data_4QXK # _model_server_result.job_id RvFRK6EHc4Oll5z-6nd4XA _model_server_result.datetime_utc '2024-11-26 11:46:50' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 4qxk # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"B","auth_seq_id":401}' # _entry.id 4QXK # loop_ _exptl.entry_id _exptl.method 4QXK 'X-RAY DIFFRACTION' 4QXK 'NEUTRON DIFFRACTION' # _entity.details ? _entity.formula_weight 345.205 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'CYCLIC GUANOSINE MONOPHOSPHATE' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 4QXK _cell.length_a 48.746 _cell.length_b 48.746 _cell.length_c 104.861 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 4QXK _symmetry.cell_setting ? _symmetry.Int_Tables_number 92 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 41 21 2' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id B _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A O LYS 92 A LYS 308 1_555 C NA NA . A NA 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.487 ? metalc ? metalc2 A O GLN 95 A GLN 311 1_555 C NA NA . A NA 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.41 ? metalc ? metalc3 A O GLU 97 A GLU 313 1_555 C NA NA . A NA 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.517 ? metalc ? metalc4 C NA NA . A NA 402 1_555 D O DOD . A DOD 1011 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.414 ? metalc ? metalc5 C NA NA . A NA 402 1_555 D O DOD . A DOD 1013 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.679 ? metalc ? metalc6 C NA NA . A NA 402 1_555 D O DOD . A DOD 1031 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.628 ? # _chem_comp.formula 'C10 H12 N5 O7 P' _chem_comp.formula_weight 345.205 _chem_comp.id PCG _chem_comp.mon_nstd_flag . _chem_comp.name 'CYCLIC GUANOSINE MONOPHOSPHATE' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag PA O1A PCG sing 237 n n PA O2A PCG doub 238 n n PA O5' PCG sing 239 n n PA O3' PCG sing 240 n n O1A HO1A PCG sing 241 n n O5' C5' PCG sing 242 n n C5' C4' PCG sing 243 n n C5' "H5'1" PCG sing 244 n n C5' "H5'2" PCG sing 245 n n C4' O4' PCG sing 246 n n C4' C3' PCG sing 247 n n C4' H4' PCG sing 248 n n O4' C1' PCG sing 249 n n C3' O3' PCG sing 250 n n C3' C2' PCG sing 251 n n C3' H3' PCG sing 252 n n C2' O2' PCG sing 253 n n C2' C1' PCG sing 254 n n C2' H2' PCG sing 255 n n O2' HO2' PCG sing 256 n n C1' N9 PCG sing 257 n n C1' H1' PCG sing 258 n n N9 C8 PCG sing 259 n y N9 C4 PCG sing 260 n y C8 N7 PCG doub 261 n y C8 H8 PCG sing 262 n n N7 C5 PCG sing 263 n y C5 C6 PCG sing 264 n n C5 C4 PCG doub 265 n y C6 O6 PCG doub 266 n n C6 N1 PCG sing 267 n n N1 C2 PCG sing 268 n n N1 HN1 PCG sing 269 n n C2 N2 PCG sing 270 n n C2 N3 PCG doub 271 n n N2 HN21 PCG sing 272 n n N2 HN22 PCG sing 273 n n N3 C4 PCG sing 274 n n # _atom_sites.entry_id 4QXK _atom_sites.fract_transf_matrix[1][1] 0.020515 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.020515 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.009536 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 PCG A 1 401 401 PCG PCG . C 3 NA A 1 402 501 NA NA . D 4 DOD A 1 1001 1001 DOD DOD . D 4 DOD A 2 1002 1002 DOD DOD . D 4 DOD A 3 1003 1003 DOD DOD . D 4 DOD A 4 1004 1004 DOD DOD . D 4 DOD A 5 1005 1005 DOD DOD . D 4 DOD A 6 1006 1006 DOD DOD . D 4 DOD A 7 1007 1007 DOD DOD . D 4 DOD A 8 1008 1008 DOD DOD . D 4 DOD A 9 1009 1009 DOD DOD . D 4 DOD A 10 1010 1010 DOD DOD . D 4 DOD A 11 1011 1011 DOD DOD . D 4 DOD A 12 1012 1012 DOD DOD . D 4 DOD A 13 1013 1013 DOD DOD . D 4 DOD A 14 1014 1014 DOD DOD . D 4 DOD A 15 1015 1015 DOD DOD . D 4 DOD A 16 1016 1016 DOD DOD . D 4 DOD A 17 1017 1017 DOD DOD . D 4 DOD A 18 1018 1018 DOD DOD . D 4 DOD A 19 1019 1019 DOD DOD . D 4 DOD A 20 1020 1020 DOD DOD . D 4 DOD A 21 1021 1021 DOD DOD . D 4 DOD A 22 1022 1022 DOD DOD . D 4 DOD A 23 1023 1023 DOD DOD . D 4 DOD A 24 1024 1024 DOD DOD . D 4 DOD A 25 1025 1025 DOD DOD . D 4 DOD A 26 1026 1026 DOD DOD . D 4 DOD A 27 1027 1027 DOD DOD . D 4 DOD A 28 1028 1028 DOD DOD . D 4 DOD A 29 1029 1029 DOD DOD . D 4 DOD A 30 1030 1030 DOD DOD . D 4 DOD A 31 1031 1031 DOD DOD . D 4 DOD A 32 1032 1032 DOD DOD . D 4 DOD A 33 1033 1033 DOD DOD . D 4 DOD A 34 1034 1034 DOD DOD . D 4 DOD A 35 1035 1035 DOD DOD . D 4 DOD A 36 1036 1036 DOD DOD . D 4 DOD A 37 1037 1037 DOD DOD . D 4 DOD A 38 1038 1038 DOD DOD . D 4 DOD A 39 1039 1039 DOD DOD . D 4 DOD A 40 1040 1040 DOD DOD . D 4 DOD A 41 1041 1041 DOD DOD . D 4 DOD A 42 1042 1042 DOD DOD . D 4 DOD A 43 1043 1043 DOD DOD . D 4 DOD A 44 1044 1044 DOD DOD . D 4 DOD A 45 1045 1045 DOD DOD . D 4 DOD A 46 1046 1046 DOD DOD . D 4 DOD A 47 1047 1047 DOD DOD . D 4 DOD A 48 1048 1048 DOD DOD . D 4 DOD A 49 1049 1050 DOD DOD . D 4 DOD A 50 1050 1051 DOD DOD . D 4 DOD A 51 1051 1052 DOD DOD . D 4 DOD A 52 1052 1053 DOD DOD . D 4 DOD A 53 1053 1054 DOD DOD . D 4 DOD A 54 1054 1055 DOD DOD . D 4 DOD A 55 1055 1056 DOD DOD . D 4 DOD A 56 1056 1057 DOD DOD . D 4 DOD A 57 1057 1059 DOD DOD . D 4 DOD A 58 1058 1060 DOD DOD . D 4 DOD A 59 1059 1061 DOD DOD . D 4 DOD A 60 1060 1062 DOD DOD . D 4 DOD A 61 1061 1063 DOD DOD . D 4 DOD A 62 1062 1065 DOD DOD . D 4 DOD A 63 1063 1066 DOD DOD . D 4 DOD A 64 1064 1067 DOD DOD . D 4 DOD A 65 1065 1068 DOD DOD . D 4 DOD A 66 1066 1069 DOD DOD . D 4 DOD A 67 1067 1070 DOD DOD . D 4 DOD A 68 1068 1071 DOD DOD . D 4 DOD A 69 1069 1072 DOD DOD . D 4 DOD A 70 1070 1073 DOD DOD . D 4 DOD A 71 1071 1075 DOD DOD . D 4 DOD A 72 1072 1076 DOD DOD . D 4 DOD A 73 1073 1077 DOD DOD . D 4 DOD A 74 1074 1079 DOD DOD . D 4 DOD A 75 1075 1080 DOD DOD . D 4 DOD A 76 1076 1081 DOD DOD . D 4 DOD A 77 1077 1082 DOD DOD . D 4 DOD A 78 1078 1083 DOD DOD . D 4 DOD A 79 1079 1084 DOD DOD . D 4 DOD A 80 1080 1085 DOD DOD . D 4 DOD A 81 1081 1086 DOD DOD . D 4 DOD A 82 1082 1087 DOD DOD . D 4 DOD A 83 1083 1089 DOD DOD . D 4 DOD A 84 1084 1091 DOD DOD . D 4 DOD A 85 1085 1093 DOD DOD . D 4 DOD A 86 1086 1094 DOD DOD . D 4 DOD A 87 1087 1095 DOD DOD . D 4 DOD A 88 1088 1096 DOD DOD . D 4 DOD A 89 1089 1097 DOD DOD . D 4 DOD A 90 1090 1098 DOD DOD . D 4 DOD A 91 1091 1099 DOD DOD . D 4 DOD A 92 1092 1100 DOD DOD . D 4 DOD A 93 1093 1101 DOD DOD . D 4 DOD A 94 1094 1102 DOD DOD . D 4 DOD A 95 1095 1103 DOD DOD . D 4 DOD A 96 1096 1105 DOD DOD . D 4 DOD A 97 1097 1106 DOD DOD . D 4 DOD A 98 1098 1107 DOD DOD . D 4 DOD A 99 1099 1108 DOD DOD . D 4 DOD A 100 1100 1109 DOD DOD . D 4 DOD A 101 1101 1110 DOD DOD . D 4 DOD A 102 1102 1111 DOD DOD . D 4 DOD A 103 1103 1112 DOD DOD . D 4 DOD A 104 1104 1113 DOD DOD . D 4 DOD A 105 1105 1114 DOD DOD . D 4 DOD A 106 1106 1116 DOD DOD . D 4 DOD A 107 1107 1117 DOD DOD . D 4 DOD A 108 1108 1118 DOD DOD . D 4 DOD A 109 1109 1121 DOD DOD . D 4 DOD A 110 1110 1122 DOD DOD . D 4 DOD A 111 1111 1123 DOD DOD . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 P PA PCG . . . B 2 -1.283 -11.208 18.134 1 16.93 ? PA PCG 401 A 1 HETATM 2 O O1A PCG . . . B 2 0.069 -11.249 18.761 1 14 ? O1A PCG 401 A 1 HETATM 3 O O2A PCG . . . B 2 -2.525 -11.231 19.103 1 17.83 ? O2A PCG 401 A 1 HETATM 4 O O5' PCG . . . B 2 -1.376 -12.352 17.108 1 18.79 ? O5' PCG 401 A 1 HETATM 5 C C5' PCG . . . B 2 -2.685 -12.331 16.343 1 19.56 ? C5' PCG 401 A 1 HETATM 6 C C4' PCG . . . B 2 -2.678 -11.062 15.549 1 19.55 ? C4' PCG 401 A 1 HETATM 7 O O4' PCG . . . B 2 -3.805 -10.742 14.757 1 21.36 ? O4' PCG 401 A 1 HETATM 8 C C3' PCG . . . B 2 -2.532 -9.843 16.415 1 21.13 ? C3' PCG 401 A 1 HETATM 9 O O3' PCG . . . B 2 -1.338 -9.862 17.26 1 17.38 ? O3' PCG 401 A 1 HETATM 10 C C2' PCG . . . B 2 -2.615 -8.68 15.482 1 20.27 ? C2' PCG 401 A 1 HETATM 11 O O2' PCG . . . B 2 -1.386 -8.177 15.076 1 19.94 ? O2' PCG 401 A 1 HETATM 12 C C1' PCG . . . B 2 -3.486 -9.365 14.348 1 21.48 ? C1' PCG 401 A 1 HETATM 13 N N9 PCG . . . B 2 -4.774 -8.7 14.135 1 27.48 ? N9 PCG 401 A 1 HETATM 14 C C8 PCG . . . B 2 -5.206 -8.076 12.901 1 29.04 ? C8 PCG 401 A 1 HETATM 15 N N7 PCG . . . B 2 -6.515 -7.558 13.168 1 28.9 ? N7 PCG 401 A 1 HETATM 16 C C5 PCG . . . B 2 -6.887 -7.862 14.539 1 30.26 ? C5 PCG 401 A 1 HETATM 17 C C6 PCG . . . B 2 -8.104 -7.581 15.355 1 33.16 ? C6 PCG 401 A 1 HETATM 18 O O6 PCG . . . B 2 -9.171 -6.887 14.813 1 34.82 ? O6 PCG 401 A 1 HETATM 19 N N1 PCG . . . B 2 -8.178 -8.011 16.658 1 34.92 ? N1 PCG 401 A 1 HETATM 20 C C2 PCG . . . B 2 -7.094 -8.728 17.245 1 34.25 ? C2 PCG 401 A 1 HETATM 21 N N2 PCG . . . B 2 -7.153 -9.203 18.616 1 36.39 ? N2 PCG 401 A 1 HETATM 22 N N3 PCG . . . B 2 -5.872 -9.007 16.446 1 29.48 ? N3 PCG 401 A 1 HETATM 23 C C4 PCG . . . B 2 -5.817 -8.573 15.141 1 29.43 ? C4 PCG 401 A 1 HETATM 24 H "H5'1" PCG . . . B 2 -2.764 -13.066 15.73 1 19.35 ? "H5'1" PCG 401 A 1 HETATM 25 H "H5'2" PCG . . . B 2 -3.455 -12.347 16.947 1 19.74 ? "H5'2" PCG 401 A 1 HETATM 26 H H4' PCG . . . B 2 -1.885 -11.083 14.943 1 20.06 ? H4' PCG 401 A 1 HETATM 27 D D3' PCG . . . B 2 -1.167 -7.56 15.549 1 22.11 ? D3' PCG 401 A 1 HETATM 28 H H3' PCG . . . B 2 -3.324 -9.817 17.004 1 19.24 ? H3' PCG 401 A 1 HETATM 29 D D2' PCG . . . B 2 -6.483 -9.64 18.949 1 37.38 ? D2' PCG 401 A 1 HETATM 30 H H2' PCG . . . B 2 -3.123 -7.933 15.866 1 22.15 ? H2' PCG 401 A 1 HETATM 31 D D1' PCG . . . B 2 -7.853 -9.056 19.103 1 36.94 ? D1' PCG 401 A 1 HETATM 32 H H1' PCG . . . B 2 -2.968 -9.322 13.504 1 22.84 ? H1' PCG 401 A 1 HETATM 33 D D8 PCG . . . B 2 -8.884 -7.847 17.12 1 37.8 ? D8 PCG 401 A 1 HETATM 34 H H8 PCG . . . B 2 -4.728 -8.022 12.1 1 26.49 ? H8 PCG 401 A 1 # _model_server_stats.io_time_ms 0 _model_server_stats.parse_time_ms 52 _model_server_stats.create_model_time_ms 7 _model_server_stats.query_time_ms 1107 _model_server_stats.encode_time_ms 4 _model_server_stats.element_count 34 #