data_4QU2
#
_model_server_result.job_id            sOAMK3B7Zm_oQsiqilWIEQ 
_model_server_result.datetime_utc      '2024-12-26 13:01:10' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          4qu2 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"C","auth_seq_id":501}' 
#
_entry.id    4QU2 
#
_exptl.entry_id    4QU2 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              58.693 
_entity.id                          2 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            'NICKEL (II) ION' 
_entity.pdbx_number_of_molecules    2 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            4QU2 
_cell.length_a            53.535 
_cell.length_b            59.516 
_cell.length_c            199.583 
_cell.Z_PDB               8 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 4QU2 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        19 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 21 21 21' 
#
loop_
_pdbx_struct_assembly.method_details
_pdbx_struct_assembly.oligomeric_details
_pdbx_struct_assembly.oligomeric_count
_pdbx_struct_assembly.details
_pdbx_struct_assembly.id
? monomeric 1 author_defined_assembly 1 
? monomeric 1 author_defined_assembly 2 
PISA dimeric 2 software_defined_assembly 3 
#
loop_
_pdbx_struct_assembly_gen.asym_id_list
_pdbx_struct_assembly_gen.assembly_id
_pdbx_struct_assembly_gen.oper_expression
A,C,D,G 1 1 
B,E,F,H 2 1 
A,B,C,D,E,F,G,H 3 1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 2 C N N 
? 2 E N N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
metalc ? metalc1 A NE2 HIS 180 A HIS 178 1_555 C NI NI . A NI 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.529 ? 
metalc ? metalc2 A NE2 HIS 279 A HIS 277 1_555 C NI NI . A NI 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.616 ? 
metalc ? metalc3 C NI NI . A NI 501 1_555 D O5 AKG . A AKG 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.496 ? 
metalc ? metalc4 C NI NI . A NI 501 1_555 D O2 AKG . A AKG 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.741 ? 
metalc ? metalc5 B NE2 HIS 180 B HIS 178 1_555 E NI NI . B NI 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.518 ? 
metalc ? metalc6 B OD2 ASP 182 B ASP 180 1_555 E NI NI . B NI 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.379 ? 
metalc ? metalc7 B NE2 HIS 279 B HIS 277 1_555 E NI NI . B NI 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.477 ? 
metalc ? metalc8 E NI NI . B NI 501 1_555 F O5 AKG . B AKG 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.425 ? 
metalc ? metalc9 E NI NI . B NI 501 1_555 F O2 AKG . B AKG 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.605 ? 
#
_chem_comp.formula           'Ni 2' 
_chem_comp.formula_weight    58.693 
_chem_comp.id                NI 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              'NICKEL (II) ION' 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
_atom_sites.entry_id                     4QU2 
_atom_sites.fract_transf_matrix[1][1]    0.018679 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.016802 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.00501 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
C 2 NI A 1 501 501 NI NI . 
D 3 AKG A 1 502 502 AKG AKG . 
E 2 NI B 1 501 501 NI NI . 
F 3 AKG B 1 502 502 AKG AKG . 
G 4 HOH A 1 601 1 HOH HOH . 
G 4 HOH A 2 602 4 HOH HOH . 
G 4 HOH A 3 603 6 HOH HOH . 
G 4 HOH A 4 604 8 HOH HOH . 
G 4 HOH A 5 605 11 HOH HOH . 
G 4 HOH A 6 606 14 HOH HOH . 
G 4 HOH A 7 607 17 HOH HOH . 
G 4 HOH A 8 608 20 HOH HOH . 
G 4 HOH A 9 609 22 HOH HOH . 
G 4 HOH A 10 610 23 HOH HOH . 
G 4 HOH A 11 611 24 HOH HOH . 
G 4 HOH A 12 612 26 HOH HOH . 
G 4 HOH A 13 613 27 HOH HOH . 
G 4 HOH A 14 614 28 HOH HOH . 
G 4 HOH A 15 615 30 HOH HOH . 
G 4 HOH A 16 616 31 HOH HOH . 
G 4 HOH A 17 617 35 HOH HOH . 
G 4 HOH A 18 618 43 HOH HOH . 
G 4 HOH A 19 619 45 HOH HOH . 
G 4 HOH A 20 620 47 HOH HOH . 
G 4 HOH A 21 621 48 HOH HOH . 
G 4 HOH A 22 622 50 HOH HOH . 
G 4 HOH A 23 623 60 HOH HOH . 
G 4 HOH A 24 624 62 HOH HOH . 
G 4 HOH A 25 625 63 HOH HOH . 
G 4 HOH A 26 626 67 HOH HOH . 
G 4 HOH A 27 627 73 HOH HOH . 
G 4 HOH A 28 628 75 HOH HOH . 
G 4 HOH A 29 629 76 HOH HOH . 
G 4 HOH A 30 630 79 HOH HOH . 
G 4 HOH A 31 631 80 HOH HOH . 
H 4 HOH B 1 601 2 HOH HOH . 
H 4 HOH B 2 602 3 HOH HOH . 
H 4 HOH B 3 603 5 HOH HOH . 
H 4 HOH B 4 604 7 HOH HOH . 
H 4 HOH B 5 605 9 HOH HOH . 
H 4 HOH B 6 606 10 HOH HOH . 
H 4 HOH B 7 607 12 HOH HOH . 
H 4 HOH B 8 608 13 HOH HOH . 
H 4 HOH B 9 609 15 HOH HOH . 
H 4 HOH B 10 610 16 HOH HOH . 
H 4 HOH B 11 611 18 HOH HOH . 
H 4 HOH B 12 612 19 HOH HOH . 
H 4 HOH B 13 613 21 HOH HOH . 
H 4 HOH B 14 614 25 HOH HOH . 
H 4 HOH B 15 615 29 HOH HOH . 
H 4 HOH B 16 616 32 HOH HOH . 
H 4 HOH B 17 617 33 HOH HOH . 
H 4 HOH B 18 618 34 HOH HOH . 
H 4 HOH B 19 619 36 HOH HOH . 
H 4 HOH B 20 620 37 HOH HOH . 
H 4 HOH B 21 621 38 HOH HOH . 
H 4 HOH B 22 622 39 HOH HOH . 
H 4 HOH B 23 623 40 HOH HOH . 
H 4 HOH B 24 624 41 HOH HOH . 
H 4 HOH B 25 625 42 HOH HOH . 
H 4 HOH B 26 626 44 HOH HOH . 
H 4 HOH B 27 627 46 HOH HOH . 
H 4 HOH B 28 628 49 HOH HOH . 
H 4 HOH B 29 629 51 HOH HOH . 
H 4 HOH B 30 630 52 HOH HOH . 
H 4 HOH B 31 631 53 HOH HOH . 
H 4 HOH B 32 632 54 HOH HOH . 
H 4 HOH B 33 633 55 HOH HOH . 
H 4 HOH B 34 634 56 HOH HOH . 
H 4 HOH B 35 635 57 HOH HOH . 
H 4 HOH B 36 636 58 HOH HOH . 
H 4 HOH B 37 637 59 HOH HOH . 
H 4 HOH B 38 638 61 HOH HOH . 
H 4 HOH B 39 639 64 HOH HOH . 
H 4 HOH B 40 640 65 HOH HOH . 
H 4 HOH B 41 641 66 HOH HOH . 
H 4 HOH B 42 642 68 HOH HOH . 
H 4 HOH B 43 643 69 HOH HOH . 
H 4 HOH B 44 644 70 HOH HOH . 
H 4 HOH B 45 645 71 HOH HOH . 
H 4 HOH B 46 646 72 HOH HOH . 
H 4 HOH B 47 647 74 HOH HOH . 
H 4 HOH B 48 648 77 HOH HOH . 
H 4 HOH B 49 649 78 HOH HOH . 
H 4 HOH B 50 650 81 HOH HOH . 
H 4 HOH B 51 651 82 HOH HOH . 
H 4 HOH B 52 652 83 HOH HOH . 
H 4 HOH B 53 653 84 HOH HOH . 
H 4 HOH B 54 654 85 HOH HOH . 
H 4 HOH B 55 655 86 HOH HOH . 
H 4 HOH B 56 656 87 HOH HOH . 
H 4 HOH B 57 657 88 HOH HOH . 
H 4 HOH B 58 658 89 HOH HOH . 
#
_atom_site.group_PDB             HETATM 
_atom_site.id                    1 
_atom_site.type_symbol           NI 
_atom_site.label_atom_id         NI 
_atom_site.label_comp_id         NI 
_atom_site.label_seq_id          . 
_atom_site.label_alt_id          . 
_atom_site.pdbx_PDB_ins_code     . 
_atom_site.label_asym_id         C 
_atom_site.label_entity_id       2 
_atom_site.Cartn_x               7.093 
_atom_site.Cartn_y               -1.66 
_atom_site.Cartn_z               -4.663 
_atom_site.occupancy             1 
_atom_site.B_iso_or_equiv        23.18 
_atom_site.pdbx_formal_charge    ? 
_atom_site.auth_atom_id          NI 
_atom_site.auth_comp_id          NI 
_atom_site.auth_seq_id           501 
_atom_site.auth_asym_id          A 
_atom_site.pdbx_PDB_model_num    1 
#
_model_server_stats.io_time_ms              19 
_model_server_stats.parse_time_ms           19 
_model_server_stats.create_model_time_ms    7 
_model_server_stats.query_time_ms           426 
_model_server_stats.encode_time_ms          5 
_model_server_stats.element_count           1 
#