data_4QXO # _model_server_result.job_id o451_SWWo-tvXf19jzOIiA _model_server_result.datetime_utc '2024-10-15 14:24:03' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 4qxo # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"B","auth_seq_id":401}' # _entry.id 4QXO # _exptl.entry_id 4QXO _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 282.291 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description '(5,6-dimethyl-9-oxo-9H-xanthen-4-yl)acetic acid' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 4QXO _cell.length_a 62.921 _cell.length_b 62.921 _cell.length_c 196.054 _cell.Z_PDB 12 _cell.pdbx_unique_axis ? # _symmetry.entry_id 4QXO _symmetry.cell_setting ? _symmetry.Int_Tables_number 178 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 61 2 2' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 8_675 x-y+1,-y+2,-z 1 0 0 0 -1 0 0 0 -1 0 108.982369 0 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id B _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _chem_comp.formula 'C17 H14 O4' _chem_comp.formula_weight 282.291 _chem_comp.id 1YE _chem_comp.mon_nstd_flag . _chem_comp.name '(5,6-dimethyl-9-oxo-9H-xanthen-4-yl)acetic acid' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag CAG CAF 1YE doub 1 n y CAG CAP 1YE sing 2 n y CAK CAM 1YE sing 3 n n CAK CAP 1YE sing 4 n n CAF CAI 1YE sing 5 n y CAM OAC 1YE doub 6 n n CAM OAE 1YE sing 7 n n CAP CAU 1YE doub 8 n y CAI CAR 1YE doub 9 n y CAU CAR 1YE sing 10 n y CAU OAL 1YE sing 11 n n CAR CAQ 1YE sing 12 n n OAL CAT 1YE sing 13 n n CAQ OAD 1YE doub 14 n n CAQ CAS 1YE sing 15 n n CAT CAS 1YE doub 16 n y CAT CAO 1YE sing 17 n y CAB CAO 1YE sing 18 n n CAS CAJ 1YE sing 19 n y CAO CAN 1YE doub 20 n y CAJ CAH 1YE doub 21 n y CAN CAH 1YE sing 22 n y CAN CAA 1YE sing 23 n n CAJ H1 1YE sing 24 n n CAH H2 1YE sing 25 n n CAA H3 1YE sing 26 n n CAA H4 1YE sing 27 n n CAA H5 1YE sing 28 n n CAB H6 1YE sing 29 n n CAB H7 1YE sing 30 n n CAB H8 1YE sing 31 n n CAI H9 1YE sing 32 n n CAF H10 1YE sing 33 n n CAG H11 1YE sing 34 n n CAK H12 1YE sing 35 n n CAK H13 1YE sing 36 n n OAE H14 1YE sing 37 n n # _atom_sites.entry_id 4QXO _atom_sites.fract_transf_matrix[1][1] 0.015893 _atom_sites.fract_transf_matrix[1][2] 0.009176 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.018352 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.005101 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 1YE A 1 401 1 1YE DRG . C 3 HOH A 1 501 1 HOH HOH . C 3 HOH A 2 502 2 HOH HOH . C 3 HOH A 3 503 3 HOH HOH . C 3 HOH A 4 504 4 HOH HOH . C 3 HOH A 5 505 5 HOH HOH . C 3 HOH A 6 506 6 HOH HOH . C 3 HOH A 7 507 7 HOH HOH . C 3 HOH A 8 508 8 HOH HOH . C 3 HOH A 9 509 9 HOH HOH . C 3 HOH A 10 510 10 HOH HOH . C 3 HOH A 11 511 11 HOH HOH . C 3 HOH A 12 512 12 HOH HOH . C 3 HOH A 13 513 13 HOH HOH . C 3 HOH A 14 514 14 HOH HOH . C 3 HOH A 15 515 15 HOH HOH . C 3 HOH A 16 516 16 HOH HOH . C 3 HOH A 17 517 17 HOH HOH . C 3 HOH A 18 518 18 HOH HOH . C 3 HOH A 19 519 19 HOH HOH . C 3 HOH A 20 520 20 HOH HOH . C 3 HOH A 21 521 21 HOH HOH . C 3 HOH A 22 522 22 HOH HOH . C 3 HOH A 23 523 23 HOH HOH . C 3 HOH A 24 524 24 HOH HOH . C 3 HOH A 25 525 25 HOH HOH . C 3 HOH A 26 526 26 HOH HOH . C 3 HOH A 27 527 27 HOH HOH . C 3 HOH A 28 528 28 HOH HOH . C 3 HOH A 29 529 29 HOH HOH . C 3 HOH A 30 530 30 HOH HOH . C 3 HOH A 31 531 31 HOH HOH . C 3 HOH A 32 532 33 HOH HOH . C 3 HOH A 33 533 34 HOH HOH . C 3 HOH A 34 534 35 HOH HOH . C 3 HOH A 35 535 36 HOH HOH . C 3 HOH A 36 536 37 HOH HOH . C 3 HOH A 37 537 38 HOH HOH . C 3 HOH A 38 538 39 HOH HOH . C 3 HOH A 39 539 40 HOH HOH . C 3 HOH A 40 540 41 HOH HOH . C 3 HOH A 41 541 42 HOH HOH . C 3 HOH A 42 542 43 HOH HOH . C 3 HOH A 43 543 44 HOH HOH . C 3 HOH A 44 544 45 HOH HOH . C 3 HOH A 45 545 46 HOH HOH . C 3 HOH A 46 546 47 HOH HOH . C 3 HOH A 47 547 48 HOH HOH . C 3 HOH A 48 548 49 HOH HOH . C 3 HOH A 49 549 50 HOH HOH . C 3 HOH A 50 550 51 HOH HOH . C 3 HOH A 51 551 52 HOH HOH . C 3 HOH A 52 552 53 HOH HOH . C 3 HOH A 53 553 54 HOH HOH . C 3 HOH A 54 554 55 HOH HOH . C 3 HOH A 55 555 56 HOH HOH . C 3 HOH A 56 556 57 HOH HOH . C 3 HOH A 57 557 58 HOH HOH . C 3 HOH A 58 558 59 HOH HOH . C 3 HOH A 59 559 60 HOH HOH . C 3 HOH A 60 560 61 HOH HOH . C 3 HOH A 61 561 62 HOH HOH . C 3 HOH A 62 562 63 HOH HOH . C 3 HOH A 63 563 64 HOH HOH . C 3 HOH A 64 564 65 HOH HOH . C 3 HOH A 65 565 66 HOH HOH . C 3 HOH A 66 566 67 HOH HOH . C 3 HOH A 67 567 68 HOH HOH . C 3 HOH A 68 568 69 HOH HOH . C 3 HOH A 69 569 70 HOH HOH . C 3 HOH A 70 570 71 HOH HOH . C 3 HOH A 71 571 72 HOH HOH . C 3 HOH A 72 572 73 HOH HOH . C 3 HOH A 73 573 74 HOH HOH . C 3 HOH A 74 574 75 HOH HOH . C 3 HOH A 75 575 76 HOH HOH . C 3 HOH A 76 576 77 HOH HOH . C 3 HOH A 77 577 78 HOH HOH . C 3 HOH A 78 578 79 HOH HOH . C 3 HOH A 79 579 80 HOH HOH . C 3 HOH A 80 580 81 HOH HOH . C 3 HOH A 81 581 82 HOH HOH . C 3 HOH A 82 582 83 HOH HOH . C 3 HOH A 83 583 84 HOH HOH . C 3 HOH A 84 584 85 HOH HOH . C 3 HOH A 85 585 86 HOH HOH . C 3 HOH A 86 586 87 HOH HOH . C 3 HOH A 87 587 88 HOH HOH . C 3 HOH A 88 588 89 HOH HOH . C 3 HOH A 89 589 90 HOH HOH . C 3 HOH A 90 590 91 HOH HOH . C 3 HOH A 91 591 92 HOH HOH . C 3 HOH A 92 592 93 HOH HOH . C 3 HOH A 93 593 94 HOH HOH . C 3 HOH A 94 594 95 HOH HOH . C 3 HOH A 95 595 96 HOH HOH . C 3 HOH A 96 596 97 HOH HOH . C 3 HOH A 97 597 98 HOH HOH . C 3 HOH A 98 598 99 HOH HOH . C 3 HOH A 99 599 100 HOH HOH . C 3 HOH A 100 600 101 HOH HOH . C 3 HOH A 101 601 102 HOH HOH . C 3 HOH A 102 602 103 HOH HOH . C 3 HOH A 103 603 104 HOH HOH . C 3 HOH A 104 604 105 HOH HOH . C 3 HOH A 105 605 106 HOH HOH . C 3 HOH A 106 606 107 HOH HOH . C 3 HOH A 107 607 108 HOH HOH . C 3 HOH A 108 608 109 HOH HOH . C 3 HOH A 109 609 110 HOH HOH . C 3 HOH A 110 610 111 HOH HOH . C 3 HOH A 111 611 112 HOH HOH . C 3 HOH A 112 612 113 HOH HOH . C 3 HOH A 113 613 114 HOH HOH . C 3 HOH A 114 614 115 HOH HOH . C 3 HOH A 115 615 116 HOH HOH . C 3 HOH A 116 616 117 HOH HOH . C 3 HOH A 117 617 118 HOH HOH . C 3 HOH A 118 618 119 HOH HOH . C 3 HOH A 119 619 120 HOH HOH . C 3 HOH A 120 620 122 HOH HOH . C 3 HOH A 121 621 123 HOH HOH . C 3 HOH A 122 622 124 HOH HOH . C 3 HOH A 123 623 125 HOH HOH . C 3 HOH A 124 624 126 HOH HOH . C 3 HOH A 125 625 127 HOH HOH . C 3 HOH A 126 626 128 HOH HOH . C 3 HOH A 127 627 129 HOH HOH . C 3 HOH A 128 628 130 HOH HOH . C 3 HOH A 129 629 132 HOH HOH . C 3 HOH A 130 630 133 HOH HOH . C 3 HOH A 131 631 135 HOH HOH . C 3 HOH A 132 632 136 HOH HOH . C 3 HOH A 133 633 138 HOH HOH . C 3 HOH A 134 634 139 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 O OAD 1YE . . . B 2 -16.913 52.085 -3.644 1 21.87 ? OAD 1YE 401 A 1 HETATM 2 C CAQ 1YE . . . B 2 -18.087 52.173 -3.207 1 18.29 ? CAQ 1YE 401 A 1 HETATM 3 C CAS 1YE . . . B 2 -19.156 52.069 -4.081 1 18.47 ? CAS 1YE 401 A 1 HETATM 4 C CAJ 1YE . . . B 2 -18.968 51.88 -5.449 1 19.15 ? CAJ 1YE 401 A 1 HETATM 5 C CAH 1YE . . . B 2 -20.089 51.757 -6.304 1 16.84 ? CAH 1YE 401 A 1 HETATM 6 C CAN 1YE . . . B 2 -21.395 51.829 -5.799 1 19.67 ? CAN 1YE 401 A 1 HETATM 7 C CAA 1YE . . . B 2 -22.52 51.711 -6.653 1 25.26 ? CAA 1YE 401 A 1 HETATM 8 C CAO 1YE . . . B 2 -21.592 52.036 -4.427 1 22.2 ? CAO 1YE 401 A 1 HETATM 9 C CAB 1YE . . . B 2 -22.866 52.116 -3.794 1 19.46 ? CAB 1YE 401 A 1 HETATM 10 C CAT 1YE . . . B 2 -20.465 52.177 -3.62 1 21.4 ? CAT 1YE 401 A 1 HETATM 11 O OAL 1YE . . . B 2 -20.706 52.339 -2.325 1 22.41 ? OAL 1YE 401 A 1 HETATM 12 C CAU 1YE . . . B 2 -19.692 52.388 -1.437 1 22.13 ? CAU 1YE 401 A 1 HETATM 13 C CAR 1YE . . . B 2 -18.353 52.319 -1.857 1 15.64 ? CAR 1YE 401 A 1 HETATM 14 C CAI 1YE . . . B 2 -17.334 52.372 -0.879 1 22.69 ? CAI 1YE 401 A 1 HETATM 15 C CAF 1YE . . . B 2 -17.712 52.519 0.46 1 18.38 ? CAF 1YE 401 A 1 HETATM 16 C CAG 1YE . . . B 2 -19.054 52.618 0.841 1 21.4 ? CAG 1YE 401 A 1 HETATM 17 C CAP 1YE . . . B 2 -20.066 52.548 -0.115 1 21.65 ? CAP 1YE 401 A 1 HETATM 18 C CAK 1YE . . . B 2 -21.433 52.639 0.231 1 25.61 ? CAK 1YE 401 A 1 HETATM 19 C CAM 1YE . . . B 2 -22.368 51.413 -0.084 1 32.8 ? CAM 1YE 401 A 1 HETATM 20 O OAE 1YE . . . B 2 -23.6 51.605 0.14 1 24.49 ? OAE 1YE 401 A 1 HETATM 21 O OAC 1YE . . . B 2 -21.857 50.326 -0.472 1 22.31 ? OAC 1YE 401 A 1 # _model_server_stats.io_time_ms 150 _model_server_stats.parse_time_ms 99 _model_server_stats.create_model_time_ms 52 _model_server_stats.query_time_ms 296 _model_server_stats.encode_time_ms 4 _model_server_stats.element_count 21 #