOH HOH . DA 6 HOH C 7 307 56 HOH HOH . DA 6 HOH C 8 308 73 HOH HOH . DA 6 HOH C 9 309 85 HOH HOH . DA 6 HOH C 10 310 86 HOH HOH . DA 6 HOH C 11 311 87 HOH HOH . DA 6 HOH C 12 312 105 HOH HOH . DA 6 HOH C 13 313 112 HOH HOH . DA 6 HOH C 14 314 123 HOH HOH . DA 6 HOH C 15 315 130 HOH HOH . DA 6 HOH C 16 316 132 HOH HOH . DA 6 HOH C 17 317 135 HOH HOH . DA 6 HOH C 18 318 136 HOH HOH . DA 6 HOH C 19 319 144 HOH HOH . DA 6 HOH C 20 320 162 HOH HOH . DA 6 HOH C 21 321 165 HOH HOH . DA 6 HOH C 22 322 168 HOH HOH . DA 6 HOH C 23 323 180 HOH HOH . EA 6 HOH D 1 401 8 HOH HOH . EA 6 HOH D 2 402 12 HOH HOH . EA 6 HOH D 3 403 15 HOH HOH . EA 6 HOH D 4 404 23 HOH HOH . EA 6 HOH D 5 405 27 HOH HOH . EA 6 HOH D 6 406 28 HOH HOH . EA 6 HOH D 7 407 36 HOH HOH . EA 6 HOH D 8 408 45 HOH HOH . EA 6 HOH D 9 409 46 HOH HOH . EA 6 HOH D 10 410 61 HOH HOH . EA 6 HOH D 11 411 66 HOH HOH . EA 6 HOH D 12 412 68 HOH HOH . EA 6 HOH D 13 413 79 HOH HOH . EA 6 HOH D 14 414 96 HOH HOH . EA 6 HOH D 15 415 103 HOH HOH . EA 6 HOH D 16 416 110 HOH HOH . EA 6 HOH D 17 417 116 HOH HOH . EA 6 HOH D 18 418 118 HOH HOH . EA 6 HOH D 19 419 120 HOH HOH . EA 6 HOH D 20 420 122 HOH HOH . EA 6 HOH D 21 421 127 HOH HOH . EA 6 HOH D 22 422 134 HOH HOH . EA 6 HOH D 23 423 138 HOH HOH . EA 6 HOH D 24 424 139 HOH HOH . EA 6 HOH D 25 425 157 HOH HOH . EA 6 HOH D 26 426 166 HOH HOH . EA 6 HOH D 27 427 167 HOH HOH . EA 6 HOH D 28 428 169 HOH HOH . EA 6 HOH D 29 429 186 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 EDO . . . S 4 27.261 7.313 40.243 1 38.17 ? C1 EDO 308 B 1 HETATM 2 O O1 EDO . . . S 4 27.684 7.518 41.603 1 45.53 ? O1 EDO 308 B 1 HETATM 3 C C2 EDO . . . S 4 26.022 8.169 39.989 1 32.89 ? C2 EDO 308 B 1 HETATM 4 O O2 EDO . . . S 4 26.314 9.522 40.364 1 34.84 ? O2 EDO 308 B 1 # _model_server_stats.io_time_ms 10 _model_server_stats.parse_time_ms 14 _model_server_stats.create_model_time_ms 11 _model_server_stats.query_time_ms 227 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 4 #