data_4QVB # _model_server_result.job_id kD_hkstoDypEZLGB4bPkLw _model_server_result.datetime_utc '2024-10-10 17:14:49' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 4qvb # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"D","auth_seq_id":302}' # _entry.id 4QVB # _exptl.entry_id 4QVB _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 46.025 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'FORMIC ACID' _entity.pdbx_number_of_molecules 5 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment F420 _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 4QVB _cell.length_a 53.579 _cell.length_b 65.172 _cell.length_c 77.063 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 4QVB _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 21 21 21' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R,S,T,U _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 C N N ? 2 D N N ? 2 E N N ? 2 O N N ? 2 P N N # _struct_conn.conn_type_id metalc _struct_conn.details ? _struct_conn.id metalc1 _struct_conn.ptnr1_label_asym_id N _struct_conn.ptnr1_label_atom_id O2P _struct_conn.ptnr1_label_comp_id F42 _struct_conn.ptnr1_label_seq_id . _struct_conn.ptnr1_auth_asym_id B _struct_conn.ptnr1_auth_comp_id F42 _struct_conn.ptnr1_auth_seq_id 202 _struct_conn.ptnr1_symmetry 1_555 _struct_conn.ptnr2_label_asym_id S _struct_conn.ptnr2_label_atom_id NA _struct_conn.ptnr2_label_comp_id NA _struct_conn.ptnr2_label_seq_id . _struct_conn.ptnr2_auth_asym_id B _struct_conn.ptnr2_auth_comp_id NA _struct_conn.ptnr2_auth_seq_id 207 _struct_conn.ptnr2_symmetry 1_555 _struct_conn.pdbx_ptnr1_PDB_ins_code ? _struct_conn.pdbx_ptnr1_label_alt_id ? _struct_conn.pdbx_ptnr1_standard_comp_id ? _struct_conn.pdbx_ptnr2_PDB_ins_code ? _struct_conn.pdbx_ptnr2_label_alt_id ? _struct_conn.pdbx_ptnr3_PDB_ins_code ? _struct_conn.pdbx_ptnr3_label_alt_id ? _struct_conn.pdbx_ptnr3_label_asym_id ? _struct_conn.pdbx_ptnr3_label_atom_id ? _struct_conn.pdbx_ptnr3_label_comp_id ? _struct_conn.pdbx_ptnr3_label_seq_id ? _struct_conn.pdbx_PDB_id ? _struct_conn.pdbx_dist_value 2.243 _struct_conn.pdbx_value_order ? # _chem_comp.formula 'C H2 O2' _chem_comp.formula_weight 46.025 _chem_comp.id FMT _chem_comp.mon_nstd_flag . _chem_comp.name 'FORMIC ACID' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C O1 FMT doub 170 n n C O2 FMT sing 171 n n C H FMT sing 172 n n O2 HO2 FMT sing 173 n n # _atom_sites.entry_id 4QVB _atom_sites.fract_transf_matrix[1][1] 0.018664 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.015344 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.012976 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 FMT A 1 301 301 FMT FMT . D 2 FMT A 1 302 302 FMT FMT . E 2 FMT A 1 303 303 FMT FMT . F 3 PDO A 1 304 315 PDO PDO . G 3 PDO A 1 305 316 PDO PDO . H 4 EDO A 1 306 317 EDO EDO . I 4 EDO A 1 307 318 EDO EDO . J 4 EDO A 1 308 319 EDO EDO . K 4 EDO A 1 309 320 EDO EDO . L 5 PGO A 1 310 321 PGO PGO . M 6 F42 B 1 201 201 F42 F42 . N 6 F42 B 1 202 202 F42 F42 . O 2 FMT B 1 203 304 FMT FMT . P 2 FMT B 1 204 305 FMT FMT . Q 3 PDO B 1 205 313 PDO PDO . R 3 PDO B 1 206 314 PDO PDO . S 7 NA B 1 207 322 NA NA . T 8 HOH A 1 401 1 HOH HOH . T 8 HOH A 2 402 2 HOH HOH . T 8 HOH A 3 403 3 HOH HOH . T 8 HOH A 4 404 4 HOH HOH . T 8 HOH A 5 405 5 HOH HOH . T 8 HOH A 6 406 6 HOH HOH . T 8 HOH A 7 407 7 HOH HOH . T 8 HOH A 8 408 8 HOH HOH . T 8 HOH A 9 409 9 HOH HOH . T 8 HOH A 10 410 11 HOH HOH . T 8 HOH A 11 411 12 HOH HOH . T 8 HOH A 12 412 13 HOH HOH . T 8 HOH A 13 413 14 HOH HOH . T 8 HOH A 14 414 17 HOH HOH . T 8 HOH A 15 415 29 HOH HOH . T 8 HOH A 16 416 31 HOH HOH . T 8 HOH A 17 417 33 HOH HOH . T 8 HOH A 18 418 37 HOH HOH . T 8 HOH A 19 419 40 HOH HOH . T 8 HOH A 20 420 41 HOH HOH . T 8 HOH A 21 421 51 HOH HOH . T 8 HOH A 22 422 52 HOH HOH . T 8 HOH A 23 423 53 HOH HOH . T 8 HOH A 24 424 54 HOH HOH . T 8 HOH A 25 425 55 HOH HOH . T 8 HOH A 26 426 56 HOH HOH . T 8 HOH A 27 427 58 HOH HOH . U 8 HOH B 1 301 10 HOH HOH . U 8 HOH B 2 302 15 HOH HOH . U 8 HOH B 3 303 16 HOH HOH . U 8 HOH B 4 304 18 HOH HOH . U 8 HOH B 5 305 19 HOH HOH . U 8 HOH B 6 306 20 HOH HOH . U 8 HOH B 7 307 21 HOH HOH . U 8 HOH B 8 308 22 HOH HOH . U 8 HOH B 9 309 23 HOH HOH . U 8 HOH B 10 310 24 HOH HOH . U 8 HOH B 11 311 25 HOH HOH . U 8 HOH B 12 312 26 HOH HOH . U 8 HOH B 13 313 27 HOH HOH . U 8 HOH B 14 314 28 HOH HOH . U 8 HOH B 15 315 30 HOH HOH . U 8 HOH B 16 316 32 HOH HOH . U 8 HOH B 17 317 34 HOH HOH . U 8 HOH B 18 318 35 HOH HOH . U 8 HOH B 19 319 36 HOH HOH . U 8 HOH B 20 320 38 HOH HOH . U 8 HOH B 21 321 39 HOH HOH . U 8 HOH B 22 322 42 HOH HOH . U 8 HOH B 23 323 43 HOH HOH . U 8 HOH B 24 324 44 HOH HOH . U 8 HOH B 25 325 45 HOH HOH . U 8 HOH B 26 326 46 HOH HOH . U 8 HOH B 27 327 47 HOH HOH . U 8 HOH B 28 328 48 HOH HOH . U 8 HOH B 29 329 49 HOH HOH . U 8 HOH B 30 330 50 HOH HOH . U 8 HOH B 31 331 57 HOH HOH . U 8 HOH B 32 332 59 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C FMT . . . D 2 18.614 -3.805 8.993 1 58.69 ? C FMT 302 A 1 HETATM 2 O O1 FMT . . . D 2 18.811 -3.375 10.131 1 51.13 ? O1 FMT 302 A 1 HETATM 3 O O2 FMT . . . D 2 19.204 -3.408 7.985 1 59.22 ? O2 FMT 302 A 1 # _model_server_stats.io_time_ms 5 _model_server_stats.parse_time_ms 6 _model_server_stats.create_model_time_ms 3 _model_server_stats.query_time_ms 266 _model_server_stats.encode_time_ms 1 _model_server_stats.element_count 3 #