data_4QVB
#
_model_server_result.job_id            3gM78Rl0uD28kmJX2ZDQGg 
_model_server_result.datetime_utc      '2024-10-10 17:16:22' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          4qvb 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"N","auth_seq_id":202}' 
#
_entry.id    4QVB 
#
_exptl.entry_id    4QVB 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              773.593 
_entity.id                          6 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            'COENZYME F420' 
_entity.pdbx_number_of_molecules    2 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            4QVB 
_cell.length_a            53.579 
_cell.length_b            65.172 
_cell.length_c            77.063 
_cell.Z_PDB               8 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 4QVB 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        19 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 21 21 21' 
#
_pdbx_struct_assembly.method_details        PISA 
_pdbx_struct_assembly.oligomeric_details    dimeric 
_pdbx_struct_assembly.oligomeric_count      2 
_pdbx_struct_assembly.details               author_and_software_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R,S,T,U 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 6 M N N 
? 6 N N N 
#
_struct_conn.conn_type_id                   metalc 
_struct_conn.details                        ? 
_struct_conn.id                             metalc1 
_struct_conn.ptnr1_label_asym_id            N 
_struct_conn.ptnr1_label_atom_id            O2P 
_struct_conn.ptnr1_label_comp_id            F42 
_struct_conn.ptnr1_label_seq_id             . 
_struct_conn.ptnr1_auth_asym_id             B 
_struct_conn.ptnr1_auth_comp_id             F42 
_struct_conn.ptnr1_auth_seq_id              202 
_struct_conn.ptnr1_symmetry                 1_555 
_struct_conn.ptnr2_label_asym_id            S 
_struct_conn.ptnr2_label_atom_id            NA 
_struct_conn.ptnr2_label_comp_id            NA 
_struct_conn.ptnr2_label_seq_id             . 
_struct_conn.ptnr2_auth_asym_id             B 
_struct_conn.ptnr2_auth_comp_id             NA 
_struct_conn.ptnr2_auth_seq_id              207 
_struct_conn.ptnr2_symmetry                 1_555 
_struct_conn.pdbx_ptnr1_PDB_ins_code        ? 
_struct_conn.pdbx_ptnr1_label_alt_id        ? 
_struct_conn.pdbx_ptnr1_standard_comp_id    ? 
_struct_conn.pdbx_ptnr2_PDB_ins_code        ? 
_struct_conn.pdbx_ptnr2_label_alt_id        ? 
_struct_conn.pdbx_ptnr3_PDB_ins_code        ? 
_struct_conn.pdbx_ptnr3_label_alt_id        ? 
_struct_conn.pdbx_ptnr3_label_asym_id       ? 
_struct_conn.pdbx_ptnr3_label_atom_id       ? 
_struct_conn.pdbx_ptnr3_label_comp_id       ? 
_struct_conn.pdbx_ptnr3_label_seq_id        ? 
_struct_conn.pdbx_PDB_id                    ? 
_struct_conn.pdbx_dist_value                2.243 
_struct_conn.pdbx_value_order               ? 
#
_chem_comp.formula           'C29 H36 N5 O18 P' 
_chem_comp.formula_weight    773.593 
_chem_comp.id                F42 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              'COENZYME F420' 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
N1 C2 F42 sing 79 n y 
N1 C10 F42 doub 80 n y 
C2 O2 F42 doub 81 n n 
C2 N3 F42 sing 82 n y 
N3 C4 F42 sing 83 n y 
N3 HN3 F42 sing 84 n n 
C4 O4 F42 doub 85 n n 
C4 C4A F42 sing 86 n y 
C4A C5 F42 doub 87 n y 
C4A C10 F42 sing 88 n y 
C5 C5A F42 sing 89 n y 
C5 H5 F42 sing 90 n n 
C5A C6 F42 doub 91 n y 
C5A C9A F42 sing 92 n y 
C6 C7 F42 sing 93 n y 
C6 H6 F42 sing 94 n n 
C7 C8 F42 doub 95 n y 
C7 HC7 F42 sing 96 n n 
C8 O8M F42 sing 97 n n 
C8 C9 F42 sing 98 n y 
O8M HM81 F42 sing 99 n n 
C9 C9A F42 doub 100 n y 
C9 H9 F42 sing 101 n n 
C9A N10 F42 sing 102 n y 
N10 C10 F42 sing 103 n y 
N10 C1' F42 sing 104 n n 
C1' C2' F42 sing 105 n n 
C1' "H1'1" F42 sing 106 n n 
C1' "H1'2" F42 sing 107 n n 
C2' O2' F42 sing 108 n n 
C2' C3' F42 sing 109 n n 
C2' H2' F42 sing 110 n n 
O2' HO2' F42 sing 111 n n 
C3' O3' F42 sing 112 n n 
C3' C4' F42 sing 113 n n 
C3' H3' F42 sing 114 n n 
O3' HO3' F42 sing 115 n n 
C4' O4' F42 sing 116 n n 
C4' C5' F42 sing 117 n n 
C4' H4' F42 sing 118 n n 
O4' HO4' F42 sing 119 n n 
C5' O5' F42 sing 120 n n 
C5' "H5'1" F42 sing 121 n n 
C5' "H5'2" F42 sing 122 n n 
O5' P F42 sing 123 n n 
P O1P F42 doub 124 n n 
P O2P F42 sing 125 n n 
P O3P F42 sing 126 n n 
O2P HOP2 F42 sing 127 n n 
O3P C1I F42 sing 128 n n 
C1I C2I F42 sing 129 n n 
C1I C3I F42 sing 130 n n 
C1I H1I1 F42 sing 131 n n 
C2I H2I1 F42 sing 132 n n 
C2I H2I2 F42 sing 133 n n 
C2I H2I3 F42 sing 134 n n 
C3I O3I F42 doub 135 n n 
C3I N1H F42 sing 136 n n 
N1H C1H F42 sing 137 n n 
N1H HNH1 F42 sing 138 n n 
C1H C2H F42 sing 139 n n 
C1H C3H F42 sing 140 n n 
C1H H1H1 F42 sing 141 n n 
C2H O2U F42 sing 142 n n 
C2H O2T F42 doub 143 n n 
O2U HXU F42 sing 144 n n 
C3H C4H F42 sing 145 n n 
C3H H3H1 F42 sing 146 n n 
C3H H3H2 F42 sing 147 n n 
C4H C5H F42 sing 148 n n 
C4H H4H1 F42 sing 149 n n 
C4H H4H2 F42 sing 150 n n 
C5H O5H F42 doub 151 n n 
C5H N1G F42 sing 152 n n 
N1G C1G F42 sing 153 n n 
N1G HNG1 F42 sing 154 n n 
C1G C2G F42 sing 155 n n 
C1G C3G F42 sing 156 n n 
C1G H1G1 F42 sing 157 n n 
C2G O2V F42 sing 158 n n 
C2G O2W F42 doub 159 n n 
O2V HXV F42 sing 160 n n 
C3G C4G F42 sing 161 n n 
C3G H3G1 F42 sing 162 n n 
C3G H3G2 F42 sing 163 n n 
C4G C5G F42 sing 164 n n 
C4G H4G1 F42 sing 165 n n 
C4G H4G2 F42 sing 166 n n 
C5G O6G F42 sing 167 n n 
C5G O7G F42 doub 168 n n 
O6G HXT F42 sing 169 n n 
#
_atom_sites.entry_id                     4QVB 
_atom_sites.fract_transf_matrix[1][1]    0.018664 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.015344 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.012976 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
C 2 FMT A 1 301 301 FMT FMT . 
D 2 FMT A 1 302 302 FMT FMT . 
E 2 FMT A 1 303 303 FMT FMT . 
F 3 PDO A 1 304 315 PDO PDO . 
G 3 PDO A 1 305 316 PDO PDO . 
H 4 EDO A 1 306 317 EDO EDO . 
I 4 EDO A 1 307 318 EDO EDO . 
J 4 EDO A 1 308 319 EDO EDO . 
K 4 EDO A 1 309 320 EDO EDO . 
L 5 PGO A 1 310 321 PGO PGO . 
M 6 F42 B 1 201 201 F42 F42 . 
N 6 F42 B 1 202 202 F42 F42 . 
O 2 FMT B 1 203 304 FMT FMT . 
P 2 FMT B 1 204 305 FMT FMT . 
Q 3 PDO B 1 205 313 PDO PDO . 
R 3 PDO B 1 206 314 PDO PDO . 
S 7 NA B 1 207 322 NA NA . 
T 8 HOH A 1 401 1 HOH HOH . 
T 8 HOH A 2 402 2 HOH HOH . 
T 8 HOH A 3 403 3 HOH HOH . 
T 8 HOH A 4 404 4 HOH HOH . 
T 8 HOH A 5 405 5 HOH HOH . 
T 8 HOH A 6 406 6 HOH HOH . 
T 8 HOH A 7 407 7 HOH HOH . 
T 8 HOH A 8 408 8 HOH HOH . 
T 8 HOH A 9 409 9 HOH HOH . 
T 8 HOH A 10 410 11 HOH HOH . 
T 8 HOH A 11 411 12 HOH HOH . 
T 8 HOH A 12 412 13 HOH HOH . 
T 8 HOH A 13 413 14 HOH HOH . 
T 8 HOH A 14 414 17 HOH HOH . 
T 8 HOH A 15 415 29 HOH HOH . 
T 8 HOH A 16 416 31 HOH HOH . 
T 8 HOH A 17 417 33 HOH HOH . 
T 8 HOH A 18 418 37 HOH HOH . 
T 8 HOH A 19 419 40 HOH HOH . 
T 8 HOH A 20 420 41 HOH HOH . 
T 8 HOH A 21 421 51 HOH HOH . 
T 8 HOH A 22 422 52 HOH HOH . 
T 8 HOH A 23 423 53 HOH HOH . 
T 8 HOH A 24 424 54 HOH HOH . 
T 8 HOH A 25 425 55 HOH HOH . 
T 8 HOH A 26 426 56 HOH HOH . 
T 8 HOH A 27 427 58 HOH HOH . 
U 8 HOH B 1 301 10 HOH HOH . 
U 8 HOH B 2 302 15 HOH HOH . 
U 8 HOH B 3 303 16 HOH HOH . 
U 8 HOH B 4 304 18 HOH HOH . 
U 8 HOH B 5 305 19 HOH HOH . 
U 8 HOH B 6 306 20 HOH HOH . 
U 8 HOH B 7 307 21 HOH HOH . 
U 8 HOH B 8 308 22 HOH HOH . 
U 8 HOH B 9 309 23 HOH HOH . 
U 8 HOH B 10 310 24 HOH HOH . 
U 8 HOH B 11 311 25 HOH HOH . 
U 8 HOH B 12 312 26 HOH HOH . 
U 8 HOH B 13 313 27 HOH HOH . 
U 8 HOH B 14 314 28 HOH HOH . 
U 8 HOH B 15 315 30 HOH HOH . 
U 8 HOH B 16 316 32 HOH HOH . 
U 8 HOH B 17 317 34 HOH HOH . 
U 8 HOH B 18 318 35 HOH HOH . 
U 8 HOH B 19 319 36 HOH HOH . 
U 8 HOH B 20 320 38 HOH HOH . 
U 8 HOH B 21 321 39 HOH HOH . 
U 8 HOH B 22 322 42 HOH HOH . 
U 8 HOH B 23 323 43 HOH HOH . 
U 8 HOH B 24 324 44 HOH HOH . 
U 8 HOH B 25 325 45 HOH HOH . 
U 8 HOH B 26 326 46 HOH HOH . 
U 8 HOH B 27 327 47 HOH HOH . 
U 8 HOH B 28 328 48 HOH HOH . 
U 8 HOH B 29 329 49 HOH HOH . 
U 8 HOH B 30 330 50 HOH HOH . 
U 8 HOH B 31 331 57 HOH HOH . 
U 8 HOH B 32 332 59 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C C1' F42 . . . N 6 -0.147 -0.039 -0.297 1 50.22 ? C1' F42 202 B 1 
HETATM 2 C C2' F42 . . . N 6 1.242 0.138 0.289 1 57.09 ? C2' F42 202 B 1 
HETATM 3 O O2' F42 . . . N 6 2.142 0.47 -0.736 1 61.71 ? O2' F42 202 B 1 
HETATM 4 C C3' F42 . . . N 6 1.884 -0.895 1.196 1 52.59 ? C3' F42 202 B 1 
HETATM 5 O O3' F42 . . . N 6 3.257 -0.787 1.016 1 56.57 ? O3' F42 202 B 1 
HETATM 6 C C4' F42 . . . N 6 1.559 -2.368 1.081 1 59.32 ? C4' F42 202 B 1 
HETATM 7 O O4' F42 . . . N 6 0.166 -2.577 1.24 1 60.02 ? O4' F42 202 B 1 
HETATM 8 C C5' F42 . . . N 6 2.313 -3.355 1.952 1 64.26 ? C5' F42 202 B 1 
HETATM 9 O O5' F42 . . . N 6 1.47 -3.678 3.033 1 62.89 ? O5' F42 202 B 1 
HETATM 10 P P F42 . . . N 6 2.009 -3.802 4.519 1 62.52 ? P F42 202 B 1 
HETATM 11 O O1P F42 . . . N 6 1.124 -2.995 5.445 1 48.87 ? O1P F42 202 B 1 
HETATM 12 O O2P F42 . . . N 6 1.865 -5.278 4.852 1 59.26 ? O2P F42 202 B 1 
HETATM 13 O O3P F42 . . . N 6 3.543 -3.37 4.677 1 56.35 ? O3P F42 202 B 1 
HETATM 14 C C1I F42 . . . N 6 4.537 -4.353 4.957 1 55.65 ? C1I F42 202 B 1 
HETATM 15 C C2I F42 . . . N 6 5.684 -4.221 3.977 1 53.8 ? C2I F42 202 B 1 
HETATM 16 C C3I F42 . . . N 6 4.977 -4.269 6.412 1 49.19 ? C3I F42 202 B 1 
HETATM 17 O O3I F42 . . . N 6 4.64 -3.294 7.066 1 45.16 ? O3I F42 202 B 1 
HETATM 18 N N1H F42 . . . N 6 5.768 -5.314 7.005 1 51.22 ? N1H F42 202 B 1 
HETATM 19 C C1H F42 . . . N 6 6.189 -5.279 8.376 1 43.91 ? C1H F42 202 B 1 
HETATM 20 C C2H F42 . . . N 6 7.626 -5.712 8.589 1 43.1 ? C2H F42 202 B 1 
HETATM 21 O O2U F42 . . . N 6 8.209 -5.518 9.699 1 38.2 ? O2U F42 202 B 1 
HETATM 22 O O2T F42 . . . N 6 8.229 -6.29 7.652 1 48.74 ? O2T F42 202 B 1 
HETATM 23 C C3H F42 . . . N 6 5.291 -6.205 9.159 1 45.01 ? C3H F42 202 B 1 
HETATM 24 C C4H F42 . . . N 6 4.682 -5.494 10.33 1 40.84 ? C4H F42 202 B 1 
HETATM 25 C C5H F42 . . . N 6 3.515 -6.218 10.963 1 42.29 ? C5H F42 202 B 1 
HETATM 26 O O5H F42 . . . N 6 2.553 -5.583 11.337 1 40.51 ? O5H F42 202 B 1 
HETATM 27 N N1G F42 . . . N 6 3.504 -7.621 11.151 1 41.21 ? N1G F42 202 B 1 
HETATM 28 C C1G F42 . . . N 6 2.358 -8.184 11.78 1 44.68 ? C1G F42 202 B 1 
HETATM 29 C C2G F42 . . . N 6 2.55 -8.089 13.289 1 46.6 ? C2G F42 202 B 1 
HETATM 30 O O2V F42 . . . N 6 3.712 -7.932 13.754 1 39.11 ? O2V F42 202 B 1 
HETATM 31 O O2W F42 . . . N 6 1.569 -8.155 14.087 1 46.16 ? O2W F42 202 B 1 
HETATM 32 C C3G F42 . . . N 6 2.116 -9.589 11.279 1 49.4 ? C3G F42 202 B 1 
HETATM 33 C C4G F42 . . . N 6 0.809 -10.197 11.732 1 55.4 ? C4G F42 202 B 1 
HETATM 34 C C5G F42 . . . N 6 0.666 -11.618 11.222 1 60.03 ? C5G F42 202 B 1 
HETATM 35 O O6G F42 . . . N 6 -0.118 -11.865 10.269 1 56.82 ? O6G F42 202 B 1 
HETATM 36 O O7G F42 . . . N 6 1.34 -12.549 11.743 1 67.13 ? O7G F42 202 B 1 
#
_model_server_stats.io_time_ms              13 
_model_server_stats.parse_time_ms           7 
_model_server_stats.create_model_time_ms    3 
_model_server_stats.query_time_ms           285 
_model_server_stats.encode_time_ms          2 
_model_server_stats.element_count           36 
#