data_4QX5 # _model_server_result.job_id 3dKmQlyja7UlrlBOV3K3uA _model_server_result.datetime_utc '2025-02-18 14:10:55' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 4qx5 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"B","auth_seq_id":401}' # _entry.id 4QX5 # _exptl.entry_id 4QX5 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 329.206 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description "ADENOSINE-3',5'-CYCLIC-MONOPHOSPHATE" _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 4QX5 _cell.length_a 48.44 _cell.length_b 48.44 _cell.length_c 103.462 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 4QX5 _symmetry.cell_setting ? _symmetry.Int_Tables_number 92 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 41 21 2' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R,S,T,U _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id B _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _chem_comp.formula 'C10 H12 N5 O6 P' _chem_comp.formula_weight 329.206 _chem_comp.id CMP _chem_comp.mon_nstd_flag . _chem_comp.name "ADENOSINE-3',5'-CYCLIC-MONOPHOSPHATE" _chem_comp.type non-polymer _chem_comp.pdbx_synonyms 'CYCLIC AMP;CAMP' # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag P O1P CMP doub 70 n n P O2P CMP sing 71 n n P O5' CMP sing 72 n n P O3' CMP sing 73 n n O2P HOP2 CMP sing 74 n n O5' C5' CMP sing 75 n n C5' C4' CMP sing 76 n n C5' "H5'1" CMP sing 77 n n C5' "H5'2" CMP sing 78 n n C4' O4' CMP sing 79 n n C4' C3' CMP sing 80 n n C4' H4' CMP sing 81 n n O4' C1' CMP sing 82 n n C3' O3' CMP sing 83 n n C3' C2' CMP sing 84 n n C3' H3' CMP sing 85 n n C2' O2' CMP sing 86 n n C2' C1' CMP sing 87 n n C2' H2' CMP sing 88 n n O2' HO2' CMP sing 89 n n C1' N9 CMP sing 90 n n C1' H1' CMP sing 91 n n N9 C8 CMP sing 92 n y N9 C4 CMP sing 93 n y C8 N7 CMP doub 94 n y C8 H8 CMP sing 95 n n N7 C5 CMP sing 96 n y C5 C6 CMP sing 97 n y C5 C4 CMP doub 98 n y C6 N6 CMP sing 99 n n C6 N1 CMP doub 100 n y N6 HN61 CMP sing 101 n n N6 HN62 CMP sing 102 n n N1 C2 CMP sing 103 n y C2 N3 CMP doub 104 n y C2 H2 CMP sing 105 n n N3 C4 CMP sing 106 n y # _atom_sites.entry_id 4QX5 _atom_sites.fract_transf_matrix[1][1] 0.020644 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.020644 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.009665 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 CMP A 1 401 1 CMP CMP . C 3 IOD A 1 402 1 IOD I . D 3 IOD A 1 403 2 IOD I . E 3 IOD A 1 404 3 IOD I . F 3 IOD A 1 405 4 IOD I . G 3 IOD A 1 406 5 IOD I . H 3 IOD A 1 407 7 IOD I . I 3 IOD A 1 408 8 IOD I . J 3 IOD A 1 409 9 IOD I . K 3 IOD A 1 410 13 IOD I . L 3 IOD A 1 411 14 IOD I . M 3 IOD A 1 412 15 IOD I . N 3 IOD A 1 413 16 IOD I . O 3 IOD A 1 414 17 IOD I . P 3 IOD A 1 415 19 IOD I . Q 3 IOD A 1 416 21 IOD I . R 3 IOD A 1 417 22 IOD I . S 3 IOD A 1 418 23 IOD I . T 3 IOD A 1 419 24 IOD I . U 4 HOH A 1 501 6 HOH HOH . U 4 HOH A 2 502 7 HOH HOH . U 4 HOH A 3 503 10 HOH HOH . U 4 HOH A 4 504 11 HOH HOH . U 4 HOH A 5 505 12 HOH HOH . U 4 HOH A 6 506 14 HOH HOH . U 4 HOH A 7 507 15 HOH HOH . U 4 HOH A 8 508 17 HOH HOH . U 4 HOH A 9 509 21 HOH HOH . U 4 HOH A 10 510 22 HOH HOH . U 4 HOH A 11 511 23 HOH HOH . U 4 HOH A 12 512 24 HOH HOH . U 4 HOH A 13 513 25 HOH HOH . U 4 HOH A 14 514 26 HOH HOH . U 4 HOH A 15 515 28 HOH HOH . U 4 HOH A 16 516 29 HOH HOH . U 4 HOH A 17 517 31 HOH HOH . U 4 HOH A 18 518 33 HOH HOH . U 4 HOH A 19 519 34 HOH HOH . U 4 HOH A 20 520 35 HOH HOH . U 4 HOH A 21 521 37 HOH HOH . U 4 HOH A 22 522 38 HOH HOH . U 4 HOH A 23 523 39 HOH HOH . U 4 HOH A 24 524 40 HOH HOH . U 4 HOH A 25 525 41 HOH HOH . U 4 HOH A 26 526 42 HOH HOH . U 4 HOH A 27 527 43 HOH HOH . U 4 HOH A 28 528 44 HOH HOH . U 4 HOH A 29 529 45 HOH HOH . U 4 HOH A 30 530 46 HOH HOH . U 4 HOH A 31 531 47 HOH HOH . U 4 HOH A 32 532 48 HOH HOH . U 4 HOH A 33 533 49 HOH HOH . U 4 HOH A 34 534 50 HOH HOH . U 4 HOH A 35 535 51 HOH HOH . U 4 HOH A 36 536 52 HOH HOH . U 4 HOH A 37 537 53 HOH HOH . U 4 HOH A 38 538 54 HOH HOH . U 4 HOH A 39 539 56 HOH HOH . U 4 HOH A 40 540 57 HOH HOH . U 4 HOH A 41 541 58 HOH HOH . U 4 HOH A 42 542 59 HOH HOH . U 4 HOH A 43 543 60 HOH HOH . U 4 HOH A 44 544 61 HOH HOH . U 4 HOH A 45 545 62 HOH HOH . U 4 HOH A 46 546 63 HOH HOH . U 4 HOH A 47 547 64 HOH HOH . U 4 HOH A 48 548 65 HOH HOH . U 4 HOH A 49 549 66 HOH HOH . U 4 HOH A 50 550 67 HOH HOH . U 4 HOH A 51 551 68 HOH HOH . U 4 HOH A 52 552 69 HOH HOH . U 4 HOH A 53 553 70 HOH HOH . U 4 HOH A 54 554 71 HOH HOH . U 4 HOH A 55 555 72 HOH HOH . U 4 HOH A 56 556 73 HOH HOH . U 4 HOH A 57 557 74 HOH HOH . U 4 HOH A 58 558 75 HOH HOH . U 4 HOH A 59 559 76 HOH HOH . U 4 HOH A 60 560 77 HOH HOH . U 4 HOH A 61 561 78 HOH HOH . U 4 HOH A 62 562 79 HOH HOH . U 4 HOH A 63 563 80 HOH HOH . U 4 HOH A 64 564 81 HOH HOH . U 4 HOH A 65 565 82 HOH HOH . U 4 HOH A 66 566 83 HOH HOH . U 4 HOH A 67 567 84 HOH HOH . U 4 HOH A 68 568 85 HOH HOH . U 4 HOH A 69 569 86 HOH HOH . U 4 HOH A 70 570 87 HOH HOH . U 4 HOH A 71 571 90 HOH HOH . U 4 HOH A 72 572 91 HOH HOH . U 4 HOH A 73 573 94 HOH HOH . U 4 HOH A 74 574 95 HOH HOH . U 4 HOH A 75 575 96 HOH HOH . U 4 HOH A 76 576 97 HOH HOH . U 4 HOH A 77 577 98 HOH HOH . U 4 HOH A 78 578 99 HOH HOH . U 4 HOH A 79 579 100 HOH HOH . U 4 HOH A 80 580 101 HOH HOH . U 4 HOH A 81 581 102 HOH HOH . U 4 HOH A 82 582 103 HOH HOH . U 4 HOH A 83 583 105 HOH HOH . U 4 HOH A 84 584 106 HOH HOH . U 4 HOH A 85 585 109 HOH HOH . U 4 HOH A 86 586 110 HOH HOH . U 4 HOH A 87 587 111 HOH HOH . U 4 HOH A 88 588 113 HOH HOH . U 4 HOH A 89 589 114 HOH HOH . U 4 HOH A 90 590 115 HOH HOH . U 4 HOH A 91 591 117 HOH HOH . U 4 HOH A 92 592 118 HOH HOH . U 4 HOH A 93 593 120 HOH HOH . U 4 HOH A 94 594 121 HOH HOH . U 4 HOH A 95 595 123 HOH HOH . U 4 HOH A 96 596 126 HOH HOH . U 4 HOH A 97 597 127 HOH HOH . U 4 HOH A 98 598 129 HOH HOH . U 4 HOH A 99 599 131 HOH HOH . U 4 HOH A 100 600 132 HOH HOH . U 4 HOH A 101 601 135 HOH HOH . U 4 HOH A 102 602 136 HOH HOH . U 4 HOH A 103 603 137 HOH HOH . U 4 HOH A 104 604 139 HOH HOH . U 4 HOH A 105 605 141 HOH HOH . U 4 HOH A 106 606 143 HOH HOH . U 4 HOH A 107 607 144 HOH HOH . U 4 HOH A 108 608 145 HOH HOH . U 4 HOH A 109 609 146 HOH HOH . U 4 HOH A 110 610 147 HOH HOH . U 4 HOH A 111 611 148 HOH HOH . U 4 HOH A 112 612 149 HOH HOH . U 4 HOH A 113 613 150 HOH HOH . U 4 HOH A 114 614 151 HOH HOH . U 4 HOH A 115 615 152 HOH HOH . U 4 HOH A 116 616 153 HOH HOH . U 4 HOH A 117 617 154 HOH HOH . U 4 HOH A 118 618 155 HOH HOH . U 4 HOH A 119 619 156 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 P P CMP . A . B 2 -10.705 -1.333 -17.814 0.47 13.2 ? P CMP 401 A 1 HETATM 2 P P CMP . B . B 2 -11.058 -1.591 -17.739 0.47 13.03 ? P CMP 401 A 1 HETATM 3 O O1P CMP . A . B 2 -10.665 -2.497 -18.761 0.47 13.6 ? O1P CMP 401 A 1 HETATM 4 O O1P CMP . B . B 2 -11.155 -2.819 -18.601 0.47 13.26 ? O1P CMP 401 A 1 HETATM 5 O O2P CMP . A . B 2 -10.793 0.092 -18.306 0.47 13.59 ? O2P CMP 401 A 1 HETATM 6 O O2P CMP . B . B 2 -11.228 -0.218 -18.341 0.47 12.07 ? O2P CMP 401 A 1 HETATM 7 O O5' CMP . A . B 2 -11.993 -1.633 -16.897 0.47 19.11 ? O5' CMP 401 A 1 HETATM 8 O O5' CMP . B . B 2 -12.136 -1.724 -16.556 0.47 10.5 ? O5' CMP 401 A 1 HETATM 9 C C5' CMP . A . B 2 -12.02 -2.734 -15.987 0.47 13.33 ? C5' CMP 401 A 1 HETATM 10 C C5' CMP . B . B 2 -11.975 -2.692 -15.514 0.47 16.95 ? C5' CMP 401 A 1 HETATM 11 C C4' CMP . A . B 2 -10.728 -2.726 -15.24 0.47 12.83 ? C4' CMP 401 A 1 HETATM 12 C C4' CMP . B . B 2 -10.593 -2.543 -14.951 0.47 15.17 ? C4' CMP 401 A 1 HETATM 13 O O4' CMP . A . B 2 -10.505 -3.895 -14.425 0.47 14.72 ? O4' CMP 401 A 1 HETATM 14 O O4' CMP . B . B 2 -10.212 -3.55 -13.992 0.47 20.2 ? O4' CMP 401 A 1 HETATM 15 C C3' CMP . A . B 2 -9.524 -2.707 -16.138 0.47 15.3 ? C3' CMP 401 A 1 HETATM 16 C C3' CMP . B . B 2 -9.524 -2.675 -15.993 0.47 15.84 ? C3' CMP 401 A 1 HETATM 17 O O3' CMP . A . B 2 -9.435 -1.483 -16.831 0.47 15.5 ? O3' CMP 401 A 1 HETATM 18 O O3' CMP . B . B 2 -9.625 -1.634 -16.951 0.47 13.31 ? O3' CMP 401 A 1 HETATM 19 C C2' CMP . A . B 2 -8.417 -3.008 -15.156 0.47 19.14 ? C2' CMP 401 A 1 HETATM 20 C C2' CMP . B . B 2 -8.259 -2.769 -15.134 0.47 13.67 ? C2' CMP 401 A 1 HETATM 21 O O2' CMP . A . B 2 -8.166 -1.866 -14.357 0.47 12.43 ? O2' CMP 401 A 1 HETATM 22 O O2' CMP . B . B 2 -7.827 -1.489 -14.684 0.47 13.11 ? O2' CMP 401 A 1 HETATM 23 C C1' CMP . A . B 2 -9.11 -4.072 -14.289 0.47 18.35 ? C1' CMP 401 A 1 HETATM 24 C C1' CMP . B . B 2 -8.795 -3.559 -13.917 0.47 16.98 ? C1' CMP 401 A 1 HETATM 25 N N9 CMP . A . B 2 -8.782 -5.435 -14.724 0.47 29.06 ? N9 CMP 401 A 1 HETATM 26 N N9 CMP . B . B 2 -8.302 -4.95 -13.834 0.47 18.14 ? N9 CMP 401 A 1 HETATM 27 C C8 CMP . A . B 2 -8.967 -6.047 -15.913 0.47 22.85 ? C8 CMP 401 A 1 HETATM 28 C C8 CMP . B . B 2 -7.87 -5.515 -12.687 0.47 25.92 ? C8 CMP 401 A 1 HETATM 29 N N7 CMP . A . B 2 -8.52 -7.334 -15.858 0.47 33.55 ? N7 CMP 401 A 1 HETATM 30 N N7 CMP . B . B 2 -7.476 -6.796 -12.889 0.47 30.47 ? N7 CMP 401 A 1 HETATM 31 C C5 CMP . A . B 2 -8.063 -7.534 -14.602 0.47 30.27 ? C5 CMP 401 A 1 HETATM 32 C C5 CMP . B . B 2 -7.662 -7.074 -14.189 0.47 27.5 ? C5 CMP 401 A 1 HETATM 33 C C6 CMP . A . B 2 -7.457 -8.629 -13.814 0.47 33.2 ? C6 CMP 401 A 1 HETATM 34 C C6 CMP . B . B 2 -7.452 -8.252 -15.063 0.47 31.1 ? C6 CMP 401 A 1 HETATM 35 N N6 CMP . A . B 2 -7.223 -9.842 -14.355 0.47 36.67 ? N6 CMP 401 A 1 HETATM 36 N N6 CMP . B . B 2 -6.953 -9.411 -14.57 0.47 34.69 ? N6 CMP 401 A 1 HETATM 37 N N1 CMP . A . B 2 -7.136 -8.387 -12.532 0.47 35.6 ? N1 CMP 401 A 1 HETATM 38 N N1 CMP . B . B 2 -7.777 -8.129 -16.367 0.47 31.97 ? N1 CMP 401 A 1 HETATM 39 C C2 CMP . A . B 2 -7.357 -7.194 -11.976 0.47 30.7 ? C2 CMP 401 A 1 HETATM 40 C C2 CMP . B . B 2 -8.272 -6.984 -16.871 0.47 31.52 ? C2 CMP 401 A 1 HETATM 41 N N3 CMP . A . B 2 -7.893 -6.16 -12.601 0.47 26.91 ? N3 CMP 401 A 1 HETATM 42 N N3 CMP . B . B 2 -8.487 -5.878 -16.136 0.47 30.25 ? N3 CMP 401 A 1 HETATM 43 C C4 CMP . A . B 2 -8.253 -6.279 -13.883 0.47 29.3 ? C4 CMP 401 A 1 HETATM 44 C C4 CMP . B . B 2 -8.209 -5.856 -14.813 0.47 22.7 ? C4 CMP 401 A 1 # _model_server_stats.io_time_ms 7 _model_server_stats.parse_time_ms 12 _model_server_stats.create_model_time_ms 12 _model_server_stats.query_time_ms 249 _model_server_stats.encode_time_ms 7 _model_server_stats.element_count 44 #