data_4QU2 # _model_server_result.job_id bcbwSNozAILbuUQ7uU1UzA _model_server_result.datetime_utc '2024-12-03 03:04:01' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 4qu2 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"D","auth_seq_id":502}' # _entry.id 4QU2 # _exptl.entry_id 4QU2 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 146.098 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description '2-OXOGLUTARIC ACID' _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 4QU2 _cell.length_a 53.535 _cell.length_b 59.516 _cell.length_c 199.583 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 4QU2 _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 21 21 21' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id ? monomeric 1 author_defined_assembly 1 ? monomeric 1 author_defined_assembly 2 PISA dimeric 2 software_defined_assembly 3 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,C,D,G 1 1 B,E,F,H 2 1 A,B,C,D,E,F,G,H 3 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 3 D N N ? 3 F N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A NE2 HIS 180 A HIS 178 1_555 C NI NI . A NI 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.529 ? metalc ? metalc2 A NE2 HIS 279 A HIS 277 1_555 C NI NI . A NI 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.616 ? metalc ? metalc3 C NI NI . A NI 501 1_555 D O5 AKG . A AKG 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.496 ? metalc ? metalc4 C NI NI . A NI 501 1_555 D O2 AKG . A AKG 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.741 ? metalc ? metalc5 B NE2 HIS 180 B HIS 178 1_555 E NI NI . B NI 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.518 ? metalc ? metalc6 B OD2 ASP 182 B ASP 180 1_555 E NI NI . B NI 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.379 ? metalc ? metalc7 B NE2 HIS 279 B HIS 277 1_555 E NI NI . B NI 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.477 ? metalc ? metalc8 E NI NI . B NI 501 1_555 F O5 AKG . B AKG 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.425 ? metalc ? metalc9 E NI NI . B NI 501 1_555 F O2 AKG . B AKG 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.605 ? # _chem_comp.formula 'C5 H6 O5' _chem_comp.formula_weight 146.098 _chem_comp.id AKG _chem_comp.mon_nstd_flag . _chem_comp.name '2-OXOGLUTARIC ACID' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 O1 AKG doub 1 n n C1 O2 AKG sing 2 n n C1 C2 AKG sing 3 n n O2 HO2 AKG sing 4 n n C2 O5 AKG doub 5 n n C2 C3 AKG sing 6 n n C3 C4 AKG sing 7 n n C3 H31 AKG sing 8 n n C3 H32 AKG sing 9 n n C4 C5 AKG sing 10 n n C4 H41 AKG sing 11 n n C4 H42 AKG sing 12 n n C5 O3 AKG doub 13 n n C5 O4 AKG sing 14 n n O4 HO4 AKG sing 15 n n # _atom_sites.entry_id 4QU2 _atom_sites.fract_transf_matrix[1][1] 0.018679 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.016802 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.00501 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 NI A 1 501 501 NI NI . D 3 AKG A 1 502 502 AKG AKG . E 2 NI B 1 501 501 NI NI . F 3 AKG B 1 502 502 AKG AKG . G 4 HOH A 1 601 1 HOH HOH . G 4 HOH A 2 602 4 HOH HOH . G 4 HOH A 3 603 6 HOH HOH . G 4 HOH A 4 604 8 HOH HOH . G 4 HOH A 5 605 11 HOH HOH . G 4 HOH A 6 606 14 HOH HOH . G 4 HOH A 7 607 17 HOH HOH . G 4 HOH A 8 608 20 HOH HOH . G 4 HOH A 9 609 22 HOH HOH . G 4 HOH A 10 610 23 HOH HOH . G 4 HOH A 11 611 24 HOH HOH . G 4 HOH A 12 612 26 HOH HOH . G 4 HOH A 13 613 27 HOH HOH . G 4 HOH A 14 614 28 HOH HOH . G 4 HOH A 15 615 30 HOH HOH . G 4 HOH A 16 616 31 HOH HOH . G 4 HOH A 17 617 35 HOH HOH . G 4 HOH A 18 618 43 HOH HOH . G 4 HOH A 19 619 45 HOH HOH . G 4 HOH A 20 620 47 HOH HOH . G 4 HOH A 21 621 48 HOH HOH . G 4 HOH A 22 622 50 HOH HOH . G 4 HOH A 23 623 60 HOH HOH . G 4 HOH A 24 624 62 HOH HOH . G 4 HOH A 25 625 63 HOH HOH . G 4 HOH A 26 626 67 HOH HOH . G 4 HOH A 27 627 73 HOH HOH . G 4 HOH A 28 628 75 HOH HOH . G 4 HOH A 29 629 76 HOH HOH . G 4 HOH A 30 630 79 HOH HOH . G 4 HOH A 31 631 80 HOH HOH . H 4 HOH B 1 601 2 HOH HOH . H 4 HOH B 2 602 3 HOH HOH . H 4 HOH B 3 603 5 HOH HOH . H 4 HOH B 4 604 7 HOH HOH . H 4 HOH B 5 605 9 HOH HOH . H 4 HOH B 6 606 10 HOH HOH . H 4 HOH B 7 607 12 HOH HOH . H 4 HOH B 8 608 13 HOH HOH . H 4 HOH B 9 609 15 HOH HOH . H 4 HOH B 10 610 16 HOH HOH . H 4 HOH B 11 611 18 HOH HOH . H 4 HOH B 12 612 19 HOH HOH . H 4 HOH B 13 613 21 HOH HOH . H 4 HOH B 14 614 25 HOH HOH . H 4 HOH B 15 615 29 HOH HOH . H 4 HOH B 16 616 32 HOH HOH . H 4 HOH B 17 617 33 HOH HOH . H 4 HOH B 18 618 34 HOH HOH . H 4 HOH B 19 619 36 HOH HOH . H 4 HOH B 20 620 37 HOH HOH . H 4 HOH B 21 621 38 HOH HOH . H 4 HOH B 22 622 39 HOH HOH . H 4 HOH B 23 623 40 HOH HOH . H 4 HOH B 24 624 41 HOH HOH . H 4 HOH B 25 625 42 HOH HOH . H 4 HOH B 26 626 44 HOH HOH . H 4 HOH B 27 627 46 HOH HOH . H 4 HOH B 28 628 49 HOH HOH . H 4 HOH B 29 629 51 HOH HOH . H 4 HOH B 30 630 52 HOH HOH . H 4 HOH B 31 631 53 HOH HOH . H 4 HOH B 32 632 54 HOH HOH . H 4 HOH B 33 633 55 HOH HOH . H 4 HOH B 34 634 56 HOH HOH . H 4 HOH B 35 635 57 HOH HOH . H 4 HOH B 36 636 58 HOH HOH . H 4 HOH B 37 637 59 HOH HOH . H 4 HOH B 38 638 61 HOH HOH . H 4 HOH B 39 639 64 HOH HOH . H 4 HOH B 40 640 65 HOH HOH . H 4 HOH B 41 641 66 HOH HOH . H 4 HOH B 42 642 68 HOH HOH . H 4 HOH B 43 643 69 HOH HOH . H 4 HOH B 44 644 70 HOH HOH . H 4 HOH B 45 645 71 HOH HOH . H 4 HOH B 46 646 72 HOH HOH . H 4 HOH B 47 647 74 HOH HOH . H 4 HOH B 48 648 77 HOH HOH . H 4 HOH B 49 649 78 HOH HOH . H 4 HOH B 50 650 81 HOH HOH . H 4 HOH B 51 651 82 HOH HOH . H 4 HOH B 52 652 83 HOH HOH . H 4 HOH B 53 653 84 HOH HOH . H 4 HOH B 54 654 85 HOH HOH . H 4 HOH B 55 655 86 HOH HOH . H 4 HOH B 56 656 87 HOH HOH . H 4 HOH B 57 657 88 HOH HOH . H 4 HOH B 58 658 89 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 AKG . . . D 3 4.458 -2.627 -3.848 1 19.71 ? C1 AKG 502 A 1 HETATM 2 O O1 AKG . . . D 3 3.462 -2.67 -4.615 0.65 23.32 ? O1 AKG 502 A 1 HETATM 3 O O2 AKG . . . D 3 5.295 -3.567 -3.861 0.58 24.25 ? O2 AKG 502 A 1 HETATM 4 C C2 AKG . . . D 3 4.646 -1.446 -2.916 1 21.79 ? C2 AKG 502 A 1 HETATM 5 O O5 AKG . . . D 3 5.398 -0.541 -3.213 0.79 28.48 ? O5 AKG 502 A 1 HETATM 6 C C3 AKG . . . D 3 3.901 -1.367 -1.605 0.87 21.22 ? C3 AKG 502 A 1 HETATM 7 C C4 AKG . . . D 3 4.368 -0.128 -0.873 1 19.16 ? C4 AKG 502 A 1 HETATM 8 C C5 AKG . . . D 3 3.376 0.219 0.211 0.42 22.56 ? C5 AKG 502 A 1 HETATM 9 O O3 AKG . . . D 3 2.182 -0.164 0.108 1 26.21 ? O3 AKG 502 A 1 HETATM 10 O O4 AKG . . . D 3 3.74 0.891 1.211 1 24.03 ? O4 AKG 502 A 1 # _model_server_stats.io_time_ms 55 _model_server_stats.parse_time_ms 13 _model_server_stats.create_model_time_ms 8 _model_server_stats.query_time_ms 307 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 10 #