data_4QXA
#
_model_server_result.job_id            ShgwmYgAbumWGTcHfZCwew 
_model_server_result.datetime_utc      '2024-11-26 01:38:07' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          4qxa 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"C","auth_seq_id":301}' 
#
_entry.id    4QXA 
#
_exptl.entry_id    4QXA 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              523.18 
_entity.id                          3 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            "GUANOSINE-5'-TRIPHOSPHATE" 
_entity.pdbx_number_of_molecules    1 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            4QXA 
_cell.length_a            52.776 
_cell.length_b            59.944 
_cell.length_c            127.84 
_cell.Z_PDB               4 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 4QXA 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        19 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 21 21 21' 
#
_pdbx_struct_assembly.method_details        PISA 
_pdbx_struct_assembly.oligomeric_details    dimeric 
_pdbx_struct_assembly.oligomeric_count      2 
_pdbx_struct_assembly.details               author_and_software_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
_struct_asym.details                        ? 
_struct_asym.entity_id                      3 
_struct_asym.id                             C 
_struct_asym.pdbx_modified                  N 
_struct_asym.pdbx_blank_PDB_chainid_flag    N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
metalc ? metalc1 A OG SER 22 A SER 21 1_555 D MG MG . A MG 302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.52 ? 
metalc ? metalc2 A OG1 THR 40 A THR 39 1_555 D MG MG . A MG 302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.448 ? 
metalc ? metalc3 C O2B GTP . A GTP 301 1_555 D MG MG . A MG 302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.393 ? 
metalc ? metalc4 C O1G GTP . A GTP 301 1_555 D MG MG . A MG 302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.395 ? 
metalc ? metalc5 D MG MG . A MG 302 1_555 E O HOH . A HOH 446 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.507 ? 
metalc ? metalc6 D MG MG . A MG 302 1_555 E O HOH . A HOH 447 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.428 ? 
#
_chem_comp.formula           'C10 H16 N5 O14 P3' 
_chem_comp.formula_weight    523.18 
_chem_comp.id                GTP 
_chem_comp.mon_nstd_flag     n 
_chem_comp.name              "GUANOSINE-5'-TRIPHOSPHATE" 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
PG O1G GTP doub 129 n n 
PG O2G GTP sing 130 n n 
PG O3G GTP sing 131 n n 
PG O3B GTP sing 132 n n 
O2G HOG2 GTP sing 133 n n 
O3G HOG3 GTP sing 134 n n 
O3B PB GTP sing 135 n n 
PB O1B GTP doub 136 n n 
PB O2B GTP sing 137 n n 
PB O3A GTP sing 138 n n 
O2B HOB2 GTP sing 139 n n 
O3A PA GTP sing 140 n n 
PA O1A GTP doub 141 n n 
PA O2A GTP sing 142 n n 
PA O5' GTP sing 143 n n 
O2A HOA2 GTP sing 144 n n 
O5' C5' GTP sing 145 n n 
C5' C4' GTP sing 146 n n 
C5' H5' GTP sing 147 n n 
C5' "H5''" GTP sing 148 n n 
C4' O4' GTP sing 149 n n 
C4' C3' GTP sing 150 n n 
C4' H4' GTP sing 151 n n 
O4' C1' GTP sing 152 n n 
C3' O3' GTP sing 153 n n 
C3' C2' GTP sing 154 n n 
C3' H3' GTP sing 155 n n 
O3' HO3' GTP sing 156 n n 
C2' O2' GTP sing 157 n n 
C2' C1' GTP sing 158 n n 
C2' H2' GTP sing 159 n n 
O2' HO2' GTP sing 160 n n 
C1' N9 GTP sing 161 n n 
C1' H1' GTP sing 162 n n 
N9 C8 GTP sing 163 n y 
N9 C4 GTP sing 164 n y 
C8 N7 GTP doub 165 n y 
C8 H8 GTP sing 166 n n 
N7 C5 GTP sing 167 n y 
C5 C6 GTP sing 168 n n 
C5 C4 GTP doub 169 n y 
C6 O6 GTP doub 170 n n 
C6 N1 GTP sing 171 n n 
N1 C2 GTP sing 172 n n 
N1 HN1 GTP sing 173 n n 
C2 N2 GTP sing 174 n n 
C2 N3 GTP doub 175 n n 
N2 HN21 GTP sing 176 n n 
N2 HN22 GTP sing 177 n n 
N3 C4 GTP sing 178 n n 
#
_atom_sites.entry_id                     4QXA 
_atom_sites.fract_transf_matrix[1][1]    0.018948 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.016682 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.007822 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
C 3 GTP A 1 301 1 GTP GTP . 
D 4 MG A 1 302 1 MG MG . 
E 5 HOH A 1 401 1 HOH HOH . 
E 5 HOH A 2 402 2 HOH HOH . 
E 5 HOH A 3 403 3 HOH HOH . 
E 5 HOH A 4 404 5 HOH HOH . 
E 5 HOH A 5 405 6 HOH HOH . 
E 5 HOH A 6 406 7 HOH HOH . 
E 5 HOH A 7 407 8 HOH HOH . 
E 5 HOH A 8 408 10 HOH HOH . 
E 5 HOH A 9 409 11 HOH HOH . 
E 5 HOH A 10 410 12 HOH HOH . 
E 5 HOH A 11 411 13 HOH HOH . 
E 5 HOH A 12 412 14 HOH HOH . 
E 5 HOH A 13 413 17 HOH HOH . 
E 5 HOH A 14 414 18 HOH HOH . 
E 5 HOH A 15 415 19 HOH HOH . 
E 5 HOH A 16 416 20 HOH HOH . 
E 5 HOH A 17 417 22 HOH HOH . 
E 5 HOH A 18 418 23 HOH HOH . 
E 5 HOH A 19 419 26 HOH HOH . 
E 5 HOH A 20 420 27 HOH HOH . 
E 5 HOH A 21 421 28 HOH HOH . 
E 5 HOH A 22 422 29 HOH HOH . 
E 5 HOH A 23 423 30 HOH HOH . 
E 5 HOH A 24 424 31 HOH HOH . 
E 5 HOH A 25 425 33 HOH HOH . 
E 5 HOH A 26 426 34 HOH HOH . 
E 5 HOH A 27 427 36 HOH HOH . 
E 5 HOH A 28 428 37 HOH HOH . 
E 5 HOH A 29 429 38 HOH HOH . 
E 5 HOH A 30 430 40 HOH HOH . 
E 5 HOH A 31 431 41 HOH HOH . 
E 5 HOH A 32 432 42 HOH HOH . 
E 5 HOH A 33 433 44 HOH HOH . 
E 5 HOH A 34 434 46 HOH HOH . 
E 5 HOH A 35 435 47 HOH HOH . 
E 5 HOH A 36 436 48 HOH HOH . 
E 5 HOH A 37 437 49 HOH HOH . 
E 5 HOH A 38 438 50 HOH HOH . 
E 5 HOH A 39 439 51 HOH HOH . 
E 5 HOH A 40 440 52 HOH HOH . 
E 5 HOH A 41 441 54 HOH HOH . 
E 5 HOH A 42 442 55 HOH HOH . 
E 5 HOH A 43 443 57 HOH HOH . 
E 5 HOH A 44 444 58 HOH HOH . 
E 5 HOH A 45 445 59 HOH HOH . 
E 5 HOH A 46 446 61 HOH HOH . 
E 5 HOH A 47 447 62 HOH HOH . 
E 5 HOH A 48 448 63 HOH HOH . 
E 5 HOH A 49 449 64 HOH HOH . 
E 5 HOH A 50 450 65 HOH HOH . 
E 5 HOH A 51 451 66 HOH HOH . 
E 5 HOH A 52 452 67 HOH HOH . 
E 5 HOH A 53 453 68 HOH HOH . 
E 5 HOH A 54 454 69 HOH HOH . 
E 5 HOH A 55 455 71 HOH HOH . 
E 5 HOH A 56 456 74 HOH HOH . 
E 5 HOH A 57 457 75 HOH HOH . 
E 5 HOH A 58 458 78 HOH HOH . 
E 5 HOH A 59 459 79 HOH HOH . 
E 5 HOH A 60 460 80 HOH HOH . 
E 5 HOH A 61 461 82 HOH HOH . 
E 5 HOH A 62 462 83 HOH HOH . 
E 5 HOH A 63 463 84 HOH HOH . 
E 5 HOH A 64 464 86 HOH HOH . 
E 5 HOH A 65 465 87 HOH HOH . 
E 5 HOH A 66 466 88 HOH HOH . 
E 5 HOH A 67 467 89 HOH HOH . 
E 5 HOH A 68 468 91 HOH HOH . 
E 5 HOH A 69 469 92 HOH HOH . 
E 5 HOH A 70 470 94 HOH HOH . 
E 5 HOH A 71 471 96 HOH HOH . 
E 5 HOH A 72 472 97 HOH HOH . 
E 5 HOH A 73 473 98 HOH HOH . 
E 5 HOH A 74 474 104 HOH HOH . 
F 5 HOH B 1 501 4 HOH HOH . 
F 5 HOH B 2 502 9 HOH HOH . 
F 5 HOH B 3 503 15 HOH HOH . 
F 5 HOH B 4 504 16 HOH HOH . 
F 5 HOH B 5 505 21 HOH HOH . 
F 5 HOH B 6 506 24 HOH HOH . 
F 5 HOH B 7 507 25 HOH HOH . 
F 5 HOH B 8 508 32 HOH HOH . 
F 5 HOH B 9 509 35 HOH HOH . 
F 5 HOH B 10 510 39 HOH HOH . 
F 5 HOH B 11 511 43 HOH HOH . 
F 5 HOH B 12 512 45 HOH HOH . 
F 5 HOH B 13 513 53 HOH HOH . 
F 5 HOH B 14 514 56 HOH HOH . 
F 5 HOH B 15 515 60 HOH HOH . 
F 5 HOH B 16 516 70 HOH HOH . 
F 5 HOH B 17 517 72 HOH HOH . 
F 5 HOH B 18 518 73 HOH HOH . 
F 5 HOH B 19 519 76 HOH HOH . 
F 5 HOH B 20 520 77 HOH HOH . 
F 5 HOH B 21 521 81 HOH HOH . 
F 5 HOH B 22 522 85 HOH HOH . 
F 5 HOH B 23 523 90 HOH HOH . 
F 5 HOH B 24 524 93 HOH HOH . 
F 5 HOH B 25 525 95 HOH HOH . 
F 5 HOH B 26 526 99 HOH HOH . 
F 5 HOH B 27 527 100 HOH HOH . 
F 5 HOH B 28 528 101 HOH HOH . 
F 5 HOH B 29 529 102 HOH HOH . 
F 5 HOH B 30 530 103 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 P PG GTP . . . C 3 -8.07 17.419 -5.001 1 26.76 ? PG GTP 301 A 1 
HETATM 2 O O1G GTP . . . C 3 -7.932 17.013 -6.409 1 32.78 ? O1G GTP 301 A 1 
HETATM 3 O O2G GTP . . . C 3 -6.706 17.768 -4.434 1 26.8 ? O2G GTP 301 A 1 
HETATM 4 O O3G GTP . . . C 3 -8.643 16.196 -4.295 1 26.03 ? O3G GTP 301 A 1 
HETATM 5 O O3B GTP . . . C 3 -9.115 18.622 -4.836 1 31.63 ? O3B GTP 301 A 1 
HETATM 6 P PB GTP . . . C 3 -9.033 20.172 -5.302 1 28.48 ? PB GTP 301 A 1 
HETATM 7 O O1B GTP . . . C 3 -8.25 21.032 -4.361 1 30.4 ? O1B GTP 301 A 1 
HETATM 8 O O2B GTP . . . C 3 -8.609 20.46 -6.683 1 31.38 ? O2B GTP 301 A 1 
HETATM 9 O O3A GTP . . . C 3 -10.597 20.588 -5.254 1 35.21 ? O3A GTP 301 A 1 
HETATM 10 P PA GTP . . . C 3 -11.425 20.796 -6.629 1 31.33 ? PA GTP 301 A 1 
HETATM 11 O O1A GTP . . . C 3 -10.891 21.983 -7.399 1 33.42 ? O1A GTP 301 A 1 
HETATM 12 O O2A GTP . . . C 3 -11.471 19.546 -7.476 1 24.68 ? O2A GTP 301 A 1 
HETATM 13 O O5' GTP . . . C 3 -12.89 21.145 -6.089 1 36.72 ? O5' GTP 301 A 1 
HETATM 14 C C5' GTP . . . C 3 -13.455 20.516 -4.961 1 31.36 ? C5' GTP 301 A 1 
HETATM 15 C C4' GTP . . . C 3 -14.979 20.643 -4.98 1 33.12 ? C4' GTP 301 A 1 
HETATM 16 O O4' GTP . . . C 3 -15.255 21.927 -4.456 1 38.96 ? O4' GTP 301 A 1 
HETATM 17 C C3' GTP . . . C 3 -15.589 20.619 -6.372 1 36.92 ? C3' GTP 301 A 1 
HETATM 18 O O3' GTP . . . C 3 -16.916 20.159 -6.236 1 34.74 ? O3' GTP 301 A 1 
HETATM 19 C C2' GTP . . . C 3 -15.609 22.086 -6.773 1 37.5 ? C2' GTP 301 A 1 
HETATM 20 O O2' GTP . . . C 3 -16.615 22.398 -7.702 1 38.95 ? O2' GTP 301 A 1 
HETATM 21 C C1' GTP . . . C 3 -15.863 22.756 -5.428 1 36.06 ? C1' GTP 301 A 1 
HETATM 22 N N9 GTP . . . C 3 -15.28 24.107 -5.376 1 35.35 ? N9 GTP 301 A 1 
HETATM 23 C C8 GTP . . . C 3 -14.012 24.499 -5.735 1 33.45 ? C8 GTP 301 A 1 
HETATM 24 N N7 GTP . . . C 3 -13.902 25.828 -5.518 1 34.31 ? N7 GTP 301 A 1 
HETATM 25 C C5 GTP . . . C 3 -15.077 26.277 -5.007 1 35.03 ? C5 GTP 301 A 1 
HETATM 26 C C6 GTP . . . C 3 -15.516 27.539 -4.609 1 39.78 ? C6 GTP 301 A 1 
HETATM 27 O O6 GTP . . . C 3 -14.762 28.508 -4.695 1 36.93 ? O6 GTP 301 A 1 
HETATM 28 N N1 GTP . . . C 3 -16.81 27.692 -4.13 1 39.29 ? N1 GTP 301 A 1 
HETATM 29 C C2 GTP . . . C 3 -17.655 26.595 -4.035 1 37.07 ? C2 GTP 301 A 1 
HETATM 30 N N2 GTP . . . C 3 -18.906 26.732 -3.579 1 38.3 ? N2 GTP 301 A 1 
HETATM 31 N N3 GTP . . . C 3 -17.212 25.348 -4.444 1 32.55 ? N3 GTP 301 A 1 
HETATM 32 C C4 GTP . . . C 3 -15.953 25.202 -4.925 1 30.33 ? C4 GTP 301 A 1 
#
_model_server_stats.io_time_ms              81 
_model_server_stats.parse_time_ms           98 
_model_server_stats.create_model_time_ms    17 
_model_server_stats.query_time_ms           359 
_model_server_stats.encode_time_ms          3 
_model_server_stats.element_count           32 
#